augustus: symbol lookup error: /home/yue/anaconda3/envs/funannotate/bin/../lib/libgsl.so.25: undefined symbol: cblas_ctrmv

[Midreancgle]

Hi
The following problems occurred when I used Augustus.

when I installed it with conda:

conda install augustus=3.3.3
augustus --species=help

The following error occurs：(The version of gsl is 2.6)

augustus: symbol lookup error: /home/yue/anaconda3/envs/funannotate/bin/../lib/libgsl.so.25: undefined symbol: cblas_ctrmv

when I installed it with conda:

conda install augustus=3.4
augustus --species=help

The following error occurs：(The version of gsl is 2.7.1)

augustus: error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory

The gsl=2.7.1 doesn't have a libgsl.so.25 at all, but libgsl.so.27.

I want to use Augustus=3.3.3, how can I solve the above problems？

[KatharinaHoff]

You need to install the missing library. I generally recommend to install Augustus and dependencies outside of conda, directly from github. Midreancgle ***@***.***> schrieb am Sa. 18. Juni 2022 um 10:24:

…

Hi The following problems occurred when I used Augustus. when I installed it with conda: conda install augustus=3.3.3 augustus --species=help The following error occurs：(The version of gsl is 2.6) augustus: symbol lookup error: /home/yue/anaconda3/envs/funannotate/bin/../lib/libgsl.so.25: undefined symbol: cblas_ctrmv when I installed it with conda: conda install augustus=3.4 augustus --species=help The following error occurs：(The version of gsl is 2.7.1) augustus: error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory The gsl=2.7.1 doesn't have a libgsl.so.25 at all, but libgsl.so.27. I want to use Augustus=3.3.3, how can I solve the above problems？ — Reply to this email directly, view it on GitHub <#344>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AJMC6JEFZAYTQZERJB4KYXLVPWBVJANCNFSM5ZEM6WRA> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[Midreancgle]

How to quickly test whether Augustus is installed successfully and can run normally?

[guo-cheng]

How to quickly test whether Augustus is installed successfully and can run normally?

Hi!
I also met this problem. Did you resolve it?

[bitahu]

conda install -c conda-forge gsl can fix this error : error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory