the tama bed output further analysis

[NahlaHu]

Hi Richard,

So, if we have now the tama output bed files, how bed files can be used to start the transcriptome analysis; in-terms of detection of new isoforms and evaluation of used reference completeness.

Thanks
Nahla

[GenomeRIK]

Hi Nahla,

If you have a reference annotation you want to compare to, you can use TAMA Merge to do the comparison (make sure to read the wiki thoroughly).

You can also feed your annotation bed files into the TAMA ORF/NMD pipeline to get coding region predictions and matching to known proteins.

Cheers,
Richard

[NahlaHu]

Thank you

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