Use GENOMICSDB_TAG to test with a version compatible GenomicsDB for s…

…moke testing with TestGenomicsDBJar (#282)

* React to changes from GenomicsDB/TestGenomicsDBJar#6

* Revert to using test_genomicsdbjar.sh

* Add a compatibility test with the minimum version that passed the compatiblity test

* Use the master branch for TestGenomicsDBJar

.github/workflows/release_test.yml

@@ -24,12 +24,13 @@ jobs:
         uses: actions/checkout@v3
         with:
           repository: GenomicsDB/TestGenomicsDBJar
-          ref: ml_genomicsdb_release
+          ref: master
 
       - name: Set version number
         run: |
           echo VERSION_NUMBER=${GITHUB_REF_NAME:1} >> $GITHUB_ENV
           echo GENOMICSDB_VERSION=${GITHUB_REF_NAME:1} >> $GITHUB_ENV
+          echo GENOMICSDB_MIN_TAG=v1.5.0-SNAPSHOT >> $GITHUB_ENV
 
       - uses: actions/setup-java@v3
         with:
@@ -44,11 +45,15 @@ jobs:
       - name: Run smoke test
         shell: bash
         run: |
-          rm -f libtiledbgenomicsdb.*
           mvn install:install-file -Dfile=genomicsdb-${VERSION_NUMBER}.jar \
             -DgroupId=org.genomicsdb -DartifactId=genomicsdb -Dversion=${VERSION_NUMBER} \
             -Dpackaging=jar -DpomFile=genomicsdb-${VERSION_NUMBER}.pom
-          ./test_genomicsdbjar.sh
+          GENOMICSDB_TAG=${GITHUB_REF_NAME} ./test_genomicsdbjar.sh
+
+      - name: Run compatibility test
+        shell: bash
+        run: GENOMICSDB_TAG=${GENOMICSDB_MIN_TAG} ./test_genomicsdbjar.sh
+
 #
 #      - name: Checkout GATK
 #        uses: actions/checkout@v3