Release 1.5.0

What's Changed

• Checkout build of readthedocs for GenomicsDB usage/functionality #265
• Expose some of the underlying filesystem functionality in GenomicsDB for use in Python/R/Java bindings #266
• Use azure lite client from OmicsDataAutomation #267
• Protobuf cleanup to allow for import/export from other languages via prototype buffers #268
• Update python notebook for docs #269
• Allow for resize/retry if size_per_column_partition specified to vcf2genomicsdb is too small #270
• React to codecov's need for explicit gcov specification for C/C++ #272
• Use unflattened genomic coordinates in error messages from GenomicsDB queries #271
• Update base docker image #273
• cmake argument fix for readthedocs #275
• Support building and testing of GenomicsDB on ubuntu 22.04 #276
• Removal of spark2 support #277
• Explicit Coverage Step for C++ sources as codecov/codecov-action@v3 not handling it well #280
• Use GENOMICSDB_TAG to test with a version compatible GenomicsDB for smoke testing with TestGenomicsDBJar #282
• Exclude spark from core jar #281
• java 17 support #284
• Minimize image size #286
• Run ubuntu 22.04 on the installed openssl 3 for continuous builds and minor cleanup #288
• Use the new tiledb_array_evaluate_cell to apply filter expressions for the SingleCellTileDBIterator #285
• upgrade spark version to 3.4.0 #289
• Install genomicsdb_status.h, update snapshot version and copyrights #290
• Fix typos, formatting and links in import-etl docs and update README.md #291
• Add overlapping contigs in vidmap test #292
• Remove mpi dependencies from vcf2genomicsdb #294
• Build genomicsdb-spark.jar with no dependencies #293

New Contributors

• @eneskuluk made their first contribution in #275

Full Changelog: v1.4.5...v1.5.0