Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Merge nci modules #276

Open
wants to merge 8 commits into
base: develop
Choose a base branch
from
Open

Merge nci modules #276

Changes from 1 commit
Commits
Show all changes
8 commits
Select commit Hold shift + click to select a range
0c31644
initial work
Nov 16, 2023
4f28d76
remove need for dea-env module, move some pip packages to conda env
Nov 22, 2023
3b0d1af
remove dea-env and dea_unstable
Nov 22, 2023
b2a32d6
use double quotes around python version
Nov 23, 2023
649387e
update test script to not need full module path and test against note…
Nov 24, 2023
fad9ec5
set tide modelling env var on module load
Nov 24, 2023
c6141c8
add pytest-odc to requirements
Nov 29, 2023
d5fec89
fix bash syntax
Dec 4, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
13 changes: 12 additions & 1 deletion nci_environment/test-module.sh
View file
Open in desktop
Expand Up @@ -2,6 +2,10 @@


# Module to test
if [[-z $1 ]]; then
echo "ERROR: no module provided"
exit 1
fi
module_to_test="$1"

echo Testing module: "$module_to_test"
Expand All @@ -10,7 +14,7 @@ echo Testing module: "$module_to_test"
export MODULEPATH=/apps/.mf:/opt/Modules/modulefiles:/apps/Modules/modulefiles:

# Ensure that all files are world readable
if [[ $(find "$module_to_test" ! -perm /004) ]]; then
if [[ $(find /g/data/v10/public/modules/modulefiles/"$module_to_test" ! -perm /004) ]]; then
echo "ERROR: Some files in $module_to_test are not world readable."
exit 1
fi
Expand All @@ -26,6 +30,13 @@ module load "$module_to_test"
# TODO Check the output from:
datacube system check

echo Testing notebooks
cd ../..
export DEA_TOOLS_TIDE_MODELS=/g/data/v10/tide_models
if [[ ! -d dea-notebooks ]]; then
git clone --depth 1 https://github.com/GeoscienceAustralia/dea-notebooks.git
fi
./dea-notebooks/Tests/test_notebooks.sh

# Run the initialise Test Database Script

Expand Down