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Merge nci modules #276

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Merge nci modules #276

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0c31644
initial work
Nov 16, 2023
4f28d76
remove need for dea-env module, move some pip packages to conda env
Nov 22, 2023
3b0d1af
remove dea-env and dea_unstable
Nov 22, 2023
b2a32d6
use double quotes around python version
Nov 23, 2023
649387e
update test script to not need full module path and test against note…
Nov 24, 2023
fad9ec5
set tide modelling env var on module load
Nov 24, 2023
c6141c8
add pytest-odc to requirements
Nov 29, 2023
d5fec89
fix bash syntax
Dec 4, 2023
9ecb1d2
Merge branch 'develop' into merge_nci_modules
Ariana-B Jun 26, 2024
6edb531
Merge remote-tracking branch 'origin/develop' into merge_nci_modules
Jun 28, 2024
687cf05
fix env vs reqs package listing
Jul 1, 2024
0605703
use forked dive action, try with pytest 8.1.1
Jul 2, 2024
5262eda
change dive action ver
Jul 2, 2024
b97371d
actually fix dive action version this time
Jul 2, 2024
8007cf1
Merge branch 'develop' into merge_nci_modules
Ariana-B Jul 8, 2024
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13 changes: 12 additions & 1 deletion nci_environment/test-module.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,10 @@


# Module to test
if [[-z $1 ]]; then
echo "ERROR: no module provided"
exit 1
fi
module_to_test="$1"

echo Testing module: "$module_to_test"
Expand All @@ -10,7 +14,7 @@ echo Testing module: "$module_to_test"
export MODULEPATH=/apps/.mf:/opt/Modules/modulefiles:/apps/Modules/modulefiles:

# Ensure that all files are world readable
if [[ $(find "$module_to_test" ! -perm /004) ]]; then
if [[ $(find /g/data/v10/public/modules/modulefiles/"$module_to_test" ! -perm /004) ]]; then
echo "ERROR: Some files in $module_to_test are not world readable."
exit 1
fi
Expand All @@ -26,6 +30,13 @@ module load "$module_to_test"
# TODO Check the output from:
datacube system check

echo Testing notebooks
cd ../..
export DEA_TOOLS_TIDE_MODELS=/g/data/v10/tide_models
if [[ ! -d dea-notebooks ]]; then
git clone --depth 1 https://github.com/GeoscienceAustralia/dea-notebooks.git
fi
./dea-notebooks/Tests/test_notebooks.sh

# Run the initialise Test Database Script

Expand Down