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The Greally Lab

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  1. Nadel-et-al.-2015 Nadel-et-al.-2015 Public

    Perl 3

  2. BAARMY BAARMY Public

    This repo is for all code used to develop the Slinky R package during the Einstein Hackathon

    R 3

  3. gaiaAssociation gaiaAssociation Public

    gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials

    Python 3 1

  4. gaiaAssociation-Example-Guide gaiaAssociation-Example-Guide Public

    A jupyter notebook and collected dataset assembled to help users learn gaiaAsscoiation (https://github.com/GreallyLab/gaiaAssociation) and RLEA analysis.

    HTML 2

  5. SMITE SMITE Public

    This repo contains the R package SMITE.

    R 1 1

  6. PE_Suzuki_et_al_2016 PE_Suzuki_et_al_2016 Public

    codes used for "Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus."

    1

Repositories

Showing 10 of 16 repositories
  • gaiaAssociation Public

    gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials

    GreallyLab/gaiaAssociation’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Sep 12, 2024
  • gaiaAssociation-Example-Guide Public

    A jupyter notebook and collected dataset assembled to help users learn gaiaAsscoiation (https://github.com/GreallyLab/gaiaAssociation) and RLEA analysis.

    GreallyLab/gaiaAssociation-Example-Guide’s past year of commit activity
    HTML 2 0 0 0 Updated Sep 12, 2024
  • TBT_Genomic_Analyses_TVTetal_2022 Public

    this github has my annotated markdown with all of the scripts that were run to generate the data and images in the paper.

    GreallyLab/TBT_Genomic_Analyses_TVTetal_2022’s past year of commit activity
    R 0 0 0 0 Updated Jun 24, 2022
  • Toxo_2022 Public

    Code used for Toxoplasma gondii infection of human cell project completed by Ronnie Cutler, Reanna Dona and Netha Ulahannan

    GreallyLab/Toxo_2022’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 21, 2022
  • Johnston_Simoes-Pires_et_al_2020 Public

    A repository for the code used for the analysis within the paper "Transient side effects of CRISPR/Cas9-VP160 for gene activation"

    GreallyLab/Johnston_Simoes-Pires_et_al_2020’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 2, 2020
  • Rastogi_et_al_2019 Public

    Custom code used to analyze data and generate figures within "Genomic insights into the pediatric obese asthma phenotype reveal a shift to memory T cells and cellular reprogramming targeting Rho GTPase pathways."

    GreallyLab/Rastogi_et_al_2019’s past year of commit activity
    HTML 1 0 0 0 Updated Mar 17, 2020
  • BAARMY Public

    This repo is for all code used to develop the Slinky R package during the Einstein Hackathon

    GreallyLab/BAARMY’s past year of commit activity
    R 3 GPL-3.0 0 0 0 Updated May 15, 2019
  • PBMC_Kong_2017 Public

    Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data.

    GreallyLab/PBMC_Kong_2017’s past year of commit activity
    CSS 1 2 0 0 Updated Aug 23, 2018
  • Johnston_et_al Public

    A repository for the code used for the analysis within the paper "Fucntional genetic variants mediate their regulatory effects through altered transcription factor binding."

    GreallyLab/Johnston_et_al’s past year of commit activity
    R 0 0 0 0 Updated Aug 17, 2018
  • MADSEQ Public

    Detecting, quantifying and discriminating the mechanism of mosaic chromosomal aneuploidies using MAD-seq

    GreallyLab/MADSEQ’s past year of commit activity
    R 0 0 0 0 Updated Apr 6, 2018
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