Add H5Dchunk_iter method for iterating over chunks #6
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gauteh
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derobins
reviewed
Aug 27, 2020
derobins
reviewed
Aug 27, 2020
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Thanks for your comments, I think the MSVC failure is unrelated. |
|
I think github might be out of sync with Bitbucket and is missing a splitter VFD fix on Windows. It is almost certainly not due to your changes. Thank you for your contribution, but keep in mind that we don't make changes to the VFD interface lightly, so this is going to require some discussion before it goes anywhere. |
|
I understand
… I think github might be out of sync with Bitbucket and is missing a
splitter VFD fix on Windows. It is almost certainly not due to your changes.
Thank you for your contribution, but keep in mind that we don't make
changes to the VFD interface lightly, so this is going to require some
discussion before it goes anywhere.
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gauteh
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jrmainzer,
lrknox,
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Rebased off current develop. |
fortnern
reviewed
May 3, 2021
fortnern
reviewed
May 3, 2021
This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case.
lrknox
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May 22, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com>
lrknox
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May 24, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com>
lrknox
added a commit
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May 25, 2021
…687) * Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com>
lrknox
added a commit
that referenced
this pull request
Jun 2, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Update version to 1.12.1-6. Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com>
lrknox
added a commit
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Jun 7, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Revert "Add H5Dchunk_iter method for iterating over chunks. Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com>
lrknox
added a commit
that referenced
this pull request
Jun 12, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Set version to 1.12.1. Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com>
lrknox
added a commit
that referenced
this pull request
Jun 16, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Set version to 1.12.1. * Hdf5 1 12 fix warnings files (#755) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com>
lrknox
added a commit
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Jun 17, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Set version to 1.12.1. * Hdf5 1 12 fix warnings files (#755) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fixes an array issue flagged by PGI in a C++ test (#763) * Hdf5 1 12 Fix cmake configure path (#761) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
lrknox
added a commit
that referenced
this pull request
Jun 18, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Set version to 1.12.1. * Hdf5 1 12 fix warnings files (#755) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fixes an array issue flagged by PGI in a C++ test (#763) * Hdf5 1 12 Fix cmake configure path (#761) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Restore initials to release notes. Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
lrknox
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that referenced
this pull request
Jun 22, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Set version to 1.12.1. * Hdf5 1 12 fix warnings files (#755) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fixes an array issue flagged by PGI in a C++ test (#763) * Hdf5 1 12 Fix cmake configure path (#761) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Restore initials to release notes. * Copy release notes from 1.10.7 RELEASE.txt ffor fixes also in 1.12.1. * emove 2 entries added in PR #777. Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
lrknox
added a commit
that referenced
this pull request
Jun 26, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Set version to 1.12.1. * Hdf5 1 12 fix warnings files (#755) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fixes an array issue flagged by PGI in a C++ test (#763) * Hdf5 1 12 Fix cmake configure path (#761) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Restore initials to release notes. * Copy release notes from 1.10.7 RELEASE.txt ffor fixes also in 1.12.1. * emove 2 entries added in PR #777. * Add RELEASE.txt entry for h5repack bug fix (#792) * Hdf5 1 12 Fix tools test (#795) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path * Update missing release note info. * Update code owners * Correct JIRA note * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Add 2 release notes. * Hdf5 1 12 Release Note (#785) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path * Update missing release note info. * Update code owners * Correct JIRA note * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Hdf5 1 12 Update missing release note info. (#777) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path * Update missing release note info. * Update code owners * Correct JIRA note Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
lrknox
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Jul 1, 2021
* Hdf5 1 12 doxygen version correction (#658) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Attempt format uniformity in RELEASE.txt. * BUG: DataSet assignment operator is missing (#503) * BUG: DataSet assignment operator is missing * Some compilers complain if the copy constructor is given explicitly but the assignment operator is implicitly set to default. * Explicitly defining the assignment operator allows us to properly handle reference counters for shared resources. * BUG: DataSet assignment operator is missing. * Mimicking code of H5DataType::operator() as suggested by @bmribler. * Added test Description: Added test for DataSet::operator= that Leengit added Platform tested: Linux/64 (jelly) * Removed Author field. * Commit clang format changes. * Entry for Leengit's github PR #503 * Removed lines left by mistake Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add H5Dchunk_iter method for iterating over chunks (#6) * Add H5Dchunk_iter method for iterating over chunks This method iterates over all chunks in dataset, calling a user-supplied callback with the chunk information and optional user supplied data. The iterator is stopped when ITER_STOP is returned by the user-supplied callback or the iterator is exhausted. Existing methods to get chunk_info performs an iteration each time, so to get many or all chunks causes SUM(i) for i = 0 -> N operations for N chunks, as opposed to N operations when using this iterator for this use case. * H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration. * H5D: move H5Dchunk_iter private methods to specific * trace: add H5D_chunk_iter_op_t and trace H5D.c * chunks-iter: document chunk_iter * chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Set initial doxygen version for H5Dchunk_iter(). * Revert "Set initial doxygen version for H5Dchunk_iter()." This reverts commit d739e46. * Revert "Add H5Dchunk_iter method for iterating over chunks (#6)" This reverts commit 53e1139. * Add flushrefresh errors with check-passthrough-vol to known problems in RELEASE.txt. * Minor RELEASE.txt updates. * Hdf5 1 12 Remove version from pkgcfg file names (#672) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * More minor updates. * Update configure disablhing memory alloc sanity check for release. Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021 Last 50 lines of /mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue * Set version to 1.12.1. * Hdf5 1 12 fix warnings files (#755) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fixes an array issue flagged by PGI in a C++ test (#763) * Hdf5 1 12 Fix cmake configure path (#761) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Restore initials to release notes. * Copy release notes from 1.10.7 RELEASE.txt ffor fixes also in 1.12.1. * emove 2 entries added in PR #777. * Add RELEASE.txt entry for h5repack bug fix (#792) * Hdf5 1 12 Fix tools test (#795) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path * Update missing release note info. * Update code owners * Correct JIRA note * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Add 2 release notes. * Hdf5 1 12 Release Note (#785) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path * Update missing release note info. * Update code owners * Correct JIRA note * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Hdf5 1 12 Update missing release note info. (#777) * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions * TRILAB-227 and tools debug merge from develop * TRILAB-227 Enable test * Quote subset args * Use MATCHES in compiler id compare, merge from dev * Revert test enable * Add file to list * doxygen version errors * if blocks needed for build modes * Update list of test platforms * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Merge CMake and java refs from dev * Reworked CMake Fortran configure macros to allow multiple runs. * Fix CMake issue with tests not comparing test argument properly. * MAX_PRECISION defines must be defined with a value * Fix warnings files and -std * remove std for c++11 * Replace file * Fix cmake configure path * Update missing release note info. * Update code owners * Correct JIRA note Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * RELEASE.txt corrections. * Update url for Libaec license to appear in binary README.txt file. Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com> Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org> Co-authored-by: Gaute Hope <eg@gaute.vetsj.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
This was referenced Jan 4, 2022
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This was referenced Nov 17, 2022
This was referenced Jan 4, 2023
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mattjala
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in mattjala/hdf5
Sep 20, 2024
Adding a few minor comments that were left out in previous checkin.
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This method iterates over all chunks in dataset, calling a user-supplied
callback with the chunk information and optional user supplied data.
The iterator is stopped when ITER_STOP is returned by the user-supplied
callback or the iterator is exhausted.
Existing methods to get chunk_info performs an iteration each time, so
to get many or all chunks causes SUM(i) for i = 0 -> N operations for N
chunks, as opposed to N operations when using this iterator for this use case.
About 200x speedup for iterating over all chunks in a 1.4gb file (previously 25 seconds, now 140 ms).
This change is