Add example converted spectral libraries (#70) #92
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Python tests | |
on: push | |
jobs: | |
test: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, windows-latest, macos-latest] | |
python-version: ["3.8", "3.9", "3.10"] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install flake8 pytest setuptools jsonschema | |
- name: Lint with flake8 | |
run: | | |
# stop the build if there are Python syntax errors or undefined names | |
flake8 implementations/python --count --select=E9,F63,F7,F82 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 implementations/python --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Install python package | |
run: | | |
pip install --editable implementations/python | |
- name: Test with pytest | |
env: | |
MZSPECLIB_PEAK_ANNOTATION_SCHEMA_LOCATION: "specification/peak-annotation-format/annotation-schema.json" | |
run: | | |
pytest -r a |