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SPEED: Store BAM index and flag stats on file #36

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HenrikBengtsson opened this issue Feb 28, 2016 · 0 comments

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HenrikBengtsson commented Feb 28, 2016

Store samtools idxstats and flagstats on file, e.g. foo.bai.idxstats and foo.bam.flagstats.

Make sure those files newer than BAM index/BAM file, otherwise regenerate. Same for BAI.

HenrikBengtsson changed the title ~~SPEED: Store BAM index stats on file~~ SPEED: Store BAM index and flag stats on file

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