... is a lightweight implementation of the SSAM framework. It provides the functionality of SSAMs most popular and widely used features in a graphical user interface with a few functions added for convenience and ease of use. After installation on a server it can be used by researchers as browser-based web app.
Author: Sebastian Tiesmeyer (sebastian.tiesmeyer@bih-charite.de)1
1 Digital Health Center, Berlin Institute of Health (BIH) at Charité – Universitätsmedizin, Berlin, Germany
You might also want to check out the SSAM-lite implementation.
For a guide to help you choose read https://ssam-lite.readthedocs.io/en/latest/local_vs_server.html
https://ssam-lite.readthedocs.io/en/latest/installation.html#ssam-lite-server
https://ssam-lite.readthedocs.io
This project follows the SemVer guidelines for versioning.
For a list of versions see the releases.
Sebastian Tiesmeyer, Shashwat Sahay, Niklas Müller-Bötticher, Roland Eils, Sebastian D. Mackowiak, Naveed Ishaque. 2021. "SSAM-lite: a light-weight web app for rapid analysis of spatially resolved transcriptomics data" bioRxiv. doi: 10.1101/2021.09.29.462194
Multiple datasets to try out SSAM-lite have been prepared and are available for download on Zenodo (https://zenodo.org/record/5517607).
This project is licensed under the MIT License - for details please refer to the LICENSE file.