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@HoldenLab

HoldenLab

We use advanced microscopy and image analysis to understand how living organisms, mostly bacteria, work. Find all our scientific software here.

Popular repositories Loading

  1. microscope-focus-lock microscope-focus-lock Public

    Arduino-based microscope autofocus control

    C++ 15 1

  2. LifeHack LifeHack Public

    Open source SMLM microscope designs

    C++ 11

  3. microscope-incubation-box microscope-incubation-box Public

    Microscope incubation box for home built single molecule microscope.

    8 3

  4. DeepAutoFocus DeepAutoFocus Public

    Autofocus by live infra-red brightfield image cross correlation

    Java 2

  5. shadowlessTIRF shadowlessTIRF Public

    Forked from kyleellefsen/shadowlessTIRF

    Shadowless TIRF Galvo Driver

    Python

  6. ring-fitting-bisson2017 ring-fitting-bisson2017 Public

    Microhole ring fitting (circular kymograph analysis) code associated with Bisson-Filho et al Science 2017

    MATLAB

Repositories

Showing 10 of 22 repositories
  • holdenlab.github.io Public

    Holden Lab website

    HoldenLab/holdenlab.github.io’s past year of commit activity
    JavaScript 0 MIT 1 1 0 Updated Oct 18, 2024
  • FastAcquisition2 Public

    Fast acquisition plugin for Micromanager 2.0gamma

    HoldenLab/FastAcquisition2’s past year of commit activity
    Java 0 GPL-3.0 0 4 0 Updated Aug 13, 2024
  • DeepAutoFocus Public

    Autofocus by live infra-red brightfield image cross correlation

    HoldenLab/DeepAutoFocus’s past year of commit activity
    Java 2 0 0 0 Updated Jul 15, 2024
  • lipowskiModel Public
    HoldenLab/lipowskiModel’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jun 4, 2024
  • shadowlessTIRF Public Forked from kyleellefsen/shadowlessTIRF

    Shadowless TIRF Galvo Driver

    HoldenLab/shadowlessTIRF’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jan 23, 2024
  • LifeHackWebsite Public

    Website for LifeHack microscope system

    HoldenLab/LifeHackWebsite’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 23, 2023
  • septal_constriction_analysis Public

    Contains functions for fitting septal images and analysing constriction vs. time data

    HoldenLab/septal_constriction_analysis’s past year of commit activity
    MATLAB 0 1 0 0 Updated Dec 20, 2023
  • microscope-focus-lock Public

    Arduino-based microscope autofocus control

    HoldenLab/microscope-focus-lock’s past year of commit activity
    C++ 15 1 0 0 Updated Sep 18, 2023
  • LifeHack Public

    Open source SMLM microscope designs

    HoldenLab/LifeHack’s past year of commit activity
    C++ 11 0 0 0 Updated May 31, 2023
  • Kymograph-spt-analysis Public

    All the code needed to reproduce Stu's single molecule MreB data analysis

    HoldenLab/Kymograph-spt-analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 18, 2023
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