MBP M1 fails to 'brew update' and 'brew upgrade' #10275

AlbertoPimpo · 2021-01-09T18:55:57Z

Bug report

Please note we will close your issue without comment if you delete, do not read or do not fill out the issue checklist below and provide ALL the requested information. If you repeatedly fail to use the issue template, we will block you from ever submitting issues to Homebrew again.

ran brew update and can still reproduce the problem?
ran brew doctor, fixed all issues and can still reproduce the problem?
ran brew config and brew doctor and included their output with your issue?

What you were trying to do (and why)

Every time i try to install with brew install something it gives me the following warning and error. When i try to update or upgrade it gave me only the warning and the error. Trying 'brew install git' or 'brew reinstall git' doesn't solved.

What happened (include command output)

brew upgrade (the same output with brew update) fails with this warning and error.

alberto@MacBook-Pro ~ % brew upgrade Warning: git 2.30.0 is already installed and up-to-date To reinstall 2.30.0, runbrew reinstall git/opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6334 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6342 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6343 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6361 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6362 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6380 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6381 Killed: 9 "$GIT_EXECUTABLE" "$@" ==> Homebrew has enabled anonymous aggregate formula and cask analytics. Read the analytics documentation (and how to opt-out) here: https://docs.brew.sh/Analytics No analytics have been recorded yet (or will be during thisbrew` run).

Error: Failure while executing; git config --replace-all homebrew.analyticsmessage true was terminated by uncaught signal KILL.

`

Command output

`alberto@MacBook-Pro ~ % brew update Warning: git 2.30.0 is already installed and up-to-date To reinstall 2.30.0, run `brew reinstall git` /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6947 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6963 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6975 Killed: 9 "$GIT_EXECUTABLE" "$@" Error: Fetching /opt/homebrew failed! Fetching /opt/homebrew/Library/Taps/homebrew/homebrew-cask failed! Fetching /opt/homebrew/Library/Taps/homebrew/homebrew-core failed! /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6986 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6994 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 6995 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 7013 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 7014 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 7032 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 7033 Killed: 9 "$GIT_EXECUTABLE" "$@" ==> Homebrew has enabled anonymous aggregate formula and cask analytics. Read the analytics documentation (and how to opt-out) here: https://docs.brew.sh/Analytics No analytics have been recorded yet (or will be during this `brew` run).

Error: Failure while executing; git config --replace-all homebrew.analyticsmessage true was terminated by uncaught signal KILL.
`

What you expected to happen

I expect it updates and upgrade what i have installed 😅

Step-by-step reproduction instructions (by running `brew` commands)

brew update or brew upgrade on apple silicon macbook pro (the same error is given with brew install but the installation goes fine)

Output of `brew config` and `brew doctor` commands

alberto@MacBook-Pro ~ % brew config
HOMEBREW_VERSION: >=2.5.0 (shallow or no git repository)
ORIGIN: (none)
HEAD: (none)
Last commit: never
Core tap ORIGIN: (none)
Core tap HEAD: (none)
Core tap last commit: never
Core tap branch: (none)
HOMEBREW_PREFIX: /opt/homebrew
HOMEBREW_CASK_OPTS: []
HOMEBREW_MAKE_JOBS: 8
Homebrew Ruby: 2.6.3 => /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/bin/ruby
CPU: octa-core 64-bit arm_firestorm_icestorm
Clang: 12.0 build 1200
Git: N/A
Curl: 7.64.1 => /usr/bin/curl
macOS: 11.1-arm64
CLT: 12.3.0.0.1.1607026830
Xcode: 12.3
Rosetta 2: false
alberto@MacBook-Pro ~ % brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!

Warning: Git could not be found in your PATH.
Homebrew uses Git for several internal functions, and some formulae use Git
checkouts instead of stable tarballs. You may want to install Git:
  brew install git

The text was updated successfully, but these errors were encountered:

carlocab · 2021-01-09T18:57:26Z

What does which -a git say?

AlbertoPimpo · 2021-01-09T18:58:00Z

alberto@MacBook-Pro ~ % which -a git /opt/homebrew/bin/git /usr/bin/git

AlbertoPimpo · 2021-01-09T19:00:10Z

Sorry, i tried to paste everything correctly but it does in one line (i'm not confident with markdown 😅). In the terminal everything is correctly spaced

carlocab · 2021-01-09T19:00:47Z

Your Homebrew-installed git is probably broken. This seems to have come up a bunch of times, but I have no idea how it happens.

Please read the following message before trying the steps below

Please make a note of the steps you took to encounter this problem, and the output of brew config and brew doctor. Then, share that information with us in this issue if the steps below fix it for you. Thanks!

Do

brew uninstall git
brew update
brew reinstall pcre2 gettext
brew install git

and let me know if that helps.

AlbertoPimpo · 2021-01-09T19:03:37Z

Now it works, thanks. Congrats for the amazing project and thanks for the responsiveness, it's really incredible. If you need some telemetry for the error let me know.

carlocab · 2021-01-09T19:12:48Z

Well, if you could describe in as much detail as possible everything you did with brew before encountering this error, that would help.

Or, even better, if you can figure out how to reproduce this error, that should help us figure out a way to get rid of it for good. This may entail uninstalling brew and restarting with a fresh installation, so I can understand if you don't quite have the time to get into this at the moment. I'd greatly appreciate it if you could, however.

In case you try working with a freshly installed copy of brew, you may wish to use brew bundle dump to generate a Brewfile for your currently installed formulae. This will simplify reinstalling them later on.

fluffy-critter · 2021-01-10T18:36:10Z

The git issue happened for me on a completely fresh install of homebrew and git on a brand new M1 Mac mini. It was literally one of the first things I did on this computer and the git install was immediately broken. I didn't even do a brew update before the issues started, much less any upgrades. Perhaps it's an issue with how one of the dependent libraries is getting bootstrapped on first install?

carlocab · 2021-01-10T19:06:25Z

Thanks for the info, @fluffy-critter. Does that mean you manually did brew install git before doing anything else? Or did the installer or running brew somehow insist on installing it automatically for you?

richiksc · 2021-01-10T19:08:38Z

@fluffy-critter @AlbertoPimpo Did you install the Xcode Command Line Tools before you installed Homebrew? Xcode CLT comes with a slightly outdated version of git, and can be installed by trying to run git in the Terminal without having a git binary installed. I believe Homebrew requires the system version of git to bootstrap itself before you can actually install git from Homebrew.

fluffy-critter · 2021-01-10T19:27:13Z

To clarify, the sequence of events was:

Installed Xcode CLT
Installed homebrew
brew install git

Which resulted in a broken git installation in /opt/homebrew. I had to brew uninstall git to be able to do anything else with git (and pretty much everything I do depends on it).

MikeMcQuaid · 2021-01-11T10:18:52Z

My suspicion is that brew install git is calling the wrong Homebrew installation and/or architecture.

carlocab · 2021-01-11T11:18:48Z

It seems to still have installed in /opt/homebrew, though: #10275 (comment), Homebrew/discussions#439 (reply in thread)

Maybe the git shim is getting confused?

fluffy-critter · 2021-01-11T15:41:11Z

My suspicion is that brew install git is calling the wrong Homebrew installation and/or architecture.

The error seems to be with one of the library dependencies and not with git itself. In Homebrew/discussions#439 it’s reinstalling the dependencies which fixes the issue.

The specific error I was getting when trying to run git was that it was kill -9ed, which implies it’s getting a signal from something else. I’m not sure how macOS responds to a binary trying to load in a dylib for a different architecture, though.

Also I wonder if maybe this was a transitory issue? For me the original failed installation happened on January 6, and it wasn’t until yesterday that I finally got around to seeking a real solution other than uninstalling homebrew git (I had been chalking it up to vague “silicon growing pains” and had more urgent stuff to get working). I wonder if any brand-new installs today are still having the problem.

richiksc · 2021-01-11T18:08:30Z

Just my experience: I installed brew via untar into /opt/homebrew on Apple Silicon before it was properly supported, and then I installed git around when the bottle became available in December: #9488.

I had installed Xcode CLT first, then Brew, then brew git. Never had any issues with git or brew. Although, the Git version I installed (and the Git version I still have installed) is git v2.29.2.

Looks like people who had the issue in Homebrew/discussions#439 and @AlbertoPimpo both had installed (or were trying to install git v2.30.0). Potentially could be an issue with the new version?

carlocab · 2021-01-11T18:14:16Z

I'm guessing the problem comes from doing brew install git before running brew update after a fresh brew install using the standard installer.

Doing this (i.e. brew install git without brew update) installs an old, broken version of git, which is evidenced by the output of brew config in the first post of this issue and in Homebrew/discussions#439 (reply in thread). This shouldn't be happening, since brew install, by default, should do brew update before anything else.

Right now the way to avoid this seems to be to brew update manually before brew install git, but you shouldn't have to do that.

fluffy-critter · 2021-01-11T18:16:52Z

Hmm, interesting! I had always assumed that installing brew did a checkout from the git repo to begin with so there shouldn't be anything outdated, but I have to admit not knowing too much about how brew's installer works...

carlocab · 2021-01-11T18:19:36Z

I had always assumed that installing brew did a checkout from the git repo to begin with

I assumed that too, but: either it doesn't, or it's failed to do so in the cases we've seen, given the output of brew config.

EricFromCanada · 2021-01-11T18:58:20Z

The installer does actually run brew update after checking out homebrew/core.

fluffy-critter · 2021-01-11T19:51:04Z

Hm, and I don't see any updates that would have happened after I had installed on the 6th. The PCRE recipe was updated on the 5th (specifically to add arm64 support) though, so maybe there was a broken build for a couple days? Is there a means of auditing the bindist package history?

AlbertoPimpo · 2021-01-11T21:21:12Z

To clarify, the sequence of events was:

Installed Xcode CLT
Installed homebrew
brew install git

For me was quite the same, the only difference is that i was installing the full Xcode from appstore. Xcode was still installing after the installation so i'm not so sure what xcode installed before and after the brew installation.

MikeMcQuaid · 2021-01-12T09:01:54Z

Can anyone reproduce this today with the current Homebrew installer, Git and Homebrew/brew?

ghost · 2021-02-21T13:16:52Z

Every Big Sur update deletes most of my CLT (I do not have Xcode installed on this machine). That breaks brew update etc.

I reinstalled CLT, and everything works again.

I thought I was going mad when that happened. Did the recent Big Sur update on my M1 and Brew told me that CLTs weren't installed, so I'm now in the process of installing them again. Literally everything was gone, except whatis.

❯ brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!

Warning: Git could not be found in your PATH.
Homebrew uses Git for several internal functions, and some formulae use Git
checkouts instead of stable tarballs. You may want to install Git:
  brew install git

Warning: No developer tools installed.
Install the Command Line Tools:
  xcode-select --install

❯ echo $PATH
/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Applications/Little Snitch.app/Contents/Components
❯ cd /Library/Developer/CommandLineTools
❯ ls
usr
❯ cd usr
❯ ls
share
❯ cd share
❯ ls
man
❯ cd man
❯ ls
whatis

Is this a known issue on Apple's side?

jgoldshlag2 · 2021-03-05T22:38:48Z

I'm having what looks like the same issues with brew upgrade and git. I recently upgraded to 11.2 (M1 Mac Mini), realized it broke homebrew, and reinstalled the CLT.

I did then brew upgrade, which kicked this error:

jonah@M1-Mini ~ % brew update Warning: git 2.30.1 is already installed and up-to-date. To reinstall 2.30.1, run: brew reinstall git /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 82711 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 82726 Killed: 9 "$GIT_EXECUTABLE" "$@" Error: Fetching /opt/homebrew failed! Fetching /opt/homebrew/Library/Taps/homebrew/homebrew-core failed! /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 82740 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 82748 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 82749 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 82767 Killed: 9 "$GIT_EXECUTABLE" "$@" /opt/homebrew/Library/Homebrew/cmd/update.sh: line 18: 82768 Killed: 9 "$GIT_EXECUTABLE" "$@" ==> Homebrew has enabled anonymous aggregate formula and cask analytics. Read the analytics documentation (and how to opt-out) here: https://docs.brew.sh/Analytics No analytics have been recorded yet (nor will be during this brew` run).

Error: Failure while executing; git config --replace-all homebrew.analyticsmessage true was terminated by uncaught signal KILL.
jonah@M1-Mini ~ % `

I uninstalled git and I believe the upgrade is working, but whenever I reinstall it and do brew upgrade it fails with the same error. It seems confined to git version 2.30.1, which is what brew is installing.

carlocab · 2021-03-05T22:41:46Z

Do

brew update
brew reinstall pcre2 gettext

then try reinstalling git. See also Homebrew/discussions#439.

jgoldshlag2 · 2021-03-05T22:48:38Z

That worked, thanks! It looks like it was git's dependencies causing the issue.

TC72 · 2021-03-08T16:33:22Z

Not sure if this is related but updated to 11.2.2 and had issues when trying to get Neovim.
Saw the git message after brew update/upgrade and followed instructions here to install it.
I still can't get Neovim to install with brew install -s --HEAD neovim and get this:

[100%] Generating doc/tags
cd /tmp/neovim-20210308-50427-76us9g/build/runtime && /opt/homebrew/Cellar/cmake/3.19.6/bin/cmake -E remove doc/*
cd /tmp/neovim-20210308-50427-76us9g/build/runtime/pack/dist/opt/vimball && /tmp/neovim-20210308-50427-76us9g/build/bin/nvim -u NONE -i NONE -e --headless -c helptags\ doc -c quit
cd /tmp/neovim-20210308-50427-76us9g/build/runtime/pack/dist/opt/matchit && /tmp/neovim-20210308-50427-76us9g/build/bin/nvim -u NONE -i NONE -e --headless -c helptags\ doc -c quit
cd /tmp/neovim-20210308-50427-76us9g/build/runtime && /opt/homebrew/Cellar/cmake/3.19.6/bin/cmake -E copy_directory /tmp/neovim-20210308-50427-76us9g/runtime/doc doc
cd /tmp/neovim-20210308-50427-76us9g/build/runtime && /tmp/neovim-20210308-50427-76us9g/build/bin/nvim -u NONE -i NONE -e --headless -c helptags\ ++t\ doc -c quit
/bin/sh: line 1: 53775 Killed: 9               /tmp/neovim-20210308-50427-76us9g/build/bin/nvim -u NONE -i NONE -e --headless -c helptags\ doc -c quit
/bin/sh: line 1: 53776 Killed: 9               /tmp/neovim-20210308-50427-76us9g/build/bin/nvim -u NONE -i NONE -e --headless -c helptags\ doc -c quit
/bin/sh: line 1: 53780 Killed: 9               /tmp/neovim-20210308-50427-76us9g/build/bin/nvim -u NONE -i NONE -e --headless -c helptags\ ++t\ doc -c quit
make[2]: *** [runtime/doc/tags] Error 137
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [runtime/pack/dist/opt/matchit/doc/tags] Error 137
make[2]: *** [runtime/pack/dist/opt/vimball/doc/tags] Error 137
make[1]: *** [runtime/CMakeFiles/runtime.dir/all] Error 2
make: *** [all] Error 2

carlocab · 2021-03-08T16:34:38Z

@TC72 what's the output of brew config and brew doctor?

TC72 · 2021-03-08T16:51:28Z

brew doctor says system is ready

brew config:

HOMEBREW_VERSION: 3.0.4-64-g31a4989
ORIGIN: https://github.com/Homebrew/brew
HEAD: 31a4989358f0a5bf5be3ea4695053677ab528f28
Last commit: 3 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 4efe55791f5bd057d79880f47593f31d0c29b1f8
Core tap last commit: 5 minutes ago
Core tap branch: master
HOMEBREW_PREFIX: /opt/homebrew
HOMEBREW_CASK_OPTS: []
HOMEBREW_DISPLAY: :0
HOMEBREW_MAKE_JOBS: 8
Homebrew Ruby: 2.6.3 => /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/bin/ruby
CPU: octa-core 64-bit arm_firestorm_icestorm
Clang: 12.0 build 1200
Git: 2.24.3 => /Library/Developer/CommandLineTools/usr/bin/git
Curl: 7.64.1 => /usr/bin/curl
macOS: 11.2.2-arm64
CLT: 12.4.0.0.1.1610135815
Xcode: 12.4
Rosetta 2: false

carlocab · 2021-03-08T16:54:26Z

Try

brew update
brew reinstall $(brew deps neovim)

then reinstall neovim. It also has a bottle now, so you shouldn't need to be building it from source if you just want the latest stable release.

ghost · 2021-03-08T16:55:39Z

@TC72 You mentioned that you recently updated your Mac. Have you tried reinstalling the developer tools? I'm no expert by any means on this topic, but every Big Sur update (for me anyway) wipes the developer tools.

Try running this...
xcode-select --install

If it says they're already installed, I'll step aside and let more knowledgeable peeps help.

carlocab · 2021-03-08T16:56:51Z

They should already have the dev tools installed:

CLT: 12.4.0.0.1.1610135815

TC72 · 2021-03-08T16:57:20Z

Thanks, I did reinstall the dev tools.

ghost · 2021-03-08T16:57:57Z

They should already have the dev tools installed:
CLT: 12.4.0.0.1.1610135815

Whoops, my bad.

ghost · 2021-03-08T16:58:51Z

@TC72 You reinstalled them before, or are they installing right now?

TC72 · 2021-03-08T17:03:12Z

Command line tools were reinstalled earlier.

brew reinstall $(brew deps neovim)
Complains about there being no bottle for luajit.
Last time I installed neovim from HEAD I also had to install luajit from head.

Tried uninstalling luajit now but same error about no bottle for it.

carlocab · 2021-03-08T17:06:37Z

That's strange; brew deps neovim should not include luajit.

Try

brew uninstall neovim
brew update
brew reinstall $(brew deps neovim)

then install neovim. If brew still complains about luajit, try the above again, with brew update-reset in place of brew update. Note, however, the following:

❯ brew help update-reset
Usage: brew update-reset [repository ...]

Fetch and reset Homebrew and all tap repositories (or any specified
repository) using git(1) to their latest origin/HEAD.

Note: this will destroy all your uncommitted or committed changes.

TC72 · 2021-03-08T17:10:36Z

Yes, uninstall neovim first fixed the reinstall command.
But I just get back to where I was, a standard install gives me 0.4.4 but I need the bleeding edge 0.5 for what I'm doing.

TC72 · 2021-03-08T17:23:35Z

It's OK, I've built it from source.

carlocab · 2021-03-08T17:29:01Z

You can install neovim 0.5 with brew install --HEAD neovim.

TC72 · 2021-03-08T17:57:58Z

Gives me exactly the same errors as brew install -s --HEAD neovim

Bo98 · 2021-03-08T18:02:50Z

There's probably a crash report in Console.app that will give more info.

TC72 · 2021-03-08T18:13:16Z

I can't explain this, tried exactly the same command again to check the console output and now it works.
Thanks for your help, maybe it was broken and a commit fixed it?

Bo98 · 2021-03-08T18:15:38Z

Possibly. Such is the nature of HEAD builds - no guarantee they'll be working all the time.

alexandriaroberts · 2021-03-18T06:20:43Z

Do
brew update
brew reinstall pcre2 gettext
then try reinstalling git. See also Homebrew/discussions#439.

Been Trying for 2 Hours and finally this worked. Thank you!

github-actions · 2021-04-09T00:07:31Z

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs.

AlbertoPimpo changed the title ~~MBP M1 fails to 'brew update' and 'brew update'~~ MBP M1 fails to 'brew update' and 'brew upgrade' Jan 9, 2021

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MikeMcQuaid added the bug Reproducible Homebrew/brew bug label Jan 11, 2021

carlocab mentioned this issue Jan 12, 2021

Irssi broken build on ARM mac Homebrew/homebrew-core#68856

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fxcoudert mentioned this issue Feb 15, 2021

brew should error out when CLT is not there #10623

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cacology mentioned this issue Mar 10, 2021

Common-Issues.md: reinstallation instructions for localized build failures #10613

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MBP M1 fails to 'brew update' and 'brew upgrade' #10275

MBP M1 fails to 'brew update' and 'brew upgrade' #10275

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AlbertoPimpo commented Jan 9, 2021 • edited Loading

Bug report

What you were trying to do (and why)

What happened (include command output)

What you expected to happen

Step-by-step reproduction instructions (by running brew commands)

Output of brew config and brew doctor commands

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Please read the following message before trying the steps below

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