Release 0.2.0 #416
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Release 0.2.0 #416
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* fix visu mcmc * PR
Correctly use `MuduleNotFoundError` instead of `RuntimeError`, as in AMICI. Co-authored-by: Yannik Schälte <31767307+yannikschaelte@users.noreply.github.com>
* improve hdf5 error message; fixes #391 * fixup
* fix initial parameters from optimization results * flake8 * test * fix pymc3 Co-authored-by: Yannik Schälte <31767307+yannikschaelte@users.noreply.github.com> Co-authored-by: yannikschaelte <yannik.schaelte@gmail.com>
* init modularize * modularize work packages; use active descriptions * fixup * fix autocorrect * Update pypesto/objective/base.py Co-authored-by: Fabian Fröhlich <fabian@schaluck.com> * Update pypesto/objective/history.py Co-authored-by: Fabian Fröhlich <fabian@schaluck.com> * Update pypesto/objective/history.py Co-authored-by: Fabian Fröhlich <fabian@schaluck.com> * Update pypesto/objective/history.py Co-authored-by: Fabian Fröhlich <fabian@schaluck.com> * Update test/test_sample.py Co-authored-by: Fabian Fröhlich <fabian@schaluck.com> * Update test/test_sample.py Co-authored-by: Fabian Fröhlich <fabian@schaluck.com> * address reviewer comments * Update pypesto/result.py Co-authored-by: Fabian Fröhlich <fabian@schaluck.com> * add typehints * fix noqa Co-authored-by: Fabian Fröhlich <fabian@schaluck.com>
* prepare v020 * Update doc/releasenotes.rst * limit pymc3 + arviz versions in setup.py
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Complexity increasing per file
==============================
- pypesto/objective/amici_calculator.py 2
- pypesto/store/read_from_hdf5.py 8
- test/test_petab_import.py 5
- pypesto/sample/sample.py 5
- test/test_sample.py 6
- pypesto/optimize/task.py 1
- test/test_store.py 10
Complexity decreasing per file
==============================
+ pypesto/objective/amici.py -2
Clones added
============
- test/test_sample.py 2
- test/test_store.py 2
See the complete overview on Codacy |
yannikschaelte
approved these changes
Jul 2, 2020
Codecov Report
@@ Coverage Diff @@
## master #416 +/- ##
==========================================
- Coverage 91.36% 91.28% -0.09%
==========================================
Files 67 68 +1
Lines 3844 3854 +10
==========================================
+ Hits 3512 3518 +6
- Misses 332 336 +4
Continue to review full report at Codecov.
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To avoid divergence between the develop and the master branch, due to the recent API change, we want to go for the next release to v.0.2.0.