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  • Griffith University
  • Brisbane, QLD, Australia
  • Twitter @DrIdoBar

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  1. A shell wrapper to split an input large FASTA file and then execute NCBI BLAST or HMMscan in parallel

    Shell 3 4

  2. A python script used to extract specific sequences from a fasta file based on ID or keyword

    Python

  3. 1
    #! /bin/bash
    2
    # Ask user for sudo password (to be used when needed)
    3
    read -s -p "Enter Password for sudo: " sudoPW
    4
    
                  
    5
    # update CRAN repository below if needed
  4. 1
    ## Setting up a cloud-based multi-user teaching server using conda
    2
    ![nectarcloud](https://i2.wp.com/www.tpac.org.au/wp-content/uploads/2016/09/nectarcloud.png)
    3
    
                  
    4
    ### Setup steps
    5
    1. Apply for an allocation at [NECTAR-RDS](https://dashboard.rc.nectar.org.au) 
  5. MAke ZOtero SPEcies Great Again

    Python 1

  6. Scientific Data Analysis Workshops (Binder-ready)

    HTML

260 contributions in the last year

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Contribution activity

October 2021

Created 1 repository

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