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Switch index to parquet format #57

Merged
merged 4 commits into from
Apr 10, 2024
Merged

Switch index to parquet format #57

merged 4 commits into from
Apr 10, 2024

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vkt1414
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@vkt1414 vkt1414 commented Apr 8, 2024

@fedorov Once ImagingDataCommons/idc-index-data#17 is merged, and new pypi release is created,
I'll lock the data version in idc-index's pyproject.toml. This PR should then pass the tests.

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fedorov commented Apr 9, 2024

We have a problem: ImagingDataCommons/idc-index-data#18

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fedorov commented Apr 9, 2024

For the background, we are switching to Parquet because it improves query performance, compresses better and organizes data column-wise as opposed to row-based organization in CSV. One article discussing this: https://blog.enterprisedna.co/pandas-read-parquet-file-into-dataframe/.

@fedorov fedorov merged commit 400e1f3 into main Apr 10, 2024
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@vkt1414 vkt1414 deleted the switch-to-parquet branch April 10, 2024 09:01
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