Script for analysis of single cell RNA seq data from BALF of covid patients and healthy controls. (Liao M. et al, Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19, Nature Medicine, 2020. https://www.nature.com/articles/s41591-020-0901-9)
Source for RDS file: http://cells.ucsc.edu/covid19-balf/nCoV.rds
Annotation txt files were downloaded from the author's GitHub repository: https://github.com/zhangzlab/covid_balf