ENH: Mark CMake variables as advanced

Closes #3113.

Author: dzenanz

CMakeLists.txt

@@ -663,9 +663,13 @@ mark_as_advanced(FORCE
   Module_BoneEnhancement
   Module_BoneMorphometry
   Module_BSplineGradient
+  Module_Cleaver
   Module_Cuberille
+  Module_CudaCommon
   Module_FixedPointInverseDisplacementField
   Module_GenericLabelInterpolator
+  Module_GrowCut
+  Module_HASI
   Module_HigherOrderAccurateGradient
   Module_IOFDF
   Module_IOMeshSTL
@@ -676,6 +680,7 @@ mark_as_advanced(FORCE
   Module_LabelErodeDilate
   Module_LesionSizingToolkit
   Module_MeshNoise
+  Module_MeshToPolyData
   Module_MGHIO
   Module_MinimalPathExtraction
   Module_Montage
@@ -689,6 +694,7 @@ mark_as_advanced(FORCE
   Module_RLEImage
   Module_RTK
   Module_SCIFIO
+  Module_Shape
   Module_SimpleITKFilters
   Module_SkullStrip
   Module_SmoothingRecursiveYvvGaussianFilter
@@ -702,7 +708,16 @@ mark_as_advanced(FORCE
   Module_TubeTK
   Module_TwoProjectionRegistration
   Module_Ultrasound
-  Module_VariationalRegistration)
+  Module_VariationalRegistration
+  Module_VkFFTBackend
+  Module_WebAssemblyInterface
+  )
+
+mark_as_advanced(FORCE
+  NSIS_EXECUTABLE
+  WIX_EXECUTABLE
+  )
+
 
 # Create an IDE folder structure similar to our source structure
 if("${CMAKE_GENERATOR}" MATCHES "Xcode|Visual Studio|KDevelop")

Modules/ThirdParty/Expat/src/CMakeLists.txt

@@ -5,3 +5,16 @@ set(ITK3P_INSTALL_LIBRARY_DIR "${ITKExpat_INSTALL_LIBRARY_DIR}")
 set(ITK3P_INSTALL_ARCHIVE_DIR "${ITKExpat_INSTALL_ARCHIVE_DIR}")
 add_subdirectory(expat)
 itk_module_target(ITKEXPAT NO_INSTALL)
+mark_as_advanced(FORCE
+  EXPAT_BUILD_DOCS
+  EXPAT_BUILD_EXAMPLES
+  EXPAT_BUILD_FUZZERS
+  EXPAT_BUILD_PKGCONFIG
+  EXPAT_BUILD_TESTS
+  EXPAT_BUILD_TOOLS
+  EXPAT_CHAR_TYPE
+  EXPAT_ENABLE_INSTALL
+  EXPAT_OSSFUZZ_BUILD
+  EXPAT_SHARED_LIBS
+  EXPAT_WARNINGS_AS_ERRORS
+  )

Modules/ThirdParty/HDF5/src/CMakeLists.txt

@@ -83,10 +83,14 @@ mark_as_advanced(HDF_ENABLE_LARGE_FILE)
 mark_as_advanced(CTEST_TEST_TIMEOUT)
 mark_as_advanced(HDF5_BUILD_GENERATORS)
 mark_as_advanced(HDF5_ENABLE_DEV_WARNINGS)
+mark_as_advanced(HDF5_ENABLE_MIRROR_VFD)
+mark_as_advanced(HDF5_IGNORE_DISABLED_FILE_LOCKS)
 mark_as_advanced(HDF5_MEMORY_ALLOC_SANITY_CHECK)
 mark_as_advanced(HDF5_USE_110_API_DEFAULT)
 mark_as_advanced(HDF5_USE_18_API_DEFAULT)
+mark_as_advanced(HDF5_USE_FILE_LOCKING)
 mark_as_advanced(HDF5_USE_PREGEN)
+mark_as_advanced(USE_LIBAEC)
 unset(ALLOW_UNSUPPORTED CACHE)
 
 if(BUILD_SHARED_LIBS)

Modules/ThirdParty/NIFTI/src/nifti/CMakeLists.txt

@@ -47,6 +47,7 @@ include(CMakeDependentOption)
 
 if("${CMAKE_VERSION}" VERSION_GREATER_EQUAL "3.13")
 set(CMAKE_VER_AT_LEAST_3_13 1 CACHE BOOL "Is set for cmake >=3.13")
+mark_as_advanced(CMAKE_VER_AT_LEAST_3_13)
 endif()
 
 # add option to build shared libraries. The default is OFF to maintain the

Modules/ThirdParty/ZLIB/src/CMakeLists.txt

@@ -7,3 +7,18 @@ set(ZLIB_COMPAT ON)
 set(ZLIB_DUAL_LINK OFF)
 set(ZLIB_ENABLE_TESTS OFF)
 add_subdirectory(itkzlib-ng)
+mark_as_advanced(FORCE
+  BIN_INSTALL_DIR
+  INC_INSTALL_DIR
+  LIB_INSTALL_DIR
+  PKGCONFIG_INSTALL_DIR
+  WITH_CODE_COVERAGE
+  WITH_FUZZERS
+  WITH_GZFILEOP
+  WITH_MAINTAINER_WARNINGS
+  WITH_NATIVE_INSTRUCTIONS
+  WITH_NEW_STRATEGIES
+  WITH_OPTIM
+  WITH_NATIVE_INSTRUCTIONS
+  WITH_SANITIZER
+  )