Update latest ITKModuleTemplate

Remove some placeholders

.circleci/config.yml

@@ -0,0 +1,63 @@
+version: 2
+jobs:
+  build-and-test:
+    working_directory: /ITKTotalVariation-build
+    docker:
+      - image: insighttoolkit/module-ci:latest
+    steps:
+      - checkout:
+          path: /ITKTotalVariation
+      - run:
+          name: Fetch CTest driver script
+          command: |
+            curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O
+      - run:
+          name: Configure CTest script
+          command: |
+            SHASNIP=$(echo $CIRCLE_SHA1 | cut -c1-7)
+            cat > dashboard.cmake << EOF
+            set(CTEST_SITE "CircleCI")
+            set(CTEST_BUILD_NAME "External-ITKTotalVariation-${CIRCLE_BRANCH}-${CIRCLE_BUILD_NUM}-${SHASNIP}")
+            set(CTEST_BUILD_CONFIGURATION "MinSizeRel")
+            set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
+            set(CTEST_BUILD_FLAGS: "-j5")
+            set(CTEST_SOURCE_DIRECTORY /ITKTotalVariation)
+            set(CTEST_BINARY_DIRECTORY /ITKTotalVariation-build)
+            set(dashboard_model Experimental)
+            set(dashboard_no_clean 1)
+            set(dashboard_cache "
+            ITK_DIR:PATH=/ITK-build
+            BUILD_TESTING:BOOL=ON
+            ")
+            include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake)
+            EOF
+      - run:
+          name: Build and Test
+          no_output_timeout: 1.0h
+          command: |
+            ctest -j 2 -VV -S dashboard.cmake
+  package:
+    working_directory: ~/ITKTotalVariation
+    machine: true
+    steps:
+      - checkout
+      - run:
+          name: Fetch build script
+          command: |
+            curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh -O
+            chmod u+x dockcross-manylinux-download-cache-and-build-module-wheels.sh
+      - run:
+          name: Build Python packages
+          no_output_timeout: 1.0h
+          command: |
+            ./dockcross-manylinux-download-cache-and-build-module-wheels.sh
+      - store_artifacts:
+          path: dist
+          destination: dist
+
+workflows:
+    version: 2
+    build-test-package:
+      jobs:
+        - build-and-test
+        - package

.travis.yml

@@ -0,0 +1,15 @@
+sudo: true
+language: cpp
+os:
+- osx
+compiler:
+- gcc
+cache:
+  directories:
+    - "$HOME/Library/Caches/Homebrew"
+script:
+- curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/macpython-download-cache-and-build-module-wheels.sh -O
+- chmod u+x macpython-download-cache-and-build-module-wheels.sh
+- ./macpython-download-cache-and-build-module-wheels.sh
+- tar -zcvf dist.tar.gz dist/
+- curl --upload-file dist.tar.gz https://transfer.sh/dist.tar.gz

CMakeLists.txt

@@ -1,4 +1,4 @@
-cmake_minimum_required(VERSION 2.8.12)
+cmake_minimum_required(VERSION 3.10.2)
 project(TotalVariation)
 
 set(TotalVariation_LIBRARIES TotalVariation)
@@ -10,5 +10,6 @@ if(NOT ITK_SOURCE_DIR)
   list(APPEND CMAKE_MODULE_PATH ${ITK_CMAKE_DIR})
   include(ITKModuleExternal)
 else()
+  set(ITK_DIR ${CMAKE_BINARY_DIR})
   itk_module_impl()
 endif()

appveyor.yml

@@ -6,7 +6,7 @@ version: "0.0.1.{build}"
 
 install:
 
-  - curl -L https://rawgit.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/windows-download-cache-and-build-module-wheels.ps1 -O
+  - curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/windows-download-cache-and-build-module-wheels.ps1 -O
   - ps: .\windows-download-cache-and-build-module-wheels.ps1
 
 build: off

include/itkMyFilter.h

@@ -0,0 +1,86 @@
+/*=========================================================================
+ *
+ *  Copyright Insight Software Consortium
+ *
+ *  Licensed under the Apache License, Version 2.0 (the "License");
+ *  you may not use this file except in compliance with the License.
+ *  You may obtain a copy of the License at
+ *
+ *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *
+ *  Unless required by applicable law or agreed to in writing, software
+ *  distributed under the License is distributed on an "AS IS" BASIS,
+ *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ *  See the License for the specific language governing permissions and
+ *  limitations under the License.
+ *
+ *=========================================================================*/
+#ifndef itkMyFilter_h
+#define itkMyFilter_h
+
+#include "itkImageToImageFilter.h"
+
+namespace itk
+{
+
+/** \class MyFilter
+ *
+ * \brief Filters a image by iterating over its pixels.
+ *
+ * Filters a image by iterating over its pixels in a multi-threaded way
+ * and {to be completed by the developer}.
+ *
+ * \ingroup TotalVariation
+ *
+ */
+template< typename TInputImage, typename TOutputImage >
+class MyFilter: public ImageToImageFilter< TInputImage, TOutputImage >
+{
+public:
+  ITK_DISALLOW_COPY_AND_ASSIGN(MyFilter);
+
+  static constexpr unsigned int InputImageDimension = TInputImage::ImageDimension;
+  static constexpr unsigned int OutputImageDimension = TOutputImage::ImageDimension;
+
+  using InputImageType = TInputImage;
+  using OutputImageType = TInputImage;
+  using InputPixelType = typename InputImageType::PixelType;
+  using OutputPixelType = typename OutputImageType::PixelType;
+
+  /** Standard class typedefs. */
+  using Self = MyFilter< InputImageType, OutputImageType >;
+  using Superclass = ImageToImageFilter< InputImageType, OutputImageType >;
+  using Pointer = SmartPointer< Self >;
+  using ConstPointer = SmartPointer< const Self >;
+
+  /** Run-time type information. */
+  itkTypeMacro( MyFilter, ImageToImageFilter );
+
+  /** Standard New macro. */
+  itkNewMacro( Self );
+
+protected:
+  MyFilter();
+  virtual ~MyFilter() override {}
+
+  void PrintSelf( std::ostream& os, Indent indent ) const override;
+
+  typedef typename OutputImageType::RegionType OutputRegionType;
+
+  virtual void DynamicThreadedGenerateData( const OutputRegionType & outputRegion) override;
+
+private:
+
+
+#ifdef ITK_USE_CONCEPT_CHECKING
+  // Add concept checking such as
+  // itkConceptMacro( FloatingPointPixel, ( itk::Concept::IsFloatingPoint< typename InputImageType::PixelType > ) );
+#endif
+};
+}
+
+#ifndef ITK_MANUAL_INSTANTIATION
+#include "itkMyFilter.hxx"
+#endif
+
+#endif // itkMyFilter

include/itkMyFilter.hxx

@@ -0,0 +1,66 @@
+/*=========================================================================
+ *
+ *  Copyright Insight Software Consortium
+ *
+ *  Licensed under the Apache License, Version 2.0 (the "License");
+ *  you may not use this file except in compliance with the License.
+ *  You may obtain a copy of the License at
+ *
+ *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *
+ *  Unless required by applicable law or agreed to in writing, software
+ *  distributed under the License is distributed on an "AS IS" BASIS,
+ *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ *  See the License for the specific language governing permissions and
+ *  limitations under the License.
+ *
+ *=========================================================================*/
+#ifndef itkMyFilter_hxx
+#define itkMyFilter_hxx
+
+#include "itkMyFilter.h"
+
+#include "itkImageRegionIterator.h"
+#include "itkImageRegionConstIterator.h"
+
+namespace itk
+{
+
+template< typename TInputImage, typename TOutputImage >
+MyFilter< TInputImage, TOutputImage >
+::MyFilter()
+{
+}
+
+
+template< typename TInputImage, typename TOutputImage >
+void
+MyFilter< TInputImage, TOutputImage >
+::PrintSelf( std::ostream& os, Indent indent ) const
+{
+  Superclass::PrintSelf( os, indent );
+}
+
+
+template< typename TInputImage, typename TOutputImage >
+void
+MyFilter< TInputImage, TOutputImage >
+::DynamicThreadedGenerateData( const OutputRegionType & outputRegion)
+{
+  OutputImageType * output = this->GetOutput();
+  const InputImageType * input = this->GetInput();
+  using InputRegionType = typename InputImageType::RegionType;
+  InputRegionType inputRegion = InputRegionType(outputRegion.GetSize());
+
+  itk::ImageRegionConstIterator<InputImageType> in(input, inputRegion);
+  itk::ImageRegionIterator<OutputImageType> out(output, outputRegion);
+
+  for (in.GoToBegin(), out.GoToBegin(); !in.IsAtEnd() && !out.IsAtEnd(); ++in, ++out)
+  {
+    out.Set( in.Get() );
+  }
+}
+
+} // end namespace itk
+
+#endif // itkMyFilter_hxx