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README.md

UBiT2: a client-side web-application for gene expression data analysis

We present a purely client-side web-application, UBiT2 (User-friendly BioInformatics Tools), that provides installation-free, offline alignment, analysis, and visualization of RNA-sequencing as well as qPCR data. Analysis modules were designed with single cell transcriptomic analysis in mind. Using just a browser, users can perform standard analyses such as quality control, filtering, hierarchical clustering, principal component analysis, differential expression analysis, gene set enrichment testing, and more, all with interactive visualizations and exportable publication-quality figures.

http://pklab.med.harvard.edu/jean/ubit2/index.html

Citation:

UBiT2: a client-side web-application for gene expression data analysis
Jean Fan, David Fan, Kamil Slowikowski, Nils Gehlenborg, Peter Kharchenko
bioRxiv 118992; doi: https://doi.org/10.1101/118992

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