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Minor changes and bugfixes #51

Merged
merged 19 commits into from
Sep 9, 2021
Merged

Minor changes and bugfixes #51

merged 19 commits into from
Sep 9, 2021

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BertvanderVeen
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  • Some minor improvements for constrained model in plotting and formula
  • Added option in summary to rotate LV coefficients to principal direction so they coincide with ordiplot
  • Adjusted number of observations for BIC and loglik see Number of observations reported by logLik and used in IC calculations #50
  • Bugfix in predicting for constrained quadratic model
  • Added some comments for clarity in C++

Bert van der Veen and others added 19 commits August 5, 2021 11:16
Improve formula for constrained model
d85c32b
Fix typo
1535e6e
Bugfix
3f4b94d
Vignette reference updates
6d244b6
Remove arrow.scale for species optima.
72c341c
Bugfix starting values num.RR+num.lv.c
2139e57
Add extra comments for clarity with num.RR+num.lv.c
716cb14
Improve predict.gllvm for constrained quadratic model
f862aef
update
b96c44d
@BertvanderVeen
Update ordiplot.gllvm.R
67dc80b
@BertvanderVeen
Revert "Update ordiplot.gllvm.R"
97fcc6d 
This reverts commit 67dc80b.
@BertvanderVeen
Add option to rotate constrained coefficients
1e67e29
@BertvanderVeen
Merge branch 'justBugs' of https://github.com/BertvanderVeen/gllvm-1 …
059c00f 
…into justBugs
@BertvanderVeen
Add option to rotate LV coefs to principal direction (as in ordiplot)…
60f4c27 
…. Species optima instead of theta for quadratic model.
@BertvanderVeen
bugfix
b41b9b0
@BertvanderVeen
Minor bugfixes
30df6ab
@BertvanderVeen
Minor adjustment in vignette and documentation
d1d44d4
@BertvanderVeen
merge
7bef9f5 
Merge remote-tracking branch 'origin/master' into justBugs

# Conflicts:
#	R/predict.gllvm.R
@BertvanderVeen
Adjust number of observations in BIC and loglik.
9770a55
@BertvanderVeen BertvanderVeen mentioned this pull request Sep 3, 2021
Closed
@JenniNiku JenniNiku merged commit 8e470a4 into JenniNiku:master Sep 9, 2021
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2 participants
@BertvanderVeen @JenniNiku