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@Katsevich-Lab

Katsevich-Lab

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  1. lab-resources lab-resources Public

    TeX

  2. sceptre sceptre Public

    An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.

    R 20 7

  3. sceptre-manuscript sceptre-manuscript Public

    This repository contains code for the paper "Conditional resampling improves calibration and sensitivity in single cell CRISPR screen analysis" by Barry et al. 2020.

    TeX 3

Repositories

Showing 10 of 32 repositories
  • sceptre Public

    An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.

    Katsevich-Lab/sceptre’s past year of commit activity
    R 20 GPL-3.0 7 12 1 Updated Jun 7, 2024
  • sceptrehub Public

    `sceptrehub` provides an interface to the example data used in the vignettes and man pages of the `sceptre` and `ondisc` packages. It also facilitates the download of `sceptre_objects` associated with real, large-scale single-cell CRISPR screen datasets.

    Katsevich-Lab/sceptrehub’s past year of commit activity
    R 0 0 0 0 Updated May 20, 2024
  • katsevich-lab.github.io Public Forked from mpa139/allanlab

    Katsevich Lab website

    Katsevich-Lab/katsevich-lab.github.io’s past year of commit activity
    SCSS 0 1,109 0 0 Updated May 18, 2024
  • import-replogle-2022 Public
    Katsevich-Lab/import-replogle-2022’s past year of commit activity
    R 0 0 0 0 Updated Apr 30, 2024
  • sceptre3-manuscript Public

    Code for the sceptre3 manuscript

    Katsevich-Lab/sceptre3-manuscript’s past year of commit activity
    R 0 0 0 0 Updated Apr 26, 2024
  • sceptre3-project-v2 Public

    Repo for the sceptre3 project.

    Katsevich-Lab/sceptre3-project-v2’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 26, 2024
  • symcrt-manuscript Public
    Katsevich-Lab/symcrt-manuscript’s past year of commit activity
    TeX 1 0 0 0 Updated Apr 20, 2024
  • sceptre2-manuscript Public

    Reproduction code for "Robust differential expression testing for single-cell CRISPR screens at low multiplicity-of-infection" by Barry et al. 2023

    Katsevich-Lab/sceptre2-manuscript’s past year of commit activity
    R 0 GPL-3.0 0 14 0 Updated Apr 16, 2024
  • lowmoi Public

    A unified interface for existing methods

    Katsevich-Lab/lowmoi’s past year of commit activity
    R 1 0 0 0 Updated Apr 14, 2024
  • simulatr-pipeline Public Forked from timothy-barry/simulatr-pipeline

    The simulatr Nextflow pipeline

    Katsevich-Lab/simulatr-pipeline’s past year of commit activity
    R 0 3 0 0 Updated Apr 7, 2024
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