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scprep v1.0.11 #114

Merged
merged 54 commits into from
Dec 22, 2020
Merged

scprep v1.0.11 #114

merged 54 commits into from
Dec 22, 2020

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scottgigante
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scottgigante and others added 30 commits November 9, 2020 11:52
@scottgigante
convert null before generic
13a6e25
@scottgigante
warn if not converted
f1d53d5
@scottgigante
runtimewarning
3f72e9e
@scottgigante
do null first
5a68ec3
@scottgigante
throw in an assert statement
39da33a
@scottgigante
temporary print
388ad91
@scottgigante
remove print statement
ab19c24
@dburkhardt
Close #107
093326b
@dburkhardt
Init GitHub Actions
10e2929
@dburkhardt
Make PEP8 compliant
3dc66cb
@dburkhardt
Make Black compliant
7fa7600
@dburkhardt
Correct flake8 call
c0eef86
@dburkhardt
Whitespace fix for sparsedataframe warning catch
f047b85
@dburkhardt
Another whitespace fix for SparseArray
44db622
@dburkhardt
Merge pull request #113 from KrishnaswamyLab/bugfix/norm-vminmax
65e552c 
Close #107
@dburkhardt
Add install SingleCellExperiment
855c0c1
@dburkhardt
Merge branch 'dev' of https://github.com/KrishnaswamyLab/scprep into dev
ee4075e
@dburkhardt
linthreshx -> linthresh
7c5e7d2
@dburkhardt
Fix creating an array of ragged nested sequences.
981255b
@dburkhardt
Fix creating an array of ragged nested sequences.
41c9cca
@dburkhardt
Update toarray
14d6018
@dburkhardt
Bury #107
5a2a35b
@dburkhardt
Fixing to_array_or_spmatrix for lists of numerics
669ad45
@dburkhardt
revert changes on toarray
0ee2754
@dburkhardt
Use @scottgigante fix for toarray
588de7e
@dburkhardt
Add check for numbers
13efb0d
@dburkhardt
Update #107 fix to set _vmin
c7fdec5
@scottgigante
MPL 3.3.0 deprecation fix for norm with vmin and vmax set
826a0fc
@scottgigante
Fix check_vmin_vmax for mpl 3.3 fix
55d34e3
@scottgigante
Cancel previous runs
7895cf3
dburkhardt and others added 24 commits December 15, 2020 14:58
@dburkhardt
Adding more complex toarray logic
a4d5b6d
@dburkhardt
Add install for ffmpeg and h5py
bd01594
@scottgigante
Fix vmax -> vmin typo
6cadd05
@scottgigante
Use private vmin/vmax in extend
53a9985
@scottgigante
Clean up numpy dtype inference
f4a3757
@dburkhardt
Random guess for h5 (add libhdf5-serial-dev)
8e45e0d
@dburkhardt
Merge branch 'dev' of https://github.com/KrishnaswamyLab/scprep into dev
b69e197
@dburkhardt
Replace scprep.run.install_bioconductor with import scprep.run
2aa12e1
@dburkhardt
Add R init to run_test.yml
47afad3
@scottgigante
Fix sce rpy2py if not sce
6ae5e5d
@scottgigante
Ignore verbose progress bar warnings
1fccc43
@scottgigante
Fix error message typo
db3e343
@scottgigante
deprecate path_length
96e06fc
@scottgigante
change omega
548bbe4
@scottgigante
print on assert failure
70b12fa
@scottgigante
fix path_length deprecation
cd34357
@scottgigante
flake8
0c3bce8
@scottgigante
fix scale kwarg
8ee17e0
@scottgigante
use lowess
bd0a241
@scottgigante
try loess instead of lowess
562eb98
@scottgigante
maxit 0 for loess
e05d85d
@scottgigante
allow kwargs
e7fd574
@scottgigante
use renv to install
dd32010
@scottgigante
Fix argument typo
98b9136
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Coverage Status

Coverage decreased (-1.009%) to 97.926% when pulling 98b9136 on dev into 3dc5ac3 on master.

@scottgigante scottgigante merged commit 37a1c92 into master Dec 22, 2020
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@scottgigante @coveralls @dburkhardt