v1.0.2 initial release

v1.0.2 (2023-07-31)

This is the initial release of the Splam code and documentation.

Documentation:

The link to the documentation: http://ccb.jhu.edu/splam/

Main features

• Trained deep residual convolutional neural network Splam model - Pytorch and Torchscript
• Extracting splice junctions in alignment files or introns in annotation files splam extract - doc link
• Scoring extracted splice junctions or introns using Splam model splam score - doc link
• Cleaning up spurious splice junctions in alignment files splam clean - doc link

Scripts for model training & testing

• The scripts for Splam model training, testing, and data analysis are available at this GitHub repository

PyPi release

• Splam v1.0.2 is also available on PyPi: https://pypi.org/manage/project/splam/release/1.0.2/