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Nextflow documentation #184

Merged
merged 10 commits into from
Jan 7, 2022
Merged

Nextflow documentation #184

merged 10 commits into from
Jan 7, 2022

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chasemc
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@chasemc chasemc commented Aug 4, 2021

Adds the basic steps on how to run Autometa using nextflow. Still a work in progress on more advanced configs.

Basic steps won't work unless #181 is merged (or when dev is eventually merged)

Replacing the explicit `conda env create` with curl downloading the `environment.yml` file and piping into `conda env create` to prevent documentation getting out of sync
@evanroyrees evanroyrees added documentation Improvements or additions to documentation nextflow Nextflow related issues/code labels Dec 21, 2021
🎨 Replace links to WiscEvan to KwanLab
🎨 Change NCBI database links to point to mentioned files rather than directory containing file
📝 Replace section headers following sphinx headers and sections.

See: https://docs.typo3.org/m/typo3/docs-how-to-document/main/en-us/WritingReST/HeadlinesAndSection.html#headlines-and-sections

📝 Fix incorrect bold formatting in 'Parameters to set every time' section
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👍 This looks good for now. I've fixed typos, formatting and grammar issues.

I'm sure we'll continue to iterate on this as others ask questions/require more info.

@evanroyrees evanroyrees merged commit ec822cf into dev Jan 7, 2022
@evanroyrees evanroyrees deleted the nextflow_documentation branch January 7, 2022 16:55
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