🐳💚📝 Add docker CI and update links #216
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- 📝 Update databases links fixes #175 - 🐳 Add docker.yml to .github/workflows - 🎨 Update jason-c-kwan username to jasonkwan
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Can you add your credentials to the Autometa repo to finish setting up the docker CI/CD workflow? To setup, pass in your credentials in to GitHub secrets so they may be used to login to DockerHub https://github.com/KwanLab/Autometa/settings/secrets/actions To fill in:
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| - bacteria single-copy-markers cutoffs - `link <https://raw.githubusercontent.com/WiscEvan/Autometa/dev/databases/markers/bacteria.single_copy.cutoffs?token=AGF3KQVL3J4STDT4TJQVDBS6GG5FE>`__ | ||
| - archaea single-copy-markers - `link <https://github.com/WiscEvan/Autometa/raw/dev/databases/markers/archaea.single_copy.hmm>`__ | ||
| - archaea single-copy-markers cutoffs - `link <https://raw.githubusercontent.com/WiscEvan/Autometa/dev/databases/markers/archaea.single_copy.cutoffs?token=AGF3KQXVUDFIH6ECVTYMZQS6GG5KO>`__ | ||
| - bacteria single-copy-markers - `link <https://raw.githubusercontent.com/KwanLab/Autometa/dev/autometa/databases/markers/bacteria.single_copy.hmm>`__ |
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Would go ahead and change dev to main.
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This may be a larger issue that needs to be addressed in the docs (cc @Sidduppal )
Once dev is merged into main, dev docs will contain main anyways
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I'll change these paths when merging dev into main. In the mean time, I do not want to provide broken links, as it seems others are currently attempting to run Autometa from the dev branch
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If there's not an issue for that already it might be worth creating one as a reminder
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Yeah, that works. There will be a number of merge conflicts to address during that merge, so I was thinking that would be a sufficient reminder to double check dev being changed to main in all files. Either works 🤷
…flow 🐳💚 Swap extract branch names for docker metadata-action (https://github.com/docker/metadata-action) :green_heart::art: Add logic to only push docker image if the commit was pushed to the branh (not a PR)
docker.ymlto.github/workflows- fixes Create GitHub Action for building and publishing docker images #191jason-c-kwanusername tojasonkwan