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@chienchi chienchi released this 04 Oct 18:25
· 54 commits to v1.5 since this release
v1.5.0
5c19090

New modules:

  1. Specialty Gene Profiling
  2. Qiime pipeline for amplicon data analysis

Updates:

  1. R version 2.15.3 to 3.2.2,
  2. KronaTools version 2.4 to 2.6,
  3. Bowtie2 2.1.0 to 2.2.6,
  4. gridExtra version 0.9.1 to 2.0.0
  5. Upgrade sratoolkit version from 2.4.4 to 2.5.4 which support proxy setup and make sra2fastq.pl work on pacbio and solid platform.
  6. SPAdes from 3.5.0 to 3.7.1 (with meta flag for metagenome)
  7. Update project dir by using secure code instead of project id
  8. Add email functions when job complete or shared to others
  9. Separate [system] configruation from edge_config.tmpl into sys.properties.
  10. MEGAHIT metagenome assembler.
  11. Sample metadata Input
  12. Many GUI features improvements
  13. Add MetaComp package installation.(https://github.com/seninp-bioinfo/MetaComp.).

Database update:

  1. GOTTCHA db version v20150825

Virtual Machine:

  1. VMware .ova file: ftp://ftp.lanl.gov/public/genome/EDGE/1.5/VirtualMachine/
  2. Docker: https://hub.docker.com/r/chienchilo/edge_v1.5/

Bugs fixes: batch submit bugs, tree view cutting issue, upload function fail when user management system is off, overly running taxonomy profiling tools in parallel... etc.

We are actively updating the documentation for the release. Please see http://edge.readthedocs.io/en/v1.5/

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