ezAlign v1.1b

• Restored non-protein back-mapping that was broken in v1.1

v1.1 release notes:

• Added protein complex examples and documentation
• Added support for multiple protein complex back-mapping
• Added support for protein-associated residues
• Improved protein back-mapping
• Improved position-restraints handling
• Various minor bug fixes

ezAlign v1.1

• Added protein complex examples and documentation
• Added support for multiple protein complex back-mapping
• Added support for protein-associated residues
• Improved protein back-mapping
• Improved position-restraints handling
• Various minor bug fixes

ezAlign v1.0

• Systems can now include a protein complex (-pp, -pi)
• Gromacs 2022 and later are now supported
• Gromacs versions earlier than 2022 are now unsupported
• Large systems (million+) are now supported (truncated .pdb index writes)
• Changed soft-core potential to Gapys from Beutler
• Removed some redundant soft-core relaxations
• Added support for command-line custom template topology files (-tt)
• Added support for gmx mdrun options (-suff)