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  1. Classify_Core-Accessory Classify_Core-Accessory Public

    python code to parse MUMmer output and classify genomic regions as 'core' or 'accessory' depending on whether a region aligns to a large enough set of other genome sequences.

    Python 1 1

  2. whole_genome_alignments whole_genome_alignments Public

    python scripts to generate to generate all-against-all alignments of a set of genomes

    Python 1

  3. FOSC_multi-speed-genome FOSC_multi-speed-genome Public

    Jupyter Notebook 2