This document contains code workflows, explaining how to perform the bioinformatics analysis described in "From GWAS to drug screening: repurposing antipsychotics for glioblastoma".
Wei-Zhi Lin, Yen-Chun Liu, Meng-Chang Lee, Chi-Tun Tang, Gwo-Jang Wu, Yu-Tien Chang, Chi-Ming Chu & Chia-Yang Shiau
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cell_line_info_19Q4 could be downloaded from "https://ndownloader.figshare.com/files/20237718".
treatment_info_19Q4 could be downloaded from "https://ndownloader.figshare.com/files/20237715".
prism_data_19Q could be downloaded from "https://ndownloader.figshare.com/files/20237709".
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An example-input could be copied from here: https://github.com/LinWZ-tw/g2d-prism/blob/e246e7f4466b12b836133b2759866a4872d03ebe/example-input-compounds-for-py.csv