Save manually classified components into txt files

[eurunuela]

Closes #57.

This PR adds the following new functionality to Rica:

• Manually accepted components are saved into a .txt file and their indices are comma-separated.
• Manually rejected components are saved into a .txt file and their indices are comma-separated.
• The manual_classification.tsv file is still saved for backward compatibility.

[netlify]

✅ Deploy Preview for rica-fmri ready!

Name	Link
🔨 Latest commit	148d444
🔍 Latest deploy log	https://app.netlify.com/sites/rica-fmri/deploys/644beba3428d750008ab64be
😎 Deploy Preview	https://deploy-preview-58--rica-fmri.netlify.app/
📱 Preview on mobile	Toggle QR Code... Use your smartphone camera to open QR code link.

---

To edit notification comments on pull requests, go to your Netlify site settings.

[eurunuela]

@jbteves @handwerkerd could you please test using the following link?

https://deploy-preview-58--rica-fmri.netlify.app/

[handwerkerd]

I just made some changes to ica_reclassify in https://github.com/jbteves/tedana/pull/42 and then this PR works well.

There is one minor issue I saw. Rica write out manual_classification.tsv. The file includes the I0XX classification identifiers that were removed from the DTM branch and replaced with descriptors in a classification_tags column. This isn't great because Rica is adding those I0XX values to a new column without a header.
For the DTM branch, classification_tags can include a comma separated string of elements so you could add ,manual reclassify to that string. This is fairly minor because ica_reclassify doesn't use your manual_classification.tsv and will correctly write out an internally consistent component table when run.

[eurunuela]

Just pushed the changes.

Now Rica will add , Manual reclassify with Rica to the classification_tags column.

What do you think @handwerkerd?

[handwerkerd]

I'm getting an error message:

$ npm install
$ npm start

Failed to compile.

Module not found: Error: Can't resolve 'react-helmet' in '/Users/handwerkerd/code/meica/rica/src'
WARNING in [eslint] 
src/Plots/Plots.js
  Line 225:14:  'i' is already defined                             no-redeclare
  Line 367:15:  'datasetIndex' is assigned a value but never used  no-unused-vars
  Line 381:15:  'datasetIndex' is assigned a value but never used  no-unused-vars

ERROR in ./src/index.js 6:0-38
Module not found: Error: Can't resolve 'react-helmet' in '/Users/handwerkerd/code/meica/rica/src'

webpack compiled with 1 error and 1 warning

I feel like I saw this before when I forgot to run npm install first, but not sure what's going on now.

[eurunuela]

It looks like I removed a dependency when fixing the merge conflict. Sorry about that.

Could you try now, please?

In any case, you don't need to try to build the project locally. You can try the deploy preview link given by the netlify bot at the top of this conversation.

[handwerkerd]

I just tried again. Locally, npm install; npm start still gives the same here. The deploy preview link did run. The classification_tag is filled correctly, but, when I saved the file, it's no longer changing the component classifications in any of the 3 files.

[eurunuela]

Sorry, my bad. I forgot I was using the rationale for the accepted and rejected files.

The last commit should have fixed this. Could you please try again @handwerkerd?

[handwerkerd]

It's all working now. I needed to delete the node_modules directory and (maybe) package-lock.json to have npm install; npm start work again, but that also works now. This should be ready to merge.

[eurunuela]

Thank you Dan!