Umbrella repository for managing and deploying neuroimaging pipelines and containers
nklab-fsl This Singularity container provides FSL v6.0.1 (FSLeyes, BASIL). It is Cuda compatible and so should be able to run eddy_cuda8.0 or eddy_cuda9.1. It also includes FSL v5.0.6 for reproducing HCP pipelines.
nklab-mrtrix This Singularity container provides MRTrix 3.0 RC3
nklab-freesurfer This Singularity container provides 3 versions of freesurfer - the stable v6.0.0 version, the current development version (this will vary depending on the build date) and the HCP version 5.3.0 used in HCP pipelines.
nklab-fsltrixsurf This Singularity container is an amalgamation of the three containers (nklab-fsl, nklab-mrtrix and nklab-freesurfer)
nklab-neuro-tools This Singularity container provides a comprehensive package of neuroimaging tools like FSL, MRtrix, AFNI, The HCP Pipelines, CIFTIFY, ANTS in one container.
nklab-simnibs A Singularity Container for SIMNIBS 2.1 for the Simulation of electric fields induced by TMS and tDCS
nklab-neuro-utils A Singularity/Docker container for converting MRI files into BIDS format
dicomutils working python code to transfer/route dicoms to XNAT.