Release v0.9.2 Core working pipelines · MRIresearch/PANpipelines

Improve parameter handling in aslprep, basil, qsiprep, noddi and fmriprep so that individual parameters can be overwritten or added more conveniently from the config file. Pass ^^^ to pass a parameter that doesn't take a value e.g. --stop-on-first-crash would be passed as {"--stop-on-first-crash" : "^^^"}. Pass ### to remove a default parameter passed normally.
Check that ROIs are not missing when generating measures in roi_mean_single.py
Enable passing of projects into panprocessing.py - this will allow shared projects to be handled as normal
Create short-hand <DEPENDENCY_DIR> variables for convenience in specification of config file.
Provide more explicit timing information in log files
Add fieldmap processing to BASIL using fmriprep 20.2.0 fieldmap output from both echos of ME GRE
Support non-linear inverse transforms when provided as FSL Warps

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