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While this sits here, just adding something I forgot to create an issue for, but stumbled upon at some point: if I remember well, amp2response crashes (segfault) when the provided mask (i.e. second argument) is 4-dimensional, even with the size of the 4th dimension being "1" (so the mask essentially being 3D).
As raised here (even though there's an upstream problem in that particular case).
Don't bother constructing transformation matrices when using the
-isotropic
option.Pre-determine the number of voxels in the mask, and pre-allocate
cat_transforms
andcat_data
rather than usingconservativeResize()
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