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cluster id cleaned in get_abundance_post_collapse #233
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Fixes #229 .
Change proposed in this request:
Clean cluster ids from cluster_report.csv by removing all the characters before transcript/ .
Testing:
Tested using the data in test_data folder.
test.collapsed.abundance.txt will obtained from this change was identical to the test.collapsed.abundance.txt obtained using cluster_report.csv cleaned by sed prior to be used with the current version of the script.
The results in the test_data folder seems to be an older version and do not exactly match the output of the current version of the script.
Contribution:
I am making this pull request as part of a work study at Cincinnati Children's Hospital Medical Center (CCHMC) © CCHMC 2022
@Magdoll Thank you for sharing these wonderful scripts!