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@Maize-Genetics-and-Genomics-Database

Maize-Genetics-and-Genomics-Database

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  1. FASSO FASSO Public

    FASSO: Functional Annotations using Sequence and Structure Orthology

    PHP 9 2

  2. PanEffect PanEffect Public

    PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) explore all possible amino acid substitutions and their variant e…

    JavaScript 9

  3. Pan-Genome Pan-Genome Public

    Pan-genome methods used by MaizeGDB for the pan-gene tab

    Shell 5 1

  4. pedigreenet pedigreenet Public

    The MaizeGDB Pedigree Viewer is developed to display pedigree relationships between maize lines in a network representation. The Viewer is based on a pedigree network of 5487 maize lines that are c…

    PHP 2

  5. maizedig maizedig Public

    MaizeDIG - Maize Database of Images and Genomes. This tool allows users to tag phenotypes in images and link them to specific genes.

    HTML 2 3

  6. qTeller qTeller Public

    Forked from jschnable/qTeller

    RNA-seq processing pipeline and modular web interface

    Python 1 2

Repositories

Showing 10 of 10 repositories
  • pandagma_scripts Public

    Holds scripts for preparing files for and running pandagma on Ceres, including config and sbatch scripts.

    Maize-Genetics-and-Genomics-Database/pandagma_scripts’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 4, 2024
  • SNPversity2.0 Public

    SNPversity2.0 is a web-based tool to display maize variant data.

    Maize-Genetics-and-Genomics-Database/SNPversity2.0’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Sep 24, 2024
  • qTeller Public Forked from jschnable/qTeller

    RNA-seq processing pipeline and modular web interface

    Maize-Genetics-and-Genomics-Database/qTeller’s past year of commit activity
    Python 1 3 0 0 Updated Aug 27, 2024
  • PanEffect Public

    PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) explore all possible amino acid substitutions and their variant effects for a reference genome, and (2) view the natural variation and their effects across a pangenome.

    Maize-Genetics-and-Genomics-Database/PanEffect’s past year of commit activity
    JavaScript 9 MIT 0 0 0 Updated Jan 30, 2024
  • FASSO Public

    FASSO: Functional Annotations using Sequence and Structure Orthology

    Maize-Genetics-and-Genomics-Database/FASSO’s past year of commit activity
    PHP 9 MIT 2 2 0 Updated Jan 17, 2023
  • Pan-Genome Public

    Pan-genome methods used by MaizeGDB for the pan-gene tab

    Maize-Genetics-and-Genomics-Database/Pan-Genome’s past year of commit activity
    Shell 5 1 0 0 Updated Mar 26, 2021
  • gcvit Public Forked from LegumeFederation/gcvit

    CViT based tool for visualising VCF files.

    Maize-Genetics-and-Genomics-Database/gcvit’s past year of commit activity
    JavaScript 1 MIT 8 0 0 Updated May 29, 2020
  • maizedig Public

    MaizeDIG - Maize Database of Images and Genomes. This tool allows users to tag phenotypes in images and link them to specific genes.

    Maize-Genetics-and-Genomics-Database/maizedig’s past year of commit activity
    HTML 2 3 0 3 Updated Oct 30, 2019
  • pedigreenet Public

    The MaizeGDB Pedigree Viewer is developed to display pedigree relationships between maize lines in a network representation. The Viewer is based on a pedigree network of 5487 maize lines that are currently available in the MaizeGDB Stock Pages. The tool allows the user to apply a number of filters, select or upload their own breeding relationshi…

    Maize-Genetics-and-Genomics-Database/pedigreenet’s past year of commit activity
    PHP 2 Apache-2.0 0 0 0 Updated Dec 18, 2018
  • haplotypes Public

    A Haplotype Viewer

    Maize-Genetics-and-Genomics-Database/haplotypes’s past year of commit activity
    R 1 1 0 0 Updated Nov 2, 2018

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