Custom-scripts-for-bonobo-project

This repository contains scripts about ILS analysis in the paper (XXX).

General information

1. ILS_analysis_oranguan_500bp folder contains scripts used to generate 500bp segment trees.

2. hot_spot folder contains scripts used to calculate ILS inter-distance and to simulate the null distribution of ILS inter-distance (credits to Dr. Arvis Sulovari).

Citations

XXX
Mao, Yafei, et al. "TREEasy: an automated workflow to infer gene trees, species trees, and phylogenetic networks from multilocus data." (2020): 832-840.

Warning

This is not an automatic pipeline for ILS analysis, yet, this repository contains crucial scripts for ILS analysis in the paper (xxx).