PortPred

Tool for accurate transporter predictor and the related substrate category

The used dataset are available in TrSSP_dataset, fTrans_dataset, peroxisomal_proteins_datasets and PortPred_dataset

The notebook PortPred_tool-Develop contains a working example with the analysis performed for the peroxisomal proteins validation set

A demo notebook is also available (PortPred_demo)

Name		Name	Last commit message	Last commit date
Latest commit History 67 Commits
PortPred_dataset		PortPred_dataset
TrSSP_datast		TrSSP_datast
fTrans_dataset/Dataset		fTrans_dataset/Dataset
pero_trans/pero_trans		pero_trans/pero_trans
peroxisomal_proteins_dataset		peroxisomal_proteins_dataset
LICENSE		LICENSE
PortPred_demo.ipynb		PortPred_demo.ipynb
PortPred_tool-Develop.ipynb		PortPred_tool-Develop.ipynb
README.md		README.md
Transp_eg.fasta		Transp_eg.fasta
binary_classification_LR_all_features_model.sav		binary_classification_LR_all_features_model.sav
binary_classification_LR_hybrid_features_model.sav		binary_classification_LR_hybrid_features_model.sav
environment.yml		environment.yml
portpred.py		portpred.py
requirements.txt		requirements.txt
utils_trans_2.py		utils_trans_2.py