This repository contains code to perform alignment, counting and downstream analysis of data generated on gamma delta T cells from young and old animals.
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Preprocessing contains a Makefile to map sequencing reads stored in paired end .fastq to the mouse genome and formulas to align these files for clonotype analysis.
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Figures contains scripts that reproduce the final figures for the paper.
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Analysis contains extra scripts to perform data analysis.
The preprint can be obtained from: