Highthroughput

Docker Container for Analysis of High Throughput Sequencing Data training course

To run the container for the first time with generic graphics:

xhost +
docker run -it -v /tmp/.X11-unix:/tmp/.X11-unix:rw --privileged -e DISPLAY=unix$DISPLAY \
-v $HOME/:/home/training/ --device /dev/dri --privileged --name highthroughput \
ebitraining/highthroughput:latest

To run with Nvidia graphics, add the following option:

-v /usr/lib/nvidia-340:/usr/lib/nvidia-340 -v /usr/lib32/nvidia-340:/usr/lib32/nvidia-340

To resume using an container:

docker exec -it highthroughput /bin/bash

To build the container:

docker build -f ./Dockerfile -t highthroughput .
docker tag highthroughput ebitraining/highthroughput:latest
docker push ebitraining/highthroughput:latest