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Add metabolite analysis #51

Add metabolite analysis

Add metabolite analysis #51

Workflow file for this run

name: Python package
on:
push:
branches:
- main
pull_request:
branches:
- main
jobs:
build:
name: Build for (${{ matrix.python-version }}, ${{ matrix.os }})
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: ['ubuntu-latest', 'windows-latest']
python-version: ['3.12']
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Python info
shell: bash -e {0}
run: |
which python
python --version
- name: Upgrade pip and install dependencies
run: |
python -m pip install --upgrade pip setuptools
python -m pip install .[dev,publishing]
- name: Run unit tests
run: python -m pytest -v
- name: Verify that we can build the package
run: python -m build
lint:
name: Linting build
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: 3.9
- name: Python info
shell: bash -e {0}
run: |
which python
python --version
- name: Upgrade pip and install dependencies
run: |
python -m pip install --upgrade pip setuptools
python -m pip install .[dev,publishing]
- name: Check style against standards using ruff
run: ruff check .