Add metabolite analysis #51
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name: Python package | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
jobs: | |
build: | |
name: Build for (${{ matrix.python-version }}, ${{ matrix.os }}) | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ['ubuntu-latest', 'windows-latest'] | |
python-version: ['3.12'] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Python info | |
shell: bash -e {0} | |
run: | | |
which python | |
python --version | |
- name: Upgrade pip and install dependencies | |
run: | | |
python -m pip install --upgrade pip setuptools | |
python -m pip install .[dev,publishing] | |
- name: Run unit tests | |
run: python -m pytest -v | |
- name: Verify that we can build the package | |
run: python -m build | |
lint: | |
name: Linting build | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v3 | |
with: | |
python-version: 3.9 | |
- name: Python info | |
shell: bash -e {0} | |
run: | | |
which python | |
python --version | |
- name: Upgrade pip and install dependencies | |
run: | | |
python -m pip install --upgrade pip setuptools | |
python -m pip install .[dev,publishing] | |
- name: Check style against standards using ruff | |
run: ruff check . |