QuickScripts

This repository contains various quick scripts useful for file parsing, tree manipulation, and other miscellaneous scripts.

The link to the documentation can be found below.

Name		Name	Last commit message	Last commit date
Latest commit History 72 Commits
docs		docs
.gitignore		.gitignore
.readthedocs.yaml		.readthedocs.yaml
batch_histogram.py		batch_histogram.py
collapse_root.py		collapse_root.py
compare_trees.py		compare_trees.py
decompose.py		decompose.py
decomposer.py		decomposer.py
draw_branch_histogram.py		draw_branch_histogram.py
draw_support_histogram.py		draw_support_histogram.py
enter_virtualenv.sh		enter_virtualenv.sh
extract_feature_vector.py		extract_feature_vector.py
fasta_to_phylip.py		fasta_to_phylip.py
fix_mafft_tree.py		fix_mafft_tree.py
get_cluster_size_histogram.py		get_cluster_size_histogram.py
gmm_cluster.py		gmm_cluster.py
induce_alignment.py		induce_alignment.py
induce_constraint_trees.py		induce_constraint_trees.py
induce_tree.py		induce_tree.py
join_multiline_tree.py		join_multiline_tree.py
mldist_to_treemerge.py		mldist_to_treemerge.py
newick_to_nexus.py		newick_to_nexus.py
parse_iqtree_file.py		parse_iqtree_file.py
random_sample_sequence.py		random_sample_sequence.py
random_seed_generator.py		random_seed_generator.py
relabel_distance_matrix.py		relabel_distance_matrix.py
relabel_tree.py		relabel_tree.py
remove_labels.py		remove_labels.py
resolve_polytomy.py		resolve_polytomy.py
resolve_tree.py		resolve_tree.py
rf_rate_analysis.py		rf_rate_analysis.py
scatter_support_branch_length.py		scatter_support_branch_length.py
split_in_two.py		split_in_two.py
split_testing_training.py		split_testing_training.py
tree_to_dist.py		tree_to_dist.py
ungap_fasta.py		ungap_fasta.py

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