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1. bamsurgeon bamsurgeon Public

   Forked from adamewing/bamsurgeon

   tools for adding mutations to existing .bam files, used for testing mutation callers

   Python

2. tebreak tebreak Public

   Forked from adamewing/tebreak

   Find and characterise transposable element insertions

   Python

3. GRIPper GRIPper Public

   Forked from adamewing/GRIPper

   Find non-reference processed pseudogene insertions from discordant read pair mappings

   Python

4. ITIS ITIS Public

   Forked from Chuan-Jiang/ITIS

   tool to Identify TE Insertion Sites in genome

   Perl

5. jitterbug jitterbug Public

   Forked from elzbth/jitterbug

   Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.

   Python

6. tetracker tetracker Public

   Forked from institut-de-genomique/tetracker

   TE-Tracker, a program dedicated to the de-novo discovery of transposition events.

   Perl