main.yml

name: CI
on:
  push:
    branches: [ main ]
  pull_request:
    branches: [ main ]
  # Allow rebuilds via API.
  repository_dispatch:
    types: rebuild


env:
  CACHE_NUMBER: 0  # increase to reset cache manually

concurrency:
  group: run_tests-${{ github.ref }}
  cancel-in-progress: true

jobs:
  build:
    strategy:
      matrix:
        include:
          - os: ubuntu-latest
            label: linux-64
            prefix: /usr/share/miniconda3/envs/my-env

          #- os: macos-latest
          #  label: osx-64
          #  prefix: /Users/runner/miniconda3/envs/my-env

          #- os: windows-latest
          #  label: win-64
          #  prefix: C:\Miniconda3\envs\my-env

    name: ${{ matrix.label }}
    runs-on: ${{ matrix.os }}
    steps:
      - uses: actions/checkout@main
        with:
          fetch-depth: 0

      - name: Install Conda environment with Micromamba
        uses: mamba-org/provision-with-micromamba@main
        with:
          environment-file: environment.yml
          environment-name: mfa
          extra-specs: |
            python=3.9

      - name: Configure mfa
        shell: bash -l {0}
        run: python -m montreal_forced_aligner configure --disable_auto_server

      - name: Initialize database
        shell: bash -l {0}
        run: python -m montreal_forced_aligner server init -p test

      - name: Check database config
        shell: bash -l {0}
        run: cat ~/Documents/MFA/pg_mfa_test/postgresql.conf

      - name: Check init database log
        shell: bash -l {0}
        run: cat ~/Documents/MFA/pg_init_log_test.txt

      - name: Check database start log
        shell: bash -l {0}
        run: cat ~/Documents/MFA/pg_log_test.txt

      - name: Run tests
        env:
          GITHUB_TOKEN: ${{ secrets.MFA_GITHUB_TOKEN }}
        shell: bash -l {0}
        run: pytest -x ./tests

      - name: Stop database
        shell: bash -l {0}
        run: python -m montreal_forced_aligner server stop -p test

      - name: Check init database log
        shell: bash -l {0}
        run: cat ~/Documents/MFA/pg_init_log_test.txt

      - name: Check database start log
        shell: bash -l {0}
        run: cat ~/Documents/MFA/pg_log_test.txt

      - name: "Upload coverage to Codecov"
        uses: "codecov/codecov-action@v3"
        with:
          file: ./coverage.xml
          fail_ci_if_error: false