Add GitHub Actions bot workflow to fix code linting from a PR comment #2082
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vladsavelyev
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core: infrastructure
ewels
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@multiqc-bot changelog |
ewels
reviewed
Sep 28, 2023
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| - name: Run pre-commit | ||
| run: | | ||
| pre-commit run --all-files |
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I think this needs an || true as if it does anything it raises an exit code 1 and the rest of the workflow is cancelled 😅
a-frantz
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Oct 2, 2023
* master: Just run CI on the oldest + newest supported Python versions (MultiQC#2074) Picard: fix parsing mixed strings/numbers, account for trailing tab (MultiQC#2083) FastQC: add top overrepresented sequences table (MultiQC#2075) Add GitHub Actions bot workflow to fix code linting from a PR comment (MultiQC#2082) Use custom exception type instead of `UserWarning` when no samples are found. (MultiQC#2049) Lint modules for missing `self.add_software_version` (MultiQC#2081) Changelog bot: Update docs (MultiQC#2077) Changelog action: remove `.capitalize()`, add changelog entry (MultiQC#2080) Add action to populate the change log from PR titles triggered by `@multiqc-bot changelog` (MultiQC#2025) # Conflicts: # CHANGELOG.md # multiqc/modules/ngsderive/ngsderive.py
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Fixes #1988
A bot command triggered on a comment "@multiqc-bot fix linting". Inspired by nf-core/tools, though installs and runs pre-commit hooks on all files instead of running separate actions, so we control all linting through the single file
.pre-commit-config.yaml.I also updated the linters' versions.