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@Murali-group

T. M. Murali's Research Group at Virginia Tech

Computational Systems Biology

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  1. Beeline Beeline Public

    BEELINE: evaluation of algorithms for gene regulatory network inference

    Python 172 53

  2. SARS-CoV-2-network-analysis SARS-CoV-2-network-analysis Public

    Software framework for analysis of SARS-CoV-2 molecular networks

    Jupyter Notebook 6 3

  3. GraphSpace GraphSpace Public

    The interactive graph sharing website.

    Python 30 41

  4. PathLinker PathLinker Public

    Connect the dots in networks.

    Python 17 9

  5. BoolODE BoolODE Public

    Git Repo for simulating Boolean Models

    Python 32 15

  6. PathLinker-Cytoscape PathLinker-Cytoscape Public

    Cytoscape plugin for PathLinker

    Java 3 5

Repositories

Showing 10 of 23 repositories
  • graph-split Public

    A module to split a graph in different ways (for deep learning applications)

    Murali-group/graph-split’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 25, 2024
  • Beeline Public

    BEELINE: evaluation of algorithms for gene regulatory network inference

    Murali-group/Beeline’s past year of commit activity
    Python 172 GPL-3.0 53 33 19 Updated Aug 25, 2024
  • BoolODE Public

    Git Repo for simulating Boolean Models

    Murali-group/BoolODE’s past year of commit activity
    Python 32 GPL-3.0 15 9 8 Updated Jun 11, 2024
  • ICoN Public

    Integration using Co-attention across Biological Networks

    Murali-group/ICoN’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Mar 7, 2024
  • GraphSpace Public

    The interactive graph sharing website.

    Murali-group/GraphSpace’s past year of commit activity
    Python 30 GPL-2.0 41 82 (1 issue needs help) 22 Updated Aug 6, 2023
  • halp Public

    Hypergraph Algorithms Package

    Murali-group/halp’s past year of commit activity
    Python 95 GPL-3.0 21 4 2 Updated Jul 6, 2023
  • annotation_prediction Public

    Algorithms for predicting gene and protein annotations, e.g., to the GO and to the HPO.

    Murali-group/annotation_prediction’s past year of commit activity
    Python 2 GPL-3.0 4 0 2 Updated Jul 6, 2023
  • SARS-CoV-2-network-analysis Public

    Software framework for analysis of SARS-CoV-2 molecular networks

    Murali-group/SARS-CoV-2-network-analysis’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 3 6 4 Updated Jul 6, 2023
  • tox_signaling_networks Public

    Code for building and evaluating toxicant signaling networks.

    Murali-group/tox_signaling_networks’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 5, 2023
  • BeeHive Public

    A general platform for multiple types of network biology workflows

    Murali-group/BeeHive’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Dec 15, 2022
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