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@MycoAI

MycoAI

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MycoAI

Using AI and machine learning to analyze patterns in fungal biodiversity.

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  1. MycoAI MycoAI Public

    Python 8 3

  2. protaxfungi protaxfungi Public

    Forked from psomervuo/protaxfungi

    Probabilistic classification of fungi ITS

  3. UNITE_ITSClassifier UNITE_ITSClassifier Public

    Forked from terrimporter/UNITE_ITSClassifier

    Fungal UNITE ITS reference set formatted for the Ribosomal Database Project (RDP) classifier.

    Perl

  4. fungiclassifiers fungiclassifiers Public

    Forked from vuthuyduong/fungiclassifiers

    This repository employs Convolutional Neural Networks (CNNs) and Deep Belief Networks (DBNs) for fungal identification and classification, comparing them with BLAST and RDP classifiers

    Python

  5. dnabarcoder dnabarcoder Public

    Forked from vuthuyduong/dnabarcoder

    This repository is used to compute similarity cutoffs for different clades of fungi and other organisms. These computed similarity cutoffs are then utilized for fungal identification and classifica…

    Python

  6. fMLC fMLC Public

    Forked from vuthuyduong/fMLC

    This tool is designed to cluster and to compute a similarity structure for a large dataset of DNA sequences for visualization. For small datasets containing up to hundreds of thousands of sequences…

    C++

Repositories

Showing 10 of 10 repositories
  • MycoAI.github.io Public Forked from niklasbuschmann/contrast

    MycoAI's website

    MycoAI/MycoAI.github.io’s past year of commit activity
    JavaScript 0 Unlicense 2,143 0 0 Updated Nov 13, 2024
  • taxotagger Public

    DNA taxonomy identification, powered by deep learning and semantic search

    MycoAI/taxotagger’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 29, 2024
  • taxotagger-webapp Public

    Webapp for TaxoTagger. Try the demo at http://mycoai.org

    MycoAI/taxotagger-webapp’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Oct 24, 2024
  • MycoAI Public
    MycoAI/MycoAI’s past year of commit activity
    Python 8 MIT 3 3 0 Updated Sep 27, 2024
  • .github Public

    Repository for GH organization scaffolding

    MycoAI/.github’s past year of commit activity
    0 0 0 0 Updated Feb 14, 2024
  • dnabarcoder Public Forked from vuthuyduong/dnabarcoder

    This repository is used to compute similarity cutoffs for different clades of fungi and other organisms. These computed similarity cutoffs are then utilized for fungal identification and classification using BLAST.

    MycoAI/dnabarcoder’s past year of commit activity
    Python 0 Apache-2.0 5 0 0 Updated Sep 13, 2023
  • fMLC Public Forked from vuthuyduong/fMLC

    This tool is designed to cluster and to compute a similarity structure for a large dataset of DNA sequences for visualization. For small datasets containing up to hundreds of thousands of sequences, we can use dnabarcoder.

    MycoAI/fMLC’s past year of commit activity
    C++ 0 GPL-3.0 1 0 0 Updated Jun 15, 2022
  • UNITE_ITSClassifier Public Forked from terrimporter/UNITE_ITSClassifier

    Fungal UNITE ITS reference set formatted for the Ribosomal Database Project (RDP) classifier.

    MycoAI/UNITE_ITSClassifier’s past year of commit activity
    Perl 0 1 0 0 Updated Dec 17, 2021
  • fungiclassifiers Public Forked from vuthuyduong/fungiclassifiers

    This repository employs Convolutional Neural Networks (CNNs) and Deep Belief Networks (DBNs) for fungal identification and classification, comparing them with BLAST and RDP classifiers

    MycoAI/fungiclassifiers’s past year of commit activity
    Python 0 Apache-2.0 5 0 0 Updated Dec 3, 2021
  • protaxfungi Public Forked from psomervuo/protaxfungi

    Probabilistic classification of fungi ITS

    MycoAI/protaxfungi’s past year of commit activity
    0 5 0 0 Updated Aug 10, 2018

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