Problems encountered in compiling and installing NCL under macOS #130
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|
Hi,
If you can share the file with me, I will take a look. If its not too
large, feel free to email it directly to me. Otherwise, and option is to
upload it to our FTP site:
http://ncl.ucar.edu/ftp_files.shtml
Rick
…On Sun, May 3, 2020 at 1:44 AM Yiwei2020 ***@***.***> wrote:
*Describe the bug*
Hello there,
I encountered some problems when compiling and installing NCL under macOS
10.15. When I finished the compilation, I tried to read a GRIB2 file
through NCL and encountered a "Segmentation fault: 11" error. I checked the
relevant information and found that this error was caused by a pointer
variable being directly passed into the function without allocating memory.
I have no way to solve this problem, can you help me?
In addition, my GCC version is 9.3. Other dependencies all install the NCL
recommended version.
*Provide the following:*
a=addfile("fnl_20190312_18_00.grib2","r")
fnl_20190312_18_00.grib2 from rda.ucar.edu
*Computing environment*
- OS: Mac
- OS version:MacOS 10.15.4
- NCL Version: 6.6.2
- Installation method:built from source
*Additional context*
Add any other context about the problem here.
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Hello, I think this is not a problem with the grib2 file. This error occurs when I open any grib2 file. But the same file will not go wrong in the Linux environment.
I already upload it in ftp.cgd.ucar.edu/incoming/fnl_20190312_18_00.grib2
------------------ Original ------------------
From: "Rick Brownrigg"<notifications@github.com>;
Date: Mon, May 4, 2020 00:14 AM
To: "NCAR/ncl"<ncl@noreply.github.com>;
Cc: "Yiwei2020"<i@nui.st>; "Author"<author@noreply.github.com>;
Subject: Re: [NCAR/ncl] Problems encountered in compiling and installing NCL under macOS (#130)
Hi,
If you can share the file with me, I will take a look. If its not too
large, feel free to email it directly to me. Otherwise, and option is to
upload it to our FTP site:
http://ncl.ucar.edu/ftp_files.shtml
Rick
On Sun, May 3, 2020 at 1:44 AM Yiwei2020 <notifications@github.com> wrote:
> *Describe the bug*
> Hello there,
> I encountered some problems when compiling and installing NCL under macOS
> 10.15. When I finished the compilation, I tried to read a GRIB2 file
> through NCL and encountered a "Segmentation fault: 11" error. I checked the
> relevant information and found that this error was caused by a pointer
> variable being directly passed into the function without allocating memory.
> I have no way to solve this problem, can you help me?
> In addition, my GCC version is 9.3. Other dependencies all install the NCL
> recommended version.
>
> *Provide the following:*
> a=addfile("fnl_20190312_18_00.grib2","r")
> fnl_20190312_18_00.grib2 from rda.ucar.edu
>
> *Computing environment*
>
> - OS: Mac
> - OS version:MacOS 10.15.4
> - NCL Version: 6.6.2
> - Installation method:built from source
>
> *Additional context*
> Add any other context about the problem here.
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <#130>, or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/ADLWOXU3DX3S2NP56GDPRMDRPUOGHANCNFSM4MYAPMPQ>
> .
>
—
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub, or unsubscribe.
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Hi,
I was able to open that file just fine on my Mac, using NCL6.6.2.
Similarly, I had built it with gcc 9.2. I presume you followed the
directions for building grib support:
http://ncl.ucar.edu/Download/build_from_src.shtml#GRIB2
specifically, you downloaded our patch to the grib library:
wget http://www.ncl.ucar.edu/Download/files/g2clib-1.6.0-patch.tar.gz
I had problems getting the supporting jasper library to compile, and I
had to make minor modifications the source code:
./src/libjasper/jpg/jpg_dummy.c, and replace function signatures for
jpg_encode/jpg_decode with
"const char*" args rather than "char*" args.
Is there a reason you need/want to build from source, rather than do
an install from conda? That might save you some grief.
Rick
…On Sun, May 3, 2020 at 12:24 PM Yiwei2020 ***@***.***> wrote:
Hello, I think this is not a problem with the grib2 file. This error
occurs when I open any grib2 file. But the same file will not go wrong in
the Linux environment.
I already upload it in
ftp.cgd.ucar.edu/incoming/fnl_20190312_18_00.grib2
------------------ Original ------------------
From: "Rick ***@***.***>;
Date: Mon, May 4, 2020 00:14 AM
To: ***@***.***>;
Cc: ***@***.***>; ***@***.***>;
Subject: Re: [NCAR/ncl] Problems encountered in compiling and
installing NCL under macOS (#130)
Hi,
If you can share the file with me, I will take a look. If its not too
large, feel free to email it directly to me. Otherwise, and option is to
upload it to our FTP site:
http://ncl.ucar.edu/ftp_files.shtml
Rick
On Sun, May 3, 2020 at 1:44 AM Yiwei2020 ***@***.***>
wrote:
> *Describe the bug*
> Hello there,
> I encountered some problems when compiling and installing NCL under
macOS
> 10.15. When I finished the compilation, I tried to read a GRIB2 file
> through NCL and encountered a "Segmentation fault: 11" error. I
checked the
> relevant information and found that this error was caused by a
pointer
> variable being directly passed into the function without allocating
memory.
> I have no way to solve this problem, can you help me?
> In addition, my GCC version is 9.3. Other dependencies all install
the NCL
> recommended version.
>
> *Provide the following:*
> a=addfile("fnl_20190312_18_00.grib2","r")
> fnl_20190312_18_00.grib2 from rda.ucar.edu
>
> *Computing environment*
>
> - OS: Mac
> - OS version:MacOS 10.15.4
> - NCL Version: 6.6.2
> - Installation method:built from source
>
> *Additional context*
> Add any other context about the problem here.
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <#130>, or unsubscribe
> <
https://github.com/notifications/unsubscribe-auth/ADLWOXU3DX3S2NP56GDPRMDRPUOGHANCNFSM4MYAPMPQ>
> .
>
—
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub, or unsubscribe.
—
You are receiving this because you commented.
Reply to this email directly, view it on GitHub
<#130 (comment)>, or
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hello
can you shell your environment variable like CFLAGS and FFLAGS?
thanks your help
发自我的iPhone
… 在 2020年5月4日，23:36，Rick Brownrigg ***@***.***> 写道：
Hi,
I was able to open that file just fine on my Mac, using NCL6.6.2.
Similarly, I had built it with gcc 9.2. I presume you followed the
directions for building grib support:
http://ncl.ucar.edu/Download/build_from_src.shtml#GRIB2
specifically, you downloaded our patch to the grib library:
wget http://www.ncl.ucar.edu/Download/files/g2clib-1.6.0-patch.tar.gz
I had problems getting the supporting jasper library to compile, and I
had to make minor modifications the source code:
./src/libjasper/jpg/jpg_dummy.c, and replace function signatures for
jpg_encode/jpg_decode with
"const char*" args rather than "char*" args.
Is there a reason you need/want to build from source, rather than do
an install from conda? That might save you some grief.
Rick
On Sun, May 3, 2020 at 12:24 PM Yiwei2020 ***@***.***> wrote:
> Hello, I think this is not a problem with the grib2 file. This error
> occurs when I open any grib2 file. But the same file will not go wrong in
> the Linux environment.
> I already upload it in
> ftp.cgd.ucar.edu/incoming/fnl_20190312_18_00.grib2
>
>
> ------------------ Original ------------------
> From: "Rick ***@***.***>;
> Date: Mon, May 4, 2020 00:14 AM
> To: ***@***.***>;
> Cc: ***@***.***>; ***@***.***>;
>
> Subject: Re: [NCAR/ncl] Problems encountered in compiling and
> installing NCL under macOS (#130)
>
>
>
>
>
> Hi,
>
> If you can share the file with me, I will take a look. If its not too
> large, feel free to email it directly to me. Otherwise, and option is to
> upload it to our FTP site:
>
> http://ncl.ucar.edu/ftp_files.shtml
>
> Rick
>
>
> On Sun, May 3, 2020 at 1:44 AM Yiwei2020 ***@***.***>
> wrote:
>
> > *Describe the bug*
> > Hello there,
> > I encountered some problems when compiling and installing NCL under
> macOS
> > 10.15. When I finished the compilation, I tried to read a GRIB2 file
> > through NCL and encountered a "Segmentation fault: 11" error. I
> checked the
> > relevant information and found that this error was caused by a
> pointer
> > variable being directly passed into the function without allocating
> memory.
> > I have no way to solve this problem, can you help me?
> > In addition, my GCC version is 9.3. Other dependencies all install
> the NCL
> > recommended version.
> >
> > *Provide the following:*
> > a=addfile("fnl_20190312_18_00.grib2","r")
> > fnl_20190312_18_00.grib2 from rda.ucar.edu
> >
> > *Computing environment*
> >
> > - OS: Mac
> > - OS version:MacOS 10.15.4
> > - NCL Version: 6.6.2
> > - Installation method:built from source
> >
> > *Additional context*
> > Add any other context about the problem here.
> >
> > —
> > You are receiving this because you are subscribed to this thread.
> > Reply to this email directly, view it on GitHub
> > <#130>, or unsubscribe
> > <
> https://github.com/notifications/unsubscribe-auth/ADLWOXU3DX3S2NP56GDPRMDRPUOGHANCNFSM4MYAPMPQ>
>
> > .
> >
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub, or unsubscribe.
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
> <#130 (comment)>, or
> unsubscribe
> <https://github.com/notifications/unsubscribe-auth/ADLWOXTHAJHILH5XLYRCLI3RPWZGXANCNFSM4MYAPMPQ>
> .
>
—
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Reply to this email directly, view it on GitHub, or unsubscribe.
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These are from the file $NRC_SRC_ROOT/config/Darwin:
#define HdfDefines -DDARWIN
#define StdDefines -DSYSV -D_POSIX_SOURCE -D_XOPEN_SOURCE
#define Cstatic
#define Cdynamic
#define CppCommand '/usr/bin/cpp -traditional'
#define CCompiler gcc
#define FCompiler gfortran
#define CtoFLibraries -lgfortran -lm
#define CtoFLibrariesUser -lgfortran -lm
#define CcOptions -fPIC -ansi -fopenmp
#define FcOptions -fPIC -fopenmp
#define XToolLibrary -lXt -lSM -lICE
#define BuildShared NO
#define XLibrary -lXpm -lX11 -lXext
#define LibSearchUser -L/usr/X11R6/lib -L/sw/lib
#define IncSearchUser -I/usr/X11R6/include -I/sw/include
#define ArchRecLibSearch -L/usr/X11R6/lib -L/sw/lib
#define ArchRecIncSearch -I/usr/X11R6/include -I/sw/include
…On Mon, May 4, 2020 at 12:37 PM Yiwei2020 ***@***.***> wrote:
hello
can you shell your environment variable like CFLAGS and FFLAGS?
thanks your help
发自我的iPhone
> 在 2020年5月4日，23:36，Rick Brownrigg ***@***.***> 写道：
>
>
> Hi,
>
> I was able to open that file just fine on my Mac, using NCL6.6.2.
> Similarly, I had built it with gcc 9.2. I presume you followed the
> directions for building grib support:
>
> http://ncl.ucar.edu/Download/build_from_src.shtml#GRIB2
>
> specifically, you downloaded our patch to the grib library:
>
> wget http://www.ncl.ucar.edu/Download/files/g2clib-1.6.0-patch.tar.gz
>
> I had problems getting the supporting jasper library to compile, and I
> had to make minor modifications the source code:
>
> ./src/libjasper/jpg/jpg_dummy.c, and replace function signatures for
> jpg_encode/jpg_decode with
> "const char*" args rather than "char*" args.
>
> Is there a reason you need/want to build from source, rather than do
> an install from conda? That might save you some grief.
>
> Rick
>
>
> On Sun, May 3, 2020 at 12:24 PM Yiwei2020 ***@***.***>
wrote:
>
> > Hello, I think this is not a problem with the grib2 file. This error
> > occurs when I open any grib2 file. But the same file will not go wrong
in
> > the Linux environment.
> > I already upload it in
> > ftp.cgd.ucar.edu/incoming/fnl_20190312_18_00.grib2
> >
> >
> > ------------------ Original ------------------
> > From: "Rick ***@***.***>;
> > Date: Mon, May 4, 2020 00:14 AM
> > To: ***@***.***>;
> > Cc: ***@***.***>; ***@***.***
>;
> >
> > Subject: Re: [NCAR/ncl] Problems encountered in compiling and
> > installing NCL under macOS (#130)
> >
> >
> >
> >
> >
> > Hi,
> >
> > If you can share the file with me, I will take a look. If its not too
> > large, feel free to email it directly to me. Otherwise, and option is
to
> > upload it to our FTP site:
> >
> > http://ncl.ucar.edu/ftp_files.shtml
> >
> > Rick
> >
> >
> > On Sun, May 3, 2020 at 1:44 AM Yiwei2020 ***@***.***>
> > wrote:
> >
> > > *Describe the bug*
> > > Hello there,
> > > I encountered some problems when compiling and installing NCL
under
> > macOS
> > > 10.15. When I finished the compilation, I tried to read a GRIB2
file
> > > through NCL and encountered a "Segmentation fault: 11" error. I
> > checked the
> > > relevant information and found that this error was caused by a
> > pointer
> > > variable being directly passed into the function without
allocating
> > memory.
> > > I have no way to solve this problem, can you help me?
> > > In addition, my GCC version is 9.3. Other dependencies all install
> > the NCL
> > > recommended version.
> > >
> > > *Provide the following:*
> > > a=addfile("fnl_20190312_18_00.grib2","r")
> > > fnl_20190312_18_00.grib2 from rda.ucar.edu
> > >
> > > *Computing environment*
> > >
> > > - OS: Mac
> > > - OS version:MacOS 10.15.4
> > > - NCL Version: 6.6.2
> > > - Installation method:built from source
> > >
> > > *Additional context*
> > > Add any other context about the problem here.
> > >
> > > —
> > > You are receiving this because you are subscribed to this thread.
> > > Reply to this email directly, view it on GitHub
> > > <#130>, or unsubscribe
> > > <
> >
https://github.com/notifications/unsubscribe-auth/ADLWOXU3DX3S2NP56GDPRMDRPUOGHANCNFSM4MYAPMPQ>
;
> >
> > > .
> > >
> >
> > —
> > You are receiving this because you authored the thread.
> > Reply to this email directly, view it on GitHub, or unsubscribe.
> >
> > —
> > You are receiving this because you commented.
> > Reply to this email directly, view it on GitHub
> > <#130 (comment)>, or
> > unsubscribe
> > <
https://github.com/notifications/unsubscribe-auth/ADLWOXTHAJHILH5XLYRCLI3RPWZGXANCNFSM4MYAPMPQ
>
> > .
> >
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub, or unsubscribe.
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Describe the bug
Hello there,
I encountered some problems when compiling and installing NCL under macOS 10.15. When I finished the compilation, I tried to read a GRIB2 file through NCL and encountered a "Segmentation fault: 11" error. I checked the relevant information and found that this error was caused by a pointer variable being directly passed into the function without allocating memory. I have no way to solve this problem, can you help me?
In addition, my GCC version is 9.3. Other dependencies all install the NCL recommended version.
Provide the following:
a=addfile("fnl_20190312_18_00.grib2","r")
fnl_20190312_18_00.grib2 from rda.ucar.edu
Computing environment
Additional context
Add any other context about the problem here.
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