batch script for generating parameter file from a diff file #765
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… new one based off of a diff xml file.
…rameters to be defined as the full vector
…to print statements and new file for parameters at barro colorado island panama.
…ates_paramfile.py.
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Description:
This set of changes add the scripting capability to generate a fates parameter file from a base file, using diff file. The diff file uses and XML format, and contains the list of PFTs to maintain from the original file, and the list of parameters that should be changed from the original file.
This new scripting makes use of already existing scripts modify_fates_paramfile.py and FatesPFTIndexSwapper.py to do most of the work.
The input here is the cdl file. The scripting has the same python dependencies as the existing python scripts it uses, but also now assumes that the netcdf command-line utilities ncdump and ncgen are available as system calls.
Fixes: #761
Fixes: #763
Expectation of Answer Changes:
Does not affect the FATES code, ancillary scripting only
Checklist:
Test Results:
I've tested the scripts and they generate expected output.