Issue #21 - Add support for WCOSS phase 3.5 #40

KateFriedman-NOAA · 2020-03-25T16:59:55Z

Issue #21 - add support for WCOSS phase 3.5

Added "--partition" flag to setup_expt*.py scripts. Partition flag not required and does not do anything on WCOSS-Cray or Hera, only does something when invoked on WCOSS-Dell with "3p5" as the partition value. If partition flag is not invoked on WCOSS-Dell then it defaults to phase 3.

To use on WCOSS-Dell: --partition 3p5

When the partition flag is used with a value of "3p5" it will set QUEUE to "dev2" and QUEUE_ARCH to "dev2_transfer". Then when setup_workflow scripts are run it will see that QUEUE is set to a phase 3.5 queue and use the phase 3.5 ppn=40 value for resource calculations instead of ppn=28 which is phase 3's value. Additional phase 3.5 queues that QUEUE can be set to prior to running setup_workflow*.py are "devonprod2" and "devmax2".

Also removed machine if-blocks in config.base and added different machine paths to setup_expt scripts which populate config.base variables.

Example for cycled mode:

./setup_expt.py --pslot testcyc --configdir /gpfs/dell2/emc/modeling/save/Kate.Friedman/git/global-workflow/port2wcoss3p5/parm/config --idate 2020010212 --edate 2020010218 --expdir /gpfs/dell2/emc/modeling/save/Kate.Friedman/expdir --comrot /gpfs/dell3/ptmp/Kate.Friedman/comrot --resdet 768 --resens 384 --nens 80 --gfs_cyc 4 --partition 3p5

Example for free-forecast mode:

./setup_expt_fcstonly.py --pslot testff --configdir /gpfs/dell2/emc/modeling/save/Kate.Friedman/git/global-workflow/port2wcoss3p5/parm/config --idate 2020010212 --edate 2020010218 --expdir /gpfs/dell2/emc/modeling/save/Kate.Friedman/expdir --comrot /gpfs/dell3/ptmp/Kate.Friedman/comrot --res 192 --gfs_cyc 4 --partition 3p5

- add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files

yangfanglin · 2020-03-25T19:06:41Z

parm/config/config.base.emc.dyn

-    export QUEUE_ARCH="dev_transfer"
-
-fi
+export ACCOUNT="@ACCOUNT@"


Kate, removing the references to specific machines in config.base is fine, but where will these parameters be defined, including account, queue and directory settings ? Do you have a script that defines these parameters for each machine and then call the python setup scripts ? No one can remember all the parameters for different platforms. I have been using a script, for example, /gpfs/dell6/emc/modeling/noscrub/emc.glopara/para_gfs/misc/rocoto_cycled_warm.sh, to set up my runs.

yangfanglin · 2020-03-25T19:12:02Z

ush/rocoto/setup_expt.py

+    partition = args.partition
+
+    # Set machine defaults
+    if machine is 'WCOSS_DELL_P3':


OK, I see now you have most of the parameters defined in the setup python script. It is fine. Still, users may have to edit these settings locally in their EXPRDIR because not all are using or can use the same disk allocation.

The defaults we had in config.base.emc.dyn before were moved into the setup_expt scripts so the final config.base generated will only include the defaults for the machine the user is on. Users will then need to update their config.base before running setup_workflow script, just as they had to before.

aerorahul · 2020-03-25T20:44:01Z

ush/rocoto/setup_expt_fcstonly.py

+      account = 'GFS-DEV'
+      queue = 'dev'
+      queue_arch = 'dev_transfer'
+      if partition is not None and partition in ['3p5']:


if partition is not None is not required here, because if it is None, the partition in ['3p5'] will evaluate to False.

Thanks, I'll remove that bit.

KateFriedman-NOAA · 2020-03-25T20:53:51Z

Committed removal of unneeded logic at f4ee509.

aerorahul · 2020-03-25T21:20:01Z

ush/rocoto/setup_expt.py

+    partition = args.partition
+
+    # Set machine defaults
+    if machine is 'WCOSS_DELL_P3':


@KateFriedman-NOAA
You should be using if machine == 'WCOSS_DELL_P3' and not if machine is 'WCOSS_DELL_P3'.
The is relational evaluates to True if the two variables point to the same object.
The == relational evaluates to True if the variables are equal.

Gotcha, thanks!

KateFriedman-NOAA · 2020-03-26T13:02:39Z

Committed syntax correction at b133700.

Squashed commit of the following: commit 0e0dc87 Merge: b133700 95a6343 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 10:54:44 2020 -0400 Merge pull request NOAA-EMC#42 from NOAA-EMC/hotfix/viewer Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer commit 95a6343 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 14:43:44 2020 +0000 Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer commit b133700 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 13:01:38 2020 +0000 Issue NOAA-EMC#21 - correct syntax for machine if-blocks in setup_expt scripts commit f4ee509 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 20:52:49 2020 +0000 Issue NOAA-EMC#21 - remove unneeded logic from partition check commit 4acc80f Merge: accb6f4 fb1c79f Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Wed Mar 25 15:22:51 2020 -0400 Merge pull request NOAA-EMC#40 from NOAA-EMC/port2wcoss3p5 Issue NOAA-EMC#21 - Add support for WCOSS phase 3.5 commit fb1c79f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 16:06:54 2020 +0000 Issue NOAA-EMC#21 - updated WCOSS phase 3.5 queues commit 08a5354 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 14:58:14 2020 +0000 Issue NOAA-EMC#21 - add phase 3.5 support - add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files commit accb6f4 Merge: 057b2a8 8b51b56 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 14:01:30 2020 -0400 Merge pull request NOAA-EMC#39 from NOAA-EMC/feature/verif-tag Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub commit 8b51b56 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 17:40:18 2020 +0000 Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub commit 057b2a8 Merge: 0377d20 622167d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 11 12:00:58 2020 -0400 Merge pull request NOAA-EMC#29 from NOAA-EMC/feature/manage_externals Issue NOAA-EMC#3 - Introduce manage_externals as replacement for checkout.sh commit 622167d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 18:20:31 2020 +0000 Issue NOAA-EMC#3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh commit e83b90d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 17:00:15 2020 +0000 Issue NOAA-EMC#3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already commit 8699b46 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:30:54 2020 +0000 Issue NOAA-EMC#3 - updated README with new manic version commit e602cd3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:27:57 2020 +0000 Issue NOAA-EMC#3 - updated link_fv3gfs.sh to adjust wafs links commit 830c73f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:21:45 2020 +0000 Issue NOAA-EMC#3 - update EMC_verif-global tag in Externals.cfg after sync with develop commit 40084e6 Merge: f662fff 0377d20 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:18:52 2020 +0000 Issue NOAA-EMC#3 - Merge branch 'develop' into feature/manage_externals commit 0377d20 Merge: 1b359db 2552467 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:43:16 2020 -0500 Merge pull request NOAA-EMC#28 from NOAA-EMC/feature/metplus2 Issue NOAA-EMC#8 - add switch for MET+ jobs commit 2552467 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:31:02 2020 +0000 Issue NOAA-EMC#8 - add switch for MET+ jobs commit 1b359db Merge: 0359d34 31bb7d3 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 10:19:36 2020 -0500 Merge pull request NOAA-EMC#26 from NOAA-EMC/feature/metplus Feature/metplus - refactored MET+ jobs to resolve timing issues commit 31bb7d3 Merge: eb73e52 0359d34 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed Feb 19 15:24:42 2020 +0000 Merge branch 'develop' into feature/metplus commit f662fff Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:57:05 2020 +0000 Issue NOAA-EMC#3 - Updated README with new manic tag v1.1.7 commit e3196a8 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 13 15:59:06 2020 -0500 Update README.md commit e46b175 Merge: 4bd0e20 0359d34 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 20:38:04 2020 +0000 Issue NOAA-EMC#3 - sync merge with develop branch commit 0359d34 Merge: 1d9a1f0 bd00cb9 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Thu Feb 13 09:53:59 2020 -0500 Merge pull request NOAA-EMC#19 from NOAA-EMC/feature/remove_theia Feature/remove theia commit eb73e52 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Feb 7 14:04:37 2020 +0000 Update EMC_verif-global checkout to verif_global_v1.5.0 commit bd00cb9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:41:05 2020 +0000 Issue NOAA-EMC#4 - bug fix in getic.sh for v15 commit 1c85197 Merge: 67dae40 1d9a1f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:27:18 2020 +0000 Issue # 4 - Sync merge branch 'develop' into feature/remove_theia commit 1d9a1f0 Merge: 3ed9267 bdbecaa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Feb 7 08:11:21 2020 -0500 Merge pull request NOAA-EMC#18 from lgannoaa/exception_handling Exception handling commit 4bd0e20 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 11:55:31 2020 -0500 Update README.md commit d9ea1ac Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 6 16:03:11 2020 +0000 Issue NOAA-EMC#3 - reduce hashes down to minimum 8 characters commit bdbecaa Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jan 29 15:15:52 2020 +0000 Display exception handling message for individual package with location of the log file commit b64fd5f Merge: cf00863 3ed9267 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:24:37 2020 +0000 Merge branch 'develop' into feature/manage_externals commit cf00863 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:23:14 2020 +0000 Issue NOAA-EMC#3 - remove copy of manage_externals under util and add README.md file commit c12e879 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Jan 27 19:38:19 2020 +0000 Implement exception handling in build_all script commit bfc7bb0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jan 27 19:06:17 2020 +0000 Issue NOAA-EMC#3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds. commit 4d5713d Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 15:51:28 2020 +0000 Testing github commit commit 786806f Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 15:04:16 2020 +0000 Missed file format updates in a few places in config.metp commit d0a3b53 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 14:30:29 2020 +0000 init commit for exception handling branch commit c11dfef Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 14:07:29 2020 +0000 Update EMC_verif-global tag to verif_global_v1.4.1 commit 0ea809c Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jan 23 13:29:56 2020 +0000 Update file format variable in config.metp of online archive files commit c0d7179 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:37:16 2020 +0000 Add updated env machine files for gfsmetp commit 82e6907 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:29:23 2020 +0000 Update config.resources for gfsmetp commit 72e8adf Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:19:31 2020 +0000 Update EMC_verif-global tag checkout to 1.4.0 commit 6872f79 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:14:25 2020 +0000 Add rocoto METplus job script commit 9c94156 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:09:13 2020 +0000 Changes to setup_workflow.py for gfsmetp metatask commit 3ed9267 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 14 19:32:36 2020 +0000 Issue NOAA-EMC#10 - mid-year update to bufr station list (develop) commit 1915aa9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 10 18:36:32 2020 +0000 Issue NOAA-EMC#8 - pulled in config.metp and modifications to two setup scripts commit 67dae40 Merge: f78eb1b 091f4ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:15:45 2020 +0000 Merge branch 'develop' into feature/remove_theia commit f78eb1b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:13:08 2020 +0000 Issue NOAA-EMC#4 - removed references to Theia and Theia scripts commit 091f4ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 19:37:45 2020 +0000 Issue NOAA-EMC#7 - missed update to gdas transfer file from GFSv15.2.5 updates commit 3fd4bcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 17 19:12:28 2019 +0000 GitHub Issue NOAA-EMC#2 - GFSv15.2.6 obsproc version update, earc bug fix, and tracker path update commit 5307952 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Dec 11 20:47:44 2019 +0000 HOTFIX - VLab Issue #72346 - fix to rocoto_viewer on Hera

Squashed commit of the following: commit 073e5f64eab5badbd8a30b2ea702ce27159186fe Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 16:44:14 2020 +0000 modified: arch.sh add external reference to VFRARCH. commit 53c818babc7c5e3dadc089823604b58bcb31bf0f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 16:30:04 2020 +0000 modified: arch.sh to clean old data under vrfyarch and touch remaining data to prevent them from being removed by the operation system commit 44dd4c28609d4e7c24cf87d5f69796ea8f7a6245 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Apr 9 12:00:15 2020 +0000 Issue #1: update selection of global_convinfo.txt and prepobs_errtable.global to be consistent with GFS v15.2.11 commit a8b655c0b543b1a3d94b7bb70130e58c2a747663 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 02:50:32 2020 +0000 modified: module_base.hera and module_base.wcoss_dell_p3 to point to esmf/8.0.1bs08 commit 4c1acf26cac49b9dd26ad404c6547cea1a969b7f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 02:18:43 2020 +0000 modified: checkout.sh to point to model tag GFS.v16.0.2, which includes following updates https://github.com/ufs-community/ufs-weather-model/pull/100 * in FV3: code changes to improve atm fcst->wrt data transfer and fix iau restart files * in NEMS: Code changes are added to reduce the atm->wav coupling time and to turn off flush for esmf print in MAIN_NEMS.F90 * When print_esmf is .true., set Verbosity = high and HierarchyProtocol = off in atm-wav nems.configure (print_esmf can be off in model_confgiure at run time). * update esmf lib to esmf801bs08. commit 41b68b5b7257a6f5a3ee1c88f3b8d3251b8097a9 Merge: 556614f5 ad9dd289 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Tue Apr 7 00:15:44 2020 -0400 Merge pull request #51 from ajhenrique/bugfix/gfsv16b_sbspost Wave component workflow updates commit ad9dd28990f6ee6727f6dec43d335545c979093e Merge: 3b135fe9 556614f5 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Mon Apr 6 00:01:32 2020 +0000 Merging changes in gfsv16b: pointing to junwang:ufs-weather-model:esmf8.0.1 commit 3b135fe9b6a2adfd337aa5c59188a3641ca68432 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Sun Apr 5 23:54:36 2020 +0000 Adding ROTDIR path for operationalnco envir commit 556614f596f1e3fdb0dca3affe320aaea3650b23 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Apr 4 00:40:20 2020 +0000 modified: sorc/checkout.sh to check out model branch checkout gfsv16_chsp which contains physics updates (czil, background diffusitivity and mixing length over stable boundary layer, and canopy heat storage) for reducing surface cold biases. modified: parm/config/config.fcst, tunn on canopy heat storage for slm=1. commit 83c546b74d1c8fae22535082dec8cc03d8477ad7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 18:55:08 2020 +0000 Adding back input file setting in global config.wave script. Changing print_esmf to .false. to supress verbosity in esmf library calls commit 551ae13fcaf35f86580707bba583bc3b825d796b Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:52:01 2020 +0000 Added RUN_ENVIR variable to wave j-jobs. Removed wavelog from wave scripts, now using only jlogfile commit 6c803647fb3c8c14e5da032b0f14add219d74cb5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:39:34 2020 +0000 Updated KEEPDATA block and added exit 0 to wave j-jobs commit 42e08a505263aee0c990417487e7a62d37405d80 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:34:38 2020 +0000 Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files commit ddb1b953789b4253d70db9bceb2e9a2d5b6fcc43 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:33:12 2020 +0000 Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files commit 6c272f9e0cb13da7481431c60fc5f4c494d8fb87 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:06:29 2020 +0000 Unified calls to EXECwave and EXECcode. Removed legacy ush/wave_* scripts. commit 6e1e023b2e2d547b3429bd66a724c735db542c74 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 13:26:18 2020 +0000 emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file. commit d5d3701eb32f3a9052d2bb9944bb2a402cd95018 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 13:25:54 2020 +0000 emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file. commit 84c8730053c930508bf4ca211b1440ce32f735a1 Merge: 8ef7dee8 49faf67f Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Apr 2 19:57:12 2020 +0000 Merge remote-tracking branch 'gfsv16b/feature/gfsv16b' into bugfix/gfsv16b_sbspost commit 8ef7dee8b60cf548b8c0fbe95a57d8a49845ac38 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Apr 2 19:54:07 2020 +0000 Adding idx file for subgrid grib2 files. Redirecting subgrid grib2 source to new native wave grid gnh_10m. Correcting bug on timing of second restart file stream on gdasfcst runs commit 4355153d85c4d9a553dc4838659005a791fe12d7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Apr 1 19:44:37 2020 +0000 adding hooks and parms for new wave model grids in several scripts. commit 49faf67fd401856923947972053395d351330ede Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Mon Mar 30 14:32:42 2020 +0000 GitHub Issue #1 updated AWIPS parm cards with DZDT commit 84c28812d8d681c486132bb02cb9478055ec88b1 Merge: 7470bfe4 0e0dc873 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 27 18:50:36 2020 +0000 Issue #1: Merge branch 'develop' at 0e0dc87 into feature/gfsv16b commit 7470bfe459fcb28751800b525d9387fbc486b8e3 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 27 18:34:52 2020 +0000 Issue #1: maintenance and consistency updates * modulefiles/module_base.wcoss_dell_p3 - change prod_envir from version 1.0.2 to 1.1.0 * scripts/exglobal_fcst_nemsfv3gfs.sh - add PREFIX_ATMINC for EnKF. PREFIX_ATMINC defaults to a blank string - no change in current behavior * ush/hpssarch_gen.sh - add ensemble mean sfcfXXX to enkf tarball commit 79b91dc2399609d806b99f0ed5271494d1bab6d0 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Mar 27 04:46:51 2020 +0000 Adding missing cd fv3gfs.fd back in checkout.sh commit 0e0dc873ceff26f9666fc40287ad2457171719c7 Merge: b133700a 95a63432 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 10:54:44 2020 -0400 Merge pull request #42 from NOAA-EMC/hotfix/viewer Issue #41 - Update PRODUTIL paths for WCOSS in viewer commit 95a63432f3fbdd8745d0617089485cdc332f57e7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 14:43:44 2020 +0000 Issue #41 - Update PRODUTIL paths for WCOSS in viewer commit b133700a4a65fe5334e5b5522a8c6f83bf0bbd0c Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 13:01:38 2020 +0000 Issue #21 - correct syntax for machine if-blocks in setup_expt scripts commit c3fbe7970c03aaad8e5b511b9d43931da9382fd3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Mar 26 12:05:46 2020 +0000 Adding new grids, changes to modulefiles for poiting to new esmf module commit f4ee5098988106037528650ba8a15922150b70af Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 20:52:49 2020 +0000 Issue #21 - remove unneeded logic from partition check commit 4acc80f6037a4d0fd43a64e9178e7aadbd6162f5 Merge: accb6f4b fb1c79f4 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Wed Mar 25 15:22:51 2020 -0400 Merge pull request #40 from NOAA-EMC/port2wcoss3p5 Issue #21 - Add support for WCOSS phase 3.5 commit fb1c79f4b7136e09c9d35d9d05303116036f58c9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 16:06:54 2020 +0000 Issue #21 - updated WCOSS phase 3.5 queues commit 08a535492952d863f860977f0ab0da4bc79bc931 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 14:58:14 2020 +0000 Issue #21 - add phase 3.5 support - add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files commit be21d3f2bc06ef8e7e31edce08756ee6aee36d31 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 24 20:10:07 2020 +0000 Poiting exec to new location of ww3 executables (HOMEgfs/exec). Adding new NH 1/6, SH 1/4 deg grids for testing commit c4cc28b08ca58007882e9823a68f26c2c5eaf92b Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Mar 24 17:22:55 2020 +0000 Fix wave config begin and end echos commit 20d79d274be862b7147f17cd7654f2c770ce7425 Merge: 3efe1c23 accb6f4b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 23 18:19:08 2020 +0000 Issue #1: Merge branch 'develop' accb6f4 into feature/gfsv16b commit accb6f4b919871221e8037d5f154b157d88d1102 Merge: 057b2a82 8b51b56f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 14:01:30 2020 -0400 Merge pull request #39 from NOAA-EMC/feature/verif-tag Issue #38 - update EMC_verif-global pointer from VLab to GitHub commit 8b51b56f84289d1c01863b61421b21eccd22939c Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 17:40:18 2020 +0000 Issue #38 - update EMC_verif-global pointer from VLab to GitHub commit 3efe1c23fbe906953f3df4e6e6b43a604505dcf1 Author: Fanglin Yang <Fanglin.Yang@noaa.gov> Date: Sun Mar 22 16:49:40 2020 +0000 update arch.sh to remove selected RESTART files commit 586d0994aab2348c1deea521b37183ddf0a8f2d7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 19 14:01:16 2020 +0000 Issue #1 - update EMC_verif-global to tag verif_global_v1.6.0 in Externals.cfg commit f412f2ca8071baa6bd91f641c1fd8102e9271bef Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 19 13:53:34 2020 +0000 Issue #1: update EMC_verif-global to tag verif_global_v1.6.0 commit 94abe6a1caca4724fbc580d58928a6cf74a65590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 18 19:02:09 2020 +0000 Fix syntax error in setup_workflow_fcstonly.py commit 06ff92be074bac2728055a62ce0fa263a4d13cf6 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:37 2020 +0000 modify job card for tests commit a2b76f1d402c8568612dc727ebf36b548748589d Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:04 2020 +0000 modify namsnd TIMSTN commit 81bc3fc4090c4fd3bdec070abd9c117d5a09491d Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:09:24 2020 +0000 modify collectives mpmd design commit 9cbf9be8ea2a959a6711c10838ba46347451b7d1 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:08:41 2020 +0000 modify config.resources for postsnd number of tasks commit e3945e03031db23dbb8681e3d1034cc07377ae2d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:38:07 2020 +0000 Issue #1: add logic to check WAVE_CDUMP prior to setting npe_fcst_gfs commit 6fdc6365fa13c77f01ae0cdb82e74bbbd149f914 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:35:14 2020 +0000 Issue #1: DA workflow updates for GFS v16 (does not change results) commit c728925aaf6f8c2aac170e6987ed34e28e411053 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Mar 15 17:16:56 2020 +0000 Changes to test IOSTYP=3 and correct restart lines on ww3_multi.inp for rexcluding WW3 restarts. commit 9bc784f708e09e9f5392c662cae2ed51cfb09011 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Mar 14 17:43:00 2020 +0000 Changes to allow GFS fcsr cycle to have WW3 restart specs different to GDAS fcst (eg, turn off or on for GFS) commit 91610f80cef8911ac6aaae2ded67a95b4ff1d061 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:25:36 2020 +0000 Issue #1: update Externals.cfg to GFS v16 components commit 7dcf23281cddb9aabc20c73ec077a9a52ded56b8 Merge: 55130516 057b2a82 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:21:33 2020 +0000 Issue #1: Merge branch 'develop' at 057b2a8 into feature/gfsv16b commit 057b2a82fa43f7bc36c3e757ca7d48fb86b9541c Merge: 0377d20f 622167d5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 11 12:00:58 2020 -0400 Merge pull request #29 from NOAA-EMC/feature/manage_externals Issue #3 - Introduce manage_externals as replacement for checkout.sh commit 50649e274d2b074f4d3c6f18503b8bb6997a5bde Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Mar 11 03:16:10 2020 +0000 General cleanup for reducing size of wavepostsbs RUNDIR and improve runtime. Reorganized parameters in postsbs to provide more clarity and upfront control and the config.wave level commit 55130516cea5ea67b758b52c9445aca667e1c35a Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 9 13:59:44 2020 +0000 Add ability to have wave jobs depending on cdump commit 622167d5fb3322921a1702639ebccb42da1f5e1b Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 18:20:31 2020 +0000 Issue #3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh commit e83b90d50999f64ed5208d94a8cceb8179c9395f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 17:00:15 2020 +0000 Issue #3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already commit 8699b46aa1797e8dd29edff1d4bd3b511ad5cb1c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:30:54 2020 +0000 Issue #3 - updated README with new manic version commit e602cd3d536b55b86b04285aedd5781d8d3a9f82 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:27:57 2020 +0000 Issue #3 - updated link_fv3gfs.sh to adjust wafs links commit 830c73f430d70cc516dea419a8969c6fd9fc0910 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:21:45 2020 +0000 Issue #3 - update EMC_verif-global tag in Externals.cfg after sync with develop commit 40084e67810d21366d0e9af6d9937c29aa4965ad Merge: f662fffa 0377d20f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:18:52 2020 +0000 Issue #3 - Merge branch 'develop' into feature/manage_externals commit cfa5be4b414f67efa8eb17c8fe5060fe94cd48ea Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 14:05:29 2020 +0000 Issue #1 - remove gfswave restart archival commit 85b3a1d24e89c60e9977ecc549656a0145caeb8b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:51:22 2020 +0000 Issue #1: update postsnd section of config.resources commit 6c8dc92953e5c003882ffbb8376a8b1b2c8668d2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:40:38 2020 +0000 Issue #1: update config files to be consistent with settings in pre-implementation GFS v16 real-time and retrospective parallels * parm/config/config.anal - reduce second outer loop iteration count for gfs * parm/config/config.epos - add ENKF_SPREAD to toggle on/YES or off/NO generation of ensemble spread files * parm/config/config.fcst - set adjust_dry_mass for GDAS (true) and GFS (false) * parm/config/config.fv3 - remove nth_efcs, set C384 nth_fv3=1 * parm/config/config.resources - set nth_efcs to nth_fv3 (default 2) commit a107109d8fdd0292a3017f26e56863fbb28a63ce Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 16:08:23 2020 +0000 Fixed bug in config.fcst related to extra then commit 0de559a088ac670f2b105168988c18ee1b57488a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:55:50 2020 +0000 Issue #1: update exglobal_fcst_nemsfv3gfs.sh and checkout.sh * scripts/exglobal_fcst_nemsfv3gfs.sh - turn on adjust_dry_mass with dry_mass=98320.0, turn off iau_drymassfixer * sorc/checkout.sh - update to model tag GFS.v16.0.1 commit ce23e52730a9f6fe20215cb47563dd6f2dcb254a Merge: fa7bca5a 0377d20f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:36:50 2020 +0000 Issue #1: Merge branch 'develop' at 0377d20 into feature/gfsv16b commit 0377d20f3d019f77a47fc9860d6146fd3c8e5d94 Merge: 1b359dbe 25524675 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:43:16 2020 -0500 Merge pull request #28 from NOAA-EMC/feature/metplus2 Issue #8 - add switch for MET+ jobs commit 25524675a63e59829655bbd9a09abc4dca246357 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:31:02 2020 +0000 Issue #8 - add switch for MET+ jobs commit fa7bca5a5fb26886219190e9e5e5d6efb9f9ddab Merge: af73a39f cd67f975 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:08:57 2020 -0500 Merge pull request #25 from NOAA-EMC/feature/wave2global Feature/wave2global into feature/gfsv16b commit cd67f97592227fea0238327dade887d4584300c3 Merge: c72d7b5b af73a39f Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:03:10 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit c72d7b5bca4a67e83916edd17fb0e5c4612a7867 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Mar 4 23:53:41 2020 -0500 Clean up exwave_post_sbs commit 2e738f20930dfd7d5216920ec7cc26774be811f3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Mar 5 04:03:44 2020 +0000 Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh. commit b7638436b1e737077fbb2dad705e7ed157df261e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 21:02:04 2020 +0000 Fix to JWAVE_PREP to look back a day for rtofs commit 33cf0fc0f2a5d3b3ca749c9941835398f94e7606 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 19:59:56 2020 +0000 Adjustments after going through PR review commit 1b359dbeb31b94382619dfc9c67e77fffe46aaa0 Merge: 0359d342 31bb7d32 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 10:19:36 2020 -0500 Merge pull request #26 from NOAA-EMC/feature/metplus Feature/metplus - refactored MET+ jobs to resolve timing issues commit 5c8fa3dd2666b7fd90b473fb12629016ef402e3e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 13:03:12 2020 +0000 Adjust restart_interval if-blocks for DOIAU=YES in configs commit 2b337a8f8c900146905915032826faf9e6f07dc0 Merge: a4daafee e0a1a0ae Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:31:09 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit a4daafeecaf3fed38e637389ab5f4041b5139a4c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:30:58 2020 +0000 Adjustment to waveprep resources to match numbger of rtofs files, bugfix on generation of ascii spectral data commit af73a39fc8ae7868ea9d08081b98f84345fa4f95 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Mar 3 13:44:59 2020 +0000 Github Issue #1 Updated postsnd.sh commit e0a1a0aeb4066ab834fd93a86780196f55a7a447 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 18:45:50 2020 +0000 Fix gdasfcst dep on gldas commit 817f8faa6b0c71ef970da302d6e46b57c9ea8129 Merge: 48ed4c5f 203d1747 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 13:41:13 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 48ed4c5f4a6b0093941a97d475abdb6bed2937e5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Mar 2 04:22:02 2020 +0000 General cleanup. wavepostsbs wall time limit matches gfsfcst walltime . commit 4af83a430a8bb58f83d686535d39d9745de9ab6c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Mar 1 02:51:02 2020 +0000 Cleaning up prior to merging to gfsv16b commit 14f52dd35b7d6a1a9b98cff0da2426015cfabd3d Merge: 4400d7c3 d39ba74d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:17 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 4400d7c3e5e26bacc0ba892ef3178d4d906d57a8 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:13 2020 +0000 Changes to feal with waveprep and wavepost commit 203d174798aae0d4e581930fa8f49abb8421f81f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Feb 29 01:17:57 2020 +0000 Issue #1: two GFS v16 DA updates * sorc/checkout.sh - check out ProdGSI tag gfsda.v16.0.0 * parm/config/config.anal - remove REALTIME=NO section since not needed commit d39ba74d71b5bd5c510eb32cac17facdbe5a9a49 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 19:01:02 2020 +0000 Removed extra forward slashes in wave part of hpssarch_gen.sh commit 82889365da44196804b7d751a1c8c5992ca102ea Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 18:44:13 2020 +0000 Added waves to archival commit a8f4200d04d7c49a1ff1cd443f1f36fd949cb5db Merge: 9321bdc9 8997f2a2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:58:28 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 9321bdc9a5a85a4b458b3539bb4f15bdcbf2cf33 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:39:34 2020 +0000 Cleanup and added adjustments to other env files commit 8997f2a27a45ee018d33abdf1883914a38c88ffd Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 27 14:37:24 2020 +0000 Issue #1: check existence of EnKF spread file before adding to HPSS archive list commit 2d6620e9b961f290daab1369778644c799bec5cc Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:45:39 2020 +0000 rm nemsio utility commit 0120cf577df7faf2413e0b585423728ecd62657d Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:40:45 2020 +0000 modify config.resources for postsnd ppn=4 commit 0891840f8f43dccdd81573f2d6513b573de921aa Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:32:07 2020 +0000 modify config.resources for postsnd ppn=4 commit 67e20de5ac6e8f52312bc71adc5419330ebe6542 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 04:22:36 2020 +0000 Adding current smoothing flag to config.wave. Previous push alos contained changes to reflect improved wave model physics. commit 10164bdae0fdc53a604dc8e58b2a6a5fce5ebc99 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 03:47:36 2020 +0000 Adjustments to use gfs/gdas seaice file instead of omb file. Changes to intake rtofs 1hr files when available. commit 7145fd01ffcf3043dd1dea458ae866f208f32633 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 19:34:24 2020 +0000 Modify prep.sh to create rtofs symlink in ROTDIR if DO_WAVE=YES commit 5ac8c8683b6f3de8cc586bae8d3825b2bd67011c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 18:44:45 2020 +0000 Fix for missing nth_postsnd in config.resources commit 91456a9b7cfc285b78ec083a419592fafe6f75d0 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 15:52:32 2020 +0000 modified config.resources for bufrsnd commit 011a393c162a422859b1184e9f32dd50d1d48882 Merge: d01c3543 8806c9e4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 26 13:50:49 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit d01c3543e59bbabb491454788f17e818305de6fc Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:48:26 2020 +0000 Updates to checkout.sh from feature/gfsv16b commit 8806c9e4e3572169146a2ba3605a86680e35287c Merge: e87695c8 318d8b46 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 13:45:13 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b Commit NetCDF parallel reading capability. commit 3b5d451aa165dc368c674cd2a71d6786097869e7 Merge: 88d8abda 318d8b46 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:43:52 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit e87695c8b151e3c64cafed97ad921849d3998ece Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 13:42:41 2020 +0000 reinstate nemsio utility files for namsio data format commit 318d8b46ff7269899db92ae72f68fa1110406a16 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Feb 25 20:17:40 2020 +0000 Issue #1: add gldas and esfc to the list of log files to write to HPSS commit 6102b6971fc9ee1f5dfc20c98a625b20e7f2cbbc Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:32:21 2020 +0000 Adding a parallel reading interface commit c0b9ddc5dfe0d5dfcf1592fabf295ad951cc20b3 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:31:19 2020 +0000 adding parallel reading interface commit 057b10cc02f66cdede531a04967a2d6a51efb148 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:30:16 2020 +0000 Clean up un-used variable commit 25ac8f0a64ea710e7b8dd55dd3d03cdfd600c671 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:28:59 2020 +0000 Modify to call parallel reading subroutine commit c1a25a5ec5d46d52cd931b5178abba45bfb41345 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:20:26 2020 +0000 parallelizing gfsbufr.f for reading NetCDF files commit b28020f0c03ce54db3022de43ecc0f7119bce6d2 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:17:32 2020 +0000 modify driver for parallel read test commit bce7d9642decf393e2b314e837f557765a6382b8 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:14:45 2020 +0000 modify postsnd resource for parallel read commit f89912416cf5347fbcd6e1378aae61e99ffa14ac Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 18:59:26 2020 +0000 remove testing jobs script JGFS_POSTSND_netcdf commit 88d8abda4adf3c945b1c5526dfca6b1774b91f3b Merge: 33c65a19 9d6e8464 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 25 17:49:29 2020 +0000 Sync merge with feature/gfsv16b commit 9d6e8464aa207da41901278c9e5454efd9e475a2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 25 04:45:44 2020 +0000 setup_workflow_fcstonly.py failed. Updated to get "reservation" from config.base. commit 36367563af24402db621179bda139f17d3ca1d44 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 24 20:37:27 2020 +0000 Issue #1: update config files for use in GFS v16 real-time and retrospective parallels commit 33c65a19cbe68342cd9ab3f434a22a399be3a1b4 Merge: 9a1f79d7 0aa8dacf Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Feb 24 15:37:48 2020 +0000 Bugfix for creating spectra files in wavepostsbs step commit 0aa8dacfeef3fd1bf3abe368c9cdaf9a16b57cde Merge: 8148766c 431c7866 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:57:55 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 8148766c489057553e20fc42bad494f1ed5aa70c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:56:56 2020 +0000 Small fix to exglobal_fcst_nemsfv3gfs.sh commit 431c78668c98268cb749397ec8218428104c9687 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 20 15:19:42 2020 +0000 Issue #1: remove RESERVATION from archive jobs commit ebf02b19f98f90ae3c8bc57cc5c2325260aaab0a Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 20 14:05:52 2020 +0000 Remove output_1st_tstep_rst override and add iau_drymassfixer commit 36cb42dc5d8985f8402405dce811f04063f572ab Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:30:28 2020 +0000 Removing references to gens/gefs from exglobal_fcst_fcst_nemsfv3gfs.sh in preparation for merge back to gfsv16b commit 9a1f79d7aa0343ea95d1af419f55a2d0d356e99d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:19:11 2020 +0000 Adding back lost and found EOF in section that creates input.nml commit 635d95d58c932909dc6a29c62515c385dc01587a Merge: f31de5aa c4454b3a Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:42:49 2020 +0000 Additional sync merge with feature/gfsv16b today commit f31de5aaa6c915ac8bc1184726bead71dc9157d4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:18:23 2020 +0000 Removing copies of exglobal_fcst that were added erroneously commit c4454b3ab2c5fbda7890546f31f2fe38daa5edd9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 19 16:41:38 2020 +0000 modified: sorc/checkout.sh to check out model tag GFS.v16.0.0, which contains updates of dry mass fixer, WW3 thread reproducibility and post/8.0.5 lib modified: scripts/exglobal_fcst_nemsfv3gfs.sh to add iau_drymassfixer = .true. commit 31bb7d32181ca84229c3c3374226bbd37784ddc4 Merge: eb73e520 0359d342 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed Feb 19 15:24:42 2020 +0000 Merge branch 'develop' into feature/metplus commit e058a9054d7edb2b92ee590b6dede733fe4bc4a3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 15:05:59 2020 +0000 Changes to config.resources after wave tests commit 24844e403745fb5b292fcde0aae53a3c497aa295 Merge: 0f2f2b0b c2e99795 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 14:03:58 2020 +0000 Sync merge with feature/gfsv16b commit 0f2f2b0be1ff97485a23cdaf214d428927290c3d Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 13:36:14 2020 +0000 Updates to config.wave and scripts/exwave_post_sbs.sh commit c2e997959144b2628185b58e5480f25a7cd8852a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Feb 19 00:42:49 2020 +0000 Issue #1: add backup option to fit2obs, update config files * jobs/rocoto/vrfy.sh - set verification date based on VBACKUP_FITS * parm/config/config.anal - correct ozinfo typo, enclose realtime settings in REALTIME block * parm/config/config.resources - set npe_node_post for WCOSS_DELL_P3, reduce C768 eobs npe_eobs * parm/config/config.vrfy - add VBACKUP_FITS commit ed160c03ff53e10aa0e3d57ac802e8e6fecd54a3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 22:22:10 2020 +0000 modified: sorc/checkout.sh to check out gldas release branch gldas_gfsv16_release.v1.0.0 commit c08ebb8a2aca1061272c05643160aebc2a06eac5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 17:22:01 2020 +0000 modified: checkout.sh to use UPP: upp_gfsv16_release.v1.0.5 ufs-util: release/ops-gfsv16 commit a6bc7f8ad50a0c7400c17c3d1423e2aefccff2ed Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 17:12:17 2020 +0000 modified: arch.sh to archive gfs_pgrb2b group into HPSS commit 958ee38b6fb9c76056a3045f43dec92a503f48c9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 20:38:53 2020 +0000 Increasing resources for eupd when C384 commit db5c593f2c34111a13bddaa1f4f59edcd74c2118 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Feb 14 20:12:00 2020 +0000 Issue #1: update modulefiles/module_base.hera to crtm/2.3.0 commit f662fffa25a99617828e4322bf789978cf523248 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:57:05 2020 +0000 Issue #3 - Updated README with new manic tag v1.1.7 commit 94cd971fb14c4b7204822ca780d6e9dbe945b595 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:31:32 2020 +0000 Updates to wave scripts commit 4e006dc33fb68febaa33524dfafaa1f0d3282939 Merge: fcc5a74a a94a44a8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 14 00:50:00 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit fcc5a74a95d37ef2d7193ec6c0c8e5513a0f3548 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 14 00:48:44 2020 +0000 modified: config.fcst to fix a bug commit e3196a84a0ecd2b54d59abfdc9184622a9c605ca Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 13 15:59:06 2020 -0500 Update README.md commit e46b175d8a309010e421ccd54e6d6eb083af3579 Merge: 4bd0e203 0359d342 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 20:38:04 2020 +0000 Issue #3 - sync merge with develop branch commit aec4c288e1f96ee7f3f2a834014edde0ef4ea9a2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 19:09:56 2020 +0000 Added EUPD_CYC variable to config.base.emc.dyn commit a94a44a82be752f6542b50c8d6ce082f7272dc4c Merge: 0f0894bf 0359d342 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 13 18:59:51 2020 +0000 Issue #1: Merge branch 'develop' at 0359d34 into feature/gfsv16b commit 0359d3425a8710e7b696b94456ec8e54e9a2fd9f Merge: 1d9a1f00 bd00cb98 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Thu Feb 13 09:53:59 2020 -0500 Merge pull request #19 from NOAA-EMC/feature/remove_theia Feature/remove theia commit 0f0894bfcc8a25ea921026d911a38e7b726ce638 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Thu Feb 13 14:15:16 2020 +0000 GitHub Issue #1 removed script exnawips.sh.ecf (not used) commit adabbaf95b32b7292cc0f09447f98773795f2b1e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:34:02 2020 +0000 change netcdf modules commit 767b9c33e29aff3470d914edb9289ef8236331ed Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:32:25 2020 +0000 remove hardwired libs commit be3c324dc1e35f336b1df6f2be8ab335f45f1b9e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:31:13 2020 +0000 Modified modules for parallel_netcdf commit 3e3c119d096f5d03082183655d0f5db4e4991951 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:29:53 2020 +0000 Added netcdf_parallel modules commit 0b25f5b648892a068ac6ae1c30890729576b2c5c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 12 20:28:27 2020 +0000 Changes to be committed: deleted: ../driver/product/driver_WAFS.README deleted: ../scripts/exgfs_grib_wafs.sh.ecf deleted: mkwfsgbl.sh commit 2a2a8d3fe1fcd0bebf07d34c32697f64f5ac745c Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 18:00:14 2020 +0000 Adjusting config.resources for C384 commit 8bdf2387b1fad22cfa2da37a7428406a847d2362 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 17:33:53 2020 +0000 Reducing npe_eobs from 400 to 100 commit 648479c086776b0c7b4d24b4052130d48dfaa64a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Feb 12 15:56:39 2020 +0000 Issue #1: add reservation keyword to rocoto workflow generator for WCOSS_DELL_P3 commit c48ac6df8c5c166a1ef51b173372f3f26f9d877a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 14:46:26 2020 +0000 Removing gefs from checkout.sh and link_fv3gfs.sh commit fc0b624223baa54315e7ad52f48b689fff29bccb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 12 02:37:36 2020 +0000 modified: exglobal_fcst_nemsfv3gfs.sh -- bug fix commit 97e34f9728ae3bda52fe636994c91453b5cccfb4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 17:47:34 2020 +0000 removed the following obsolete lines from exglobal_fcst_nemsfv3gfs.sh JCAP_STP=${JCAP_STP:-$JCAP_CASE} LONB_STP=${LONB_STP:-$LONB_CASE} LATB_STP=${LATB_STP:-$LATB_CASE} commit 60098fc7238b35f461ec9aa8fabd924fb09372ce Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 17:34:40 2020 +0000 1. modified: parm/config/config.fcst to set lheatstrg=".false." for both NOAH-LSM and NOAH-MP per the decision made by the physics group. More development is required to use the canopy heat storage parameterization. 2. modified: scripts/exglobal_fcst_nemsfv3gfs.sh to 1) change the default of lheatstrg to ".false." 2) for ensemble forecast, change &nam_stochy ntrunc = $JCAP_STP lon_s = $LONB_STP lat_s = $LATB_STP EOF to &nam_stochy / EOF Phil Pegion noted: "If you are concerned about the ensemble runtime with stochastic physics on, I recommend removing ntrunc, lat_s, and lon_s from the namelist. I have fixed the bug that forced the spectral resolution of the random patterns to be related to the number of mpi tasks. Now the code calculates the appropriate truncation for a given length scale. It probably won't save a lot of time, but it is worth it. Scientifically, the patterns are the same. commit ababd08e676f45524ec616e60a0290c26d3b1795 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Feb 11 16:28:12 2020 +0000 Updated data card grib2_awpgfs102.003 commit eef10607bedf12153580d85d5a7952ea90c8b198 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 16:14:29 2020 +0000 resort back to older w3emc lib since w3emc_para does not support mersenne_twister modified: modulefiles/gfs_bufr.hera modified: modulefiles/gfs_bufr.wcoss_dell_p3 commit 8fe97ac689aebb2243b6e69cbf7015e636d68852 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 15:45:33 2020 +0000 modified: modulefiles/gfs_bufr.hera and modulefiles/gfs_bufr.wcoss_dell_p3 to load paralel netcdf modules commit 78a7294eb1937758fa81f72cc5045d3d680a07c6 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:29:15 2020 +0000 Fixed missing fi in checkout.sh commit 15628bda0621187949204d0d9af4d901e205495d Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:21:39 2020 +0000 Change fv3gfs checkout to develop branch of ufs-weather-model commit 631820beca07522faedccc47d7415c4b6b250273 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:08:30 2020 +0000 Changing checkout.sh to Henrique's fork branch gfsv16_wave commit cc742b672af73931999bddf115bc32f07ed69f87 Merge: ba63c4f8 1d9a1f00 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 10 17:19:58 2020 +0000 Issue #1: Merge branch 'develop' at commit:1d9a1f0 into feature/gfsv16b commit a518485866536102312c477926ae42a59d5e561e Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 17:02:22 2020 +0000 Changing fv3gfs.fd checkout back to gfsv16_updates commit c75d35b6802592b17640fecace38d9103a14b1bc Merge: 2a46ee2e ba63c4f8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 16:44:53 2020 +0000 Sync merge with feature/gfsv16b commit 2a46ee2ee71da5c75d11cbc96b048a1e34148239 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 15:42:35 2020 +0000 Updates for wave and fcst scripts, as well as config.wave commit ba63c4f83955bfc38bc3f2fbd9f8c6447630a803 Merge: fc2144e6 75a9fb5d Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Sat Feb 8 20:35:14 2020 -0500 Merge pull request #17 from NOAA-EMC/feature/gfsv16b_paranetcdf Feature/gfsv16b paranetcdf commit 75a9fb5d4dd6d4ef91bdee93769031465ddd57e9 Merge: a2932c5b 6f256b4f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 9 01:22:29 2020 +0000 Merge branch 'feature/gfsv16b_paranetcdf' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_paranetcdf commit a2932c5be934fb45416c92caa01f0fa3df4829d1 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 9 01:21:52 2020 +0000 modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.nco.static commit 6f256b4f7aadb9913cd78962e19dcabcf7ba49e4 Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov> Date: Fri Feb 7 20:07:24 2020 +0000 Added namelist option 'cld_amt' to enkf_chgres_recenter_ncio. Default is .false., when .true. will attempt to read in cld_amt and print error (but continue) if it is missing from input file commit eb0681751af6b850e99c880c11343af10000d54d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 7 16:20:43 2020 +0000 modified: sorc/checkout.sh update ufs_util repo commit b9feca17a5e566d75995049ba8e1497eb205b96d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 7 15:03:52 2020 +0000 modified: ../../modulefiles/module_base.hera modified: config.anal control ABI and AHI data usage modified: config.resources updates based on pull reviews modified: ../../sorc/gaussian_sfcanl.fd/makefile.sh use parallel netcdf commit eb73e520716215c3f11cc4cdfce3831408221766 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Feb 7 14:04:37 2020 +0000 Update EMC_verif-global checkout to verif_global_v1.5.0 commit bd00cb9812c5fb400ba4399d183b2198b8e80372 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:41:05 2020 +0000 Issue #4 - bug fix in getic.sh for v15 commit 1c85197d7a1beb34f2e3a52969d631d42003e6eb Merge: 67dae409 1d9a1f00 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:27:18 2020 +0000 Issue # 4 - Sync merge branch 'develop' into feature/remove_theia commit 1d9a1f00b73cb3852d352e9a41a15651a99fb656 Merge: 3ed9267b bdbecaa7 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Feb 7 08:11:21 2020 -0500 Merge pull request #18 from lgannoaa/exception_handling Exception handling commit 85deaf78b86184f9b52afe5d68b370ba640c152b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 19:16:18 2020 +0000 Updated resource configs based on C384 and C768 tests commit 4bd0e20300cc2a79e79433b2ec8cdb15c8f01c9e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 11:55:31 2020 -0500 Update README.md commit d9ea1acab54f65a987b32d56587dfd1b6bcd037c Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 6 16:03:11 2020 +0000 Issue #3 - reduce hashes down to minimum 8 characters commit 92d07793ce4be5ac1e12aedb536ace89ec6fcc7b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 15:28:15 2020 +0000 Update to use parallel netcdf libs modified: modulefiles/fv3gfs/enkf_chgres_recenter.wcoss_dell_p3 modified: modulefiles/fv3gfs/enkf_chgres_recenter_nc.hera modified: modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss_dell_p3 modified: modulefiles/fv3gfs/gaussian_sfcanl.hera modified: modulefiles/fv3gfs/gaussian_sfcanl.wcoss_dell_p3 commit a6a28943d08089d96dcf3ea7953ffaf9877e3caa Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 15:10:40 2020 +0000 Point new UPP tag upp_gfsv16_release.v1.0.2, for upgrading with netcdf_parallel 4.7.4, hdf_parallel 1.10.6 and w3emc_para 2.4.0 on Dell and Hera commit cf1c0a5cfec92cebaf648a09f42da435750154b6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 6 13:43:17 2020 +0000 Issue #16: Update EMC_verif-global to tag verif_global_v1.5.0 commit 41ca86bc4001549b98d6b6594288c9752215a1f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 04:19:11 2020 +0000 modified: parm/config/config.base.emc.dyn to point new obsproc_prep to spupport parallel netcdf commit 61b72ba02f920b4817ee199d9cae685e2e3c2234 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 01:10:06 2020 +0000 modified: config.resources commit 17bcdf2a1e0e8f1febfc6d57994a12ac625d9d75 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 4 19:11:42 2020 +0000 Wave changes for running with IAU on commit 3c0ebdde3307741f88e6ecef4f59faaf5efdd5ad Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 4 17:11:56 2020 +0000 modified: modulefiles/module_base.hera and modulefiles/module_base.wcoss_dell_p3 to point to parallel versions of netCDF libs and esmf lib modified: parm/config/config.efcs and parm/config/config.fcst to set chunksizes correctly for high-res and enkf forecasts commit f89bafe55aa0b15ae306dbaff8d97cbd17dc27c5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 3 14:09:33 2020 +0000 Issue #16: update DA checkout to feature/parallel_ncio commit bad2fc1a43a4df12f3f57c4da9e7612402885cd4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Feb 3 05:01:43 2020 +0000 modified: parm/config/config.fcst modified: parm/config/config.fv3 commit 183aac6be0ff71d8368ee139695aeca7caf72464 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Feb 3 04:10:36 2020 +0000 Modified config.resources to use npe_node_max to define computing resouces. Pull over new settings found in the config files of in v16rt2. Made ertain adjustment and cleaned up certain parameters in a few scripts to remove redundance. modified: parm/config/config.anal modified: parm/config/config.base.emc.dyn modified: parm/config/config.efcs modified: parm/config/config.eobs modified: parm/config/config.eupd modified: parm/config/config.fcst modified: parm/config/config.fv3 modified: parm/config/config.gldas modified: parm/config/config.post modified: parm/config/config.resources commit 9d5e0a0348ae7b825629bc4c601b8ee8e726418d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 2 19:04:59 2020 +0000 Github Issue #16 1. add options to workflow scripts to use parallel netcdf for I/O. The application varies with model resolution and computing platform. See config.fcst and exglobal_fcst_nemsfv3gfs.sh for the settings. 2. Update UPP to upp_gfsv16_release.v1.0.1 modified: modulefiles/module_base.hera modified: modulefiles/module_base.wcoss_dell_p3 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh modified: sorc/checkout.sh deleted: parm/config/config.resources.C96 commit 3a66788620477dd3159fe9633a860c799f421eee Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 2 05:17:40 2020 +0000 The following files are no longer used deleted: README.iau deleted: config.anal.iau deleted: config.base.emc.dyn.iau deleted: config.efcs.iau deleted: config.eobs.iau deleted: config.eupd.iau deleted: config.vrfy.iau commit fc2144e64bedc1f7fc7bd302e42baa94bfe06e7f Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:09:00 2020 +0000 issue #15 Remove station height adjustment commit 72cb96233fb636b83ca9f339e23955629c97b82d Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:08:20 2020 +0000 issue #15 Porting bufrsnd to Hera commit 0799ecd1922652d3d17e88dae62fea1c6d8a96e3 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:08:02 2020 +0000 issue #15 Porting bufrsnd to Hera and remove height adjustment commit a0ac43a8f1541ae47f156442a303689e5d74a9ec Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:07:34 2020 +0000 issue #15 Porting bufrsnd to Hera and remove height adjustment commit 85dc2f2486f841e7ad4785e5170c2edd2fbba35e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:04:28 2020 +0000 issue #15 Porting bufrsnd to Hera commit 26d52df758693bde55b047bfb874df4439c6d57a Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:03:20 2020 +0000 issue #15 Modofy driver for test runs commit 0e34bc5f4d38d742a11e3275ee560708c417c37f Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 14:53:37 2020 +0000 port v16b bufrsnf to Hera commit 87d3d18c291af5543de72e38e8dfe310223e1e1e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jan 31 03:53:20 2020 +0000 modified parm/config/config.resources to apply more tasks to gldas aprun_gaussian commit 50b70215096dbc87e0484ed0eea9572238c37432 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 30 14:55:48 2020 +0000 Resource adjustments and fix for restart copying in exglobal commit bdbecaa7220f2462cc75e802570845809ebcfc75 Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jan 29 15:15:52 2020 +0000 Display exception handling message for individual package with location of the log file commit 85b254d8e65318adaeef87ae7187218de59f94c5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 21:18:35 2020 +0000 Adjusting resources for wave component commit 3f858be34da7134a071762376f4c4e69ea73f4a0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:43:02 2020 +0000 Further adjustment to config.efcs for restart_interval for cold start SDATE commit a674d30c8fe1da53c2d8bda5b695a474e8906f6b Merge: 9944f2fe 3fda3e35 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:26:10 2020 +0000 Merge branch 'feature/wave2global' of https://github.com/NOAA-EMC/global-workflow into feature/wave2global commit 9944f2fe15576f0b401996fefe3c910888708e0d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:25:59 2020 +0000 Resource adjustments for C384, restart_interval adjustment for cold start, and fcst dependency update commit b64fd5ff43f88bd5f2d27b0a16fb803eac8aff8c Merge: cf008631 3ed9267b Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:24:37 2020 +0000 Merge branch 'develop' into feature/manage_externals commit cf0086311daaf62ee33df010946d0a0ddc5bc400 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:23:14 2020 +0000 Issue #3 - remove copy of manage_externals under util and add README.md file commit 3fda3e359f66611c77a97ca9c30a6204a36077c3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 14:18:47 2020 +0000 Adjusting output stride on station outputs, adding bulletin output to wavepostsbs using unified wave_outp_spec.sh (removing wave_outp_bull.sh), adjusting wave resources in config.fv3 commit e4bd7d09ef3cc06d14dbfcb07bd3f211d4a5e54c Merge: 99b19f18 b3d88593 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:58:16 2020 +0000 Sync merge with feature/gfsv16b commit 99b19f18e0a01fcf49b442ec66f1aea43b16433c Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:54:46 2020 +0000 Disabling additional wave jobs for later implementation commit c12e87987113fa6f4b543bc0dae61d4259703c03 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Jan 27 19:38:19 2020 +0000 Implement exception handling in build_all script commit bfc7bb0b237d4cf4240551aa8b9c5d025724ac16 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jan 27 19:06:17 2020 +0000 Issue #3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds. commit b3d885930adfc07c67bc8fbe146533868f96aba8 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jan 27 17:54:31 2020 +0000 Issue #1: update gldas workflow dependency to improve parallel throughput commit e216205aec6f481b4e96c8707d485dd2eacfb0e7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Jan 27 00:01:14 2020 +0000 Updating resource config in config.fv3 for running cplwav in c384 with ppn=7,thrd=4; checkout.sh now points to the latest ufs-weather-model develop branch; updated fv3gfs_build.cfg to match ufs-weather-model commit 4db98e694624b62e45417b3bb6c7c771f633cb42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jan 24 17:18:14 2020 +0000 Issue #1 - update EMC_verif-global checkout to tag verif_global_v1.4.1 commit 4d5713d3983c6cc6a8e497e892760752e09f15a0 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 15:51:28 2020 +0000 Testing github commit commit 786806f3cd5d858615f3f74dec78891a2189ee79 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 15:04:16 2020 +0000 Missed file format updates in a few places in config.metp commit 7d0f783a41d8f1c50e9251b54884410e0bb7ad1a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jan 24 14:41:02 2020 +0000 Issue #1 - GFS v16 updates for MOS, checkout, and archive * scripts/run_gfsmos_master.sh.dell - update MOS script to point at MDL gfsmos * sorc/checkout.sh - check out new fv3gfs branch and UPP tag * ush/hpssarch_gen.sh - add loginc to gdas and gfs tarballs commit d0a3b53c8117676c351c50287d4583951c94d42c Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 14:30:29 2020 +0000 init commit for exception handling branch commit c11dfef0f7fb8da2866e6a022ac0ff60044766a7 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 14:07:29 2020 +0000 Update EMC_verif-global tag to verif_global_v1.4.1 commit df2e6b0bd9a2af2107a78c12f9c648a61fe0d5b9 Merge: bc07de02 09e68b48 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 20:00:34 2020 +0000 Sync merge with feature/gfsv16b commit bc07de02af5743194cb9203d0d36e62e9a25b223 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 19:43:12 2020 +0000 Fixed wavepostsbs dependencies commit 4b54c37b425c947e79c4ddc192a6e2f06b8528fa Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 15:04:20 2020 +0000 Turn off cplwav in efcs config and adjusted dependencies for fcst job commit 0ea809c208ce606c957eed4d346a3828d8186010 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jan 23 13:29:56 2020 +0000 Update file format variable in config.metp of online archive files commit b886c848a60871a86bb0b45d024a34368ad1d898 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 22 21:01:34 2020 +0000 Change to base config and update to wave dependencies commit 154b118a7808bfa60abe0620e4bee21cb4faabee Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 22 03:37:24 2020 +0000 Changing WAV_MOD_ID to MDC (model component) tag; updating some paths for wave components in several scripts. Correcting wave_tar bug. commit 0edcb211586f1f96d01f172215568fa7eee3a7a2 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 21 20:15:14 2020 +0000 Several changes to change the sirectory name from to etc. Updates to wavepostsbs. commit c0d7179f34837e40db9ccb1b941ad9f312283a6e Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:37:16 2020 +0000 Add updated env machine files for gfsmetp commit 82e690717d72c7b021c637270108f4bacfb6816d Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:29:23 2020 +0000 Update config.resources for gfsmetp commit 72e8adf1c8a8859786cbbcf1b976640d73c5c867 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:19:31 2020 +0000 Update EMC_verif-global tag checkout to 1.4.0 commit 6872f79f3f9052377ff863da1bbac482548ee0ce Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:14:25 2020 +0000 Add rocoto METplus job script commit 9c94156670bd810561bd2a699648afb946511ea9 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:09:13 2020 +0000 Changes to setup_workflow.py for gfsmetp metatask commit 09e68b4834b0b54552ef0ae3829a41063200fe5f Merge: a49e4e54 3ed9267b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jan 20 22:05:53 2020 +0000 GitHub Issue #1 Merge branch 'develop' at revision 3ed9267 into feature/gfsv16b commit 0ad851882686087fdd21a4a8f88b65dd3960cd1c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 17 17:29:09 2020 +0000 ACCOUNT fix in config.base.emc.dyn and dependency fix to setup_workflow.py commit 80f13fb4b785fbde8e925cfb6deb547297f34e70 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:29:35 2020 +0000 Removing underscore from COM wave directory names commit 39a9df9385631df4a3cba4e6663fc6ab5c3f238d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:08:41 2020 +0000 Changing back waveprep to include ice and currents by default commit c36df4d748bbc2a8dc7b4a044a1f62f637e3ba33 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jan 16 19:43:26 2020 +0000 Updating post sbs script to copy station files to correct directory. commit a49e4e5403b1e16025b2a5890cef3de22627119a Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Thu Jan 16 14:59:08 2020 +0000 Added build script for gfs_util commit f1cd7ab43d24fc576c82ea227cd7d79cc08f4835 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:48:11 2020 +0000 Adding block sourcing config files into wave j-jobs commit b736f8315497bfc29fd77faa9d98bf558ddea919 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:40:16 2020 +0000 Removed config sourcing from rocoto job scripts commit 4f6840b25d85152ea7393a8959619bb4caab9d67 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:38:41 2020 +0000 Removing dependency on log file for wave post sbs commit 429c409799f1999babbfb3653e6f03be66f8fec3 Merge: 3f685fd3 a6905174 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:35:24 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 3f685fd3423add0ba2cfb7c3115a674891c44e55 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:29:58 2020 +0000 Reinstating Ratkos NO NO in build_fv3.sh commit 8f48844906f851a41db742f7686f7e7cae6b95c0 Merge: 5eeaffa1 7c595189 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:12:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit a69051742c5edd0e4d34d178329fc24cacede78a Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:12:20 2020 +0000 Adding supplemental config source to JGLOBAL_FORECAST for wave commit 5eeaffa1c3f4e35fe067b7e229f16f93574bcb86 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:12:08 2020 +0000 Updated GFS drivers commit 7c595189e8c671a7b2eb6363d82020fb9ed58c13 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:09:54 2020 +0000 Github Issue #1 updated JGFS_PGRB2_SPEC_GEMPAK commit 1f5c593705df384608b1f1dd84df9114d5d8a812 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:59:27 2020 +0000 Removing KEEPDATA from JWAVE_POST_SBS commit 5d2f2a21947dfb00762b1085fd267ca959b7fea6 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Wed Jan 15 19:50:00 2020 +0000 Github Issue #1 modified rocoto gempak.sh commit baa06afcecef64faad51bfac3b4fd2c064df3fb5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:32:06 2020 +0000 Changes to update sbs post and reconciling parameters for output post data. commit 8d430ceeac22bb8943bdf2052b85cccc9b621440 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 16:28:13 2020 +0000 GitHub Issue #1 Updated ush,gempak,jobs and docs commit 53f719f63f569bd061bd3cfd3b63d5040a962dea Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 14:19:46 2020 +0000 GitHub Issues #1 Bugzilla ticket 889 fixed bug in rdbfmsua.f commit 8b94a2d6caad3bc5eebfe69bffc5224bebd1856a Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 14:15:16 2020 +0000 GitHub Issues #1 Updated some gfs driver commit ed2317a953992974dc2e61517cfe3d22d3c2d75f Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 05:10:51 2020 +0000 Updated GFS driver commit 3ed9267b2f540694e957ee33a746f00857a5a1a2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 14 19:32:36 2020 +0000 Issue #10 - mid-year update to bufr station list (develop) commit f59fc0c4550a5e8617fb70ca150e91a65de89e18 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Mon Jan 13 20:03:34 2020 +0000 GitHub Issue#1 Revert parm card for AWIPS grid 211 commit 21feab285859881814509d75c794bc4ae4f74a3b Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 22:00:38 2020 +0000 GitHub Issue #1 Updated AWIPS grid 211 commit e292d96010dc1e63f28d2c9d95c5e61776abe0dd Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 21:12:36 2020 +0000 GitHub Issue Updated AWIPS parm card grid#211 commit fcf2d09159f80142364fad616661014e434b2a89 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:55:57 2020 +0000 modify gfs_bufr.sh for generalization commit 528cde1998fa6b341794f4ad15820e8cbc517568 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:55:05 2020 +0000 modify exgfs_postsnd.sh.ecf commit 0b5a056b7c089e428806ceecb36ae0ddd0535060 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:40:21 2020 +0000 Addd 25 bufr stations and all station j,i commit 349c299740b5e1d022faa2d17aa6aa05ed8d7165 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:36:57 2020 +0000 add module nemsio/…

Enable subsurface cycling (fhcyc) for regression tests using RUC LSM and other GSL physics

iinvalue input fix for added output need hera action

Merge to 2024 Jan 12 NOAA-EMC/develop and update to 2024 Jan 29 UFS

12Jan24 global-workflow UFS: 29Jan24, 625ac02 FV3: 29Jan24, bd38c56 (GSL: 28Feb24 , a439cc7) UPP: 07Nov23, 78f369b UFS_UTILS: 22Dev23, ce385ce update pointers for ufs_model and ufs_utils add GSL C3_MYNN xml suite Squashed commit of the following: commit db6a85e0ce36cec28714a4c9d6e13565253cf7bb Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Tue Mar 19 19:33:28 2024 +0000 29Jan ufs_model.fd, 29Jan FV3 with C3 files commit de7b382c4b259d99d39e8857cbcee7efe64c1956 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Mon Mar 18 16:23:05 2024 +0000 update pointer for atmos_cubed_sphere to Feb 1 hash commit 0fc27835205aaf57bdba228b1769e0ac7b37712e Merge: b2c8ef81 db06f7c5 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 14 00:17:24 2024 +0000 Merge branch 'gsl_ufs_dev' of https://github.com/NOAA-GSL/global-workflow into gsl_ufs_dev commit b2c8ef81229b5e9b8e7592cb12c2f3e8e3179d92 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Mar 13 23:51:45 2024 +0000 ccpp pointer updates to framework and physics commit 484a18df8c9022190c8900c80e40507a6771e314 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Mar 13 23:43:18 2024 +0000 ccpp pointer update in ufs_model.fd/FV3 commit db06f7c57d4cfc863352a4613c8260b0dffd9afe Merge: 579f90c1 2dbd12a6 Author: Janet Derrico <143837053+jderrico-noaa@users.noreply.github.com> Date: Wed Mar 13 15:55:48 2024 -0600 Merge pull request #43 from kayeekayee/gsl_ufs_dev update GSL C3_MYNN files and change dt_inner=75 commit 2dbd12a695c4349071ee8470e597540e71bc0292 Author: kayee.wong <kayee.wong@noaa.gov> Date: Wed Mar 13 03:48:51 2024 +0000 update GSL C3_MYNN files commit 579f90c1e0e2896710046c1885f68560ea435fa6 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 19:20:46 2024 +0000 update ufs_model.fd submodule pointer commit 2f2622d68eb8444afde9c1ddad470cfee1b63b99 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 19:15:23 2024 +0000 update ufs_model.fd submod pointer commit 706a0c52bb11af78e016014550ebd6847cc0ee19 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 19:12:35 2024 +0000 update ufs_model.fd/FV3 path commit 352f188f095e19442ade1f3fd167ff2fed501cd2 Merge: 5a8edc76 96545dcb Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 17:58:38 2024 +0000 update ufs model pointer commit 5a8edc766f2f4d3e12c692069d46c02fd766c354 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 17:42:00 2024 +0000 update FV3 and UPP commit 96545dcb63e3f8f7dfc036961d818db15fa1a003 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Mar 6 10:05:39 2024 -0700 update pointer for ufs_model.fd commit 25c026ef03a8d8c0db0b7368d2836f0b2e866eae Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Feb 29 20:35:11 2024 +0000 update ufs_model pointer commit a28617a951c46b765aa996bfe4d28b554ec4e0a4 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Feb 22 06:16:26 2024 +0000 removed unneeded gsl directories commit 6fb4f90e8572e98c977a1d2ab385f033111f3ea7 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Feb 22 06:08:13 2024 +0000 update ufs_utils.fd pointer commit 9264f0c09239d046c5cd862d807e9b82f51dc3bd Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Feb 21 19:33:26 2024 +0000 update .gitmodules file commit f8edfa966147506f2c207728039e3a736cb95415 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Feb 21 19:30:47 2024 +0000 update pointer to ufs_utils.fd commit 5e0d2ab02d58e6a7a40db55a149a93008b28aa8b Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Feb 21 19:25:52 2024 +0000 update pointer to ufs_model.fd commit ebc9e1d02987a1c6aa8cabedf2323642748fab3c Merge: e7a81511 50cb1e6f Author: Janet Derrico <143837053+jderrico-noaa@users.noreply.github.com> Date: Thu Feb 15 13:40:33 2024 -0700 Merge pull request #40 from kayeekayee/gsl_ufs_dev Merge to 2024 Jan 12 NOAA-EMC/develop and update to 2024 Jan 29 UFS commit 50cb1e6f0c661e4c6e2ef0be4527cce58379b2c9 Author: kayee.wong <kayee.wong@noaa.gov> Date: Thu Feb 15 20:30:34 2024 +0000 Add pygraf workflow. commit 38b726125d49cff6cae4c0e5fff2438fc33143c5 Author: kayee.wong <kayee.wong@noaa.gov> Date: Wed Feb 14 17:43:15 2024 +0000 Add double quote for the arguments when calling setup_expt.py. commit 053f2025fb0b0679c7d4f84958973c1534ec050c Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 23:57:06 2024 +0000 more fix. commit 6f80ea2edc5444e275a79b371d02b6e98e963662 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 23:50:01 2024 +0000 more bug fix. commit 56e283f1f666a38a4a3b30e1528e96eeb5c622e7 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 23:40:02 2024 +0000 Minor bug fix. commit 2dcfed06ff6789eb77cf92e22b80f5475923fafc Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 23:19:03 2024 +0000 Update parameter for c3 case Add c3 and mynn template commit cc46b19ccc7cdb54878340eff79dda9e747abdf7 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 20:51:23 2024 +0000 Update INFO. Add c3 SDF in the build. commit a444ed48a23f24724853036e522b4437bf412c59 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 18:42:33 2024 +0000 Update to UFS 2024 Jan 29 version. commit 88595707c7521cdce37ae1cf78720a7827242b24 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 18:16:46 2024 +0000 Minor bug fix. commit baa0e9f10b132098d5134efaad712a51ebc26b83 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 17:59:27 2024 +0000 Update parameters for setup_expt.py in p8_ugwpv1.sh to resdetatmos and comroot. commit 5875f06903f82a47fafb05f89f840e3b099d18d8 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 17:51:11 2024 +0000 Remove old gsl SDFs. Remove 'rrtmg_lw_pre' from C3 and MYNN SDFs. commit 9e0d1342f4e1edce96c9b2baeec55c2cffb964cd Author: kayee.wong <kayee.wong@noaa.gov> Date: Thu Feb 8 22:14:01 2024 +0000 Merge to 2024 Jan 12 NOAA-EMC/develop. Squashed commit of the following: commit c59047614c29f6ec15a4d4a6fa1855929287debd Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Fri Jan 12 19:21:02 2024 -0500 Update hash to ufs-weather-model. The noahmptable.tbl was reorganized, so update link_workflow.sh to use the same one used in UFSWM RT (#2219) commit c041968e165c07da785376f1441374687b55d6cc Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Jan 12 12:09:35 2024 -0500 Add ocean resolution to setup_expt invocation and retire/reduce COMROT/ROTDIR usage (#2214) Two series of updates: 1) Update setup scripts to now allow users to provide ocean resolution 2) Housekeeping to retire the `COMROT` variable, replacing it with other variables as needed, and reduce the `ROTDIR` variable usage. Both updates change options for the workflow setup API. Refs #2061 commit 997f97816493d9ed0242e169b6dcf84e5c9338d6 Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Fri Jan 12 10:46:36 2024 -0500 Allow use of ocean obs prep in WCDA cycling and remove R2D2 (#2215) Enables use of ocean obs prep task in WCDA cycling and removes R2D2 from same. Runs task gdasprepoceanobs before gdasocnanalprep -- obtains ocean data nc4 files from DMPDIR, processes them into IODA format and copies them to COM_OBS. Replaces the current R2D2 processing. commit 12a5bb192ab6282d44c008c06dc14947abd37249 Merge: 4cb58020 6492c2da Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Fri Jan 12 09:26:27 2024 -0500 Merge pull request #2217 from DavidHuber-NOAA/update/versions Update and clean up version and module files commit 6492c2da5f49bd31575d0bef5278c9a7f8ba3412 Author: David Huber <david.huber@noaa.gov> Date: Thu Jan 11 11:49:08 2024 -0600 Update orion module/version files for met/metplus #2123 commit 94c9937f0bff380b0ebd6acdcfd2509e1ae99389 Author: DavidHuber <david.huber@noaa.gov> Date: Thu Jan 11 17:42:53 2024 +0000 Comment met/metplus out from Hera modulefile. #2123 commit 8c32f8b7d00bba6e3e954f149e6548fb27713a3c Merge: a65e4c67 4cb58020 Author: David Huber <david.huber@noaa.gov> Date: Thu Jan 11 11:34:44 2024 -0600 Merge branch 'develop' of github.com:noaa-emc/global-workflow into develop commit a65e4c675f21dbe72198d263e85e894e62b41e13 Author: David Huber <david.huber@noaa.gov> Date: Thu Jan 11 11:34:19 2024 -0600 Initial update of version/module files #2123 commit 4cb580201af68c1c0e2ae19faf0727dcbbe43b4d Author: souopgui <souopgui@users.noreply.github.com> Date: Wed Jan 10 08:30:22 2024 -0600 Fix OpenMP over-allocation of resources in exglobal_atmos_products.sh when running MPMD tasks (#2212) Fix OpenMP over-allocation of resources running MPMD tasks Co-authored-by: Innocent Souopgui <isouopgui@redlineperf.com> commit b056b531faee6929687cb8a588ffafa1a66426fb Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Mon Jan 8 17:28:05 2024 -0500 Add Hercules as valid machine in CI scripts (#2207) Few updates to CI scripts to include names for hercules that where missed the first time. commit 6574d29a8c26b0695614874c344bccc5182363f4 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Mon Jan 8 17:25:47 2024 -0500 Fix invalid GH action and restart file name (#2210) Resolves a typo that leads to an invalid workflow yaml and fixes the restart filename in restart detection. Resolves #2205 commit 69605eac299df381ea9e0e329654487e26380ff5 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Mon Jan 8 17:00:28 2024 -0500 Stop attempting to comment link to RTD for non-PRs (#2209) Adds a check so comments with a link to documentation are only generated for PRs. commit 4e160a895bfb31c281e21557dd86c13954a1a967 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Mon Jan 8 13:10:15 2024 -0500 Enable UPP for GOES processing (#2203) Wnables the creation of special master grib2 files from UPP for GOES processing commit c15875b6dbf685327af9316ee43b3d01f0fc815e Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Mon Jan 8 09:56:06 2024 -0500 Port cycling to Hercules (#2196) Adds cycled support for Hercules (excluding gsi-monitor). Partially resolves #1588 GSI monitoring is disabled on Hercules due to missing Perl modules. That will be enabled in a later PR. commit ef6827dd6abdab2996d1e19f9e0ff5d3071e0fdd Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Mon Jan 8 09:43:12 2024 -0500 Refactor rocoto task XML creation (#2189) Refactors the rocoto task generation to be recursive. This will allow nested metatasks to loop over multiple variables, which is needed for GEFS product generation. As part of this refactor, there is no longer separate arguments to designate metatasks. Instead, task dicts can include a nested 'task_dict' as well as a 'var_dict' containing the variables to loop over. The nested task dict can then either have another layer, or be the innermost task. To accommodate the new recursive nature, some defaults that were previously defined in create_wf_task() had to be pushed down into the function that creates the innermost task. Also, former keywords have been absorbed by the task dict. Refs #823 Refs #827 commit 2b81cfac16f103fb29b3aeb9748941787abf7287 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Mon Jan 8 09:41:03 2024 -0500 Update fix versions (#2198) Updates fix versions for a few components: - Update cice and mom6 versions to support C96/1p00 marine - Update wave to change betamax setting for glo_025 waves Resolves #2004 Resolves #2107 commit e7a81511e37f86e881da020e06b95990b470d952 Merge: af47b77c 75ad3754 Author: Janet Derrico <143837053+jderrico-noaa@users.noreply.github.com> Date: Thu Feb 1 13:14:02 2024 -0700 Merge pull request #37 from jderrico-noaa/gsl_ufs_dev Add GSL archive script and correct typos/fixed paths commit 75ad3754f8bef5411c2570b5e392cd08e95cb6cb Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Feb 1 20:00:52 2024 +0000 adding consistent [[ ]] for if statements commit 67b99668c82a5fd8c42479b9b1bfe8b0bad0be25 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Feb 1 19:37:47 2024 +0000 Updated HOMEgfs in GSL XML templates commit 4d3719c086e7907a6eeff03112042d392e0d8c5e Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Feb 1 17:27:39 2024 +0000 Correct syntax errors in GSL scripts Add new GSL archive script for archiving grib2 and ICs, but no netcdf files commit 4309dd0b3b2d5625e7e1740d7cd3e39aacd5bc29 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Mon Jan 29 18:05:45 2024 +0000 Add GSL diag tables to parm/ufs/fv3 Update GSL template for hera Create EMC and GSL versions of files under workflow/rocoto - tasks.py, workflow_tasks.py commit af47b77c7ee59a11c798995b4362b57e9096b090 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 02:07:43 2024 +0000 Create GSL version of archive script commit 529d9f71f97b6e643e76a53bc9871901ae861faf Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 01:37:09 2024 +0000 Create GSL version of tracker.sh - this is a placeholder with changes from last year's HFIP experiment; will likely need to be updated in the future commit 8457e12c313bee602265b863129734354b019271 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 01:27:42 2024 +0000 Link config.base.emc.dyn_hera to config.base.emc.dyn commit 7a05f5bd947944d8c3be828aeef9cc03bf9e073a Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 01:22:54 2024 +0000 Create GSL version of hpssarch_gen.sh - assume we only run cold starts - archive only 0p25 grib2 files (no 0p50 opr 1p00) - assume no pgrb2b or flux files are created so no need to archive to HPSS commit 98f5d6b16437e2a340bf16f83187e389a53f8bf0 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 00:24:06 2024 +0000 Update workflow directory - add GSL template for jet (based on last year's experiment) - create EMC and GSL versions of yaml files under hosts; defaults point to GSL files commit 38a7e5629ceeb23d399643a021e9a0a88468a07c Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Jan 25 18:40:37 2024 +0000 Update atmos_products configuration file for GSL - set downset to 1 so pgrb2b files are not created - set FLXGF to "NO" so interpolated sflux.1p00 files are not created commit fe8a953658d092ce2b597e14f31678624606fd8a Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Jan 25 17:02:25 2024 +0000 Update nodes for gfsfcst task in GSL template for hera to match default configuration in config.ufs (12x12, 2 threads, 1 write group, 40 write tasks ==> 56 nodes) Increase walltime to 4:10 for gfsfcst task commit 9d85b0f6d50e8ed142557fcb87c89d2e5d63c617 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 23 19:08:52 2024 +0000 Added default location for PTMP/STMP in workflow/hosts/hera.yaml Added GSL XML template for hera commit 1cf317d327fae78c5469712c9e5a6aa1ffa4b23b Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Wed Jan 17 22:33:13 2024 +0000 Add sjet partition Make syntax consistent in "if" statements in config.resources commit 2755e203751f50113849b06769173285e093290b Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Wed Jan 17 22:32:26 2024 +0000 Update configuration files for GSL - create Hera and Jet versions of config.base.emc.dyn - correct typo in config.fcst - create different versions of config.ufs; default is 12x12, 2 threads, 1 write group/40 write tasks (56 nodes) commit 3c0c126a376af31866a93aef4cdd0b4145150c58 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 16 17:32:25 2024 +0000 Add script for remapping 1/4 degree grib2 grids to other domains commit f217d4ed9a500e9a1bdcc17548729d972a1763ac Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 16 16:46:25 2024 +0000 Update link script for ufs_utils.fd commit 5b21b31900955013b4e8106d3ae906b9da93b361 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 16 16:45:25 2024 +0000 Add GSL archive scripts for initial conditions commit abb88baf9dd536a3b2ea1e24eaa99cbfe85af799 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 16 16:42:17 2024 +0000 Move configuration files for getic and init from jobs/rocoto to parm/config/gfs commit 45b235180719ab79d2514f0317207fbebfb8aedd Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sun Jan 14 03:21:15 2024 +0000 Add suite definition file for v17p8_ugwpv1_c3 to sorc/ufs_model.fd_gsl commit 147b1fce99254dcb602c333cc559feaa9a396e81 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sun Jan 14 01:57:22 2024 +0000 Add getic and init tasks to workflow to create initial conditions in realtime commit 4e4e50803d95566e1c7967cf4cfa575391d77f25 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Fri Jan 12 00:44:59 2024 +0000 Change default HPSS_PROJECT to fim Change restart_interval_gfs to -1 so no files are written ro RERUN_RESTART directory commit 791d7a27c6b12f07d9c12ce491338e3da59eb1d8 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Jan 11 23:34:36 2024 +0000 Add namelist parameter, nord_tr, for GSL suites commit c4a41de7ebcda2f80ce69ac94bd2b3a6f5d04ed5 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Jan 11 23:31:22 2024 +0000 Add changes for running v17p8_mynn - new field table, field_table_thompson_aero_tke_progsigma - updated namelist parameters in config.fcst commit 982a1f02e3b880be43f4ae8a3f0ffbb34c056aea Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 9 02:26:22 2024 +0000 Add experiment setup script for p8_ugwpv1 commit c5a3697d22fdbb02bb80ddffee2629dddc10c702 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 9 02:19:13 2024 +0000 Add memory report to srun command in env/HERA.env commit ece7e516ca65ec0240899e7d84321310a6887595 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 9 02:13:42 2024 +0000 Updated GSL-specific files under ufs_utils.fd_gsl commit 1b153fc95b93a16eb40b791be7322100fde4a3d4 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 9 01:52:56 2024 +0000 Create new branch, gsl_ufs_dev, from dev_02jan24_9d901db Add initial GSL modifications - changes to workflow files * GSL paths, projects, entities - new FV3_GFS_v17_p8_ugwpv1_mynn suite definition file (SDF) - updated namelist parameters in ush/parsing_namelists_FV3.sh - create new GSL directories: ufs_model.fd_gsl and ufs_utils.fd_gsl * new SDFs, add instantaneous flux variables to grib2 configuration files * add Thompson tracers to initial conditions - new sync script: rsync_gsl.sh - new job files: getic.sh, makeinit_link.sh - modify build_ufs.sh to include MYNN SDF commit 9d901dbbff4d41586580316bdc094d24760119e6 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Jan 2 10:30:33 2024 -0700 Stop Gempak pgrb2 spec from modifying $DATA (#2147) This PR addresses issue #1224. The following is accomplished: - Instances where `DATA` is modified, corrections are made to use a locally defined variable such that `DATA` is no longer modified at run-time; - Shell linter exceptions are addressed accordingly; - The respective GEMPAK tasks is added to the Rocoto mesh. Resolves #1224 commit 31ad23527802f7d07171132cc620f7135c4d8cba Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Jan 2 10:27:30 2024 -0700 Reorganize NPOESS scripts (#2166) This PR addresses issue #1226. The following is accomplished: - Using the GEMPAK j-job script `JGFS_ATMOS_GEMPAK_PGRB2_SPEC`, the structure of `JGFS_ATMOS_PGRB2_SPEC_NPOESS` is updated; - Environment variables specific to the script `exgfs_atmos_grib2_special_npoess.sh` are moved accordingly; this specifically applies to the environment variable `FHOUR`, `SHOUR`, `FHINC`, `SLEEP_TIME`, and `SLEEP_INT`; - The `SLEEP_TIME` and `SLEEP_INT` parameters can now be defined at the top-level (if necessary); - Restart file checks are move to `exgfs_atmos_grib2_special_npoess.sh`; however, this may not be necessary (see `TODO` note within draft PR. Resolves #1226 commit 22bd82fa93b49e5ce98eb3f69123956dd5018049 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jan 2 11:55:03 2024 -0500 Orog fix file reorg and fix directory variable standardization (#2181) This PR makes updates to use the newly reorganized `orog/20231027` fix file version and standardizes the fix file directory variables. Changes: 1. Update UFS_UTILS hash to ce385ce 2. Update fix file version file to use new orog timestamp: `orog_ver=20231027` 3. Add ".mx$(OCNRES)" to `oro_data` filenames in scripts 4. Remove ".mx$(ocn_res)_frac" from the directory names for atmosphere resolutions under the `/orog` folder 5. Adds fix file directory variables to `config.base`, many of which are pulled up out of lower scripts; introduce `FIXcpl` 6. Renamed/replaced the following fix file directory variables: - `FV3JEDI_FIX` --> `FIXgdas` - `FIXfv3`, `FIX_orog` and `OROFIX` --> `FIXorog` - `FIX_ugwd` and `OROFIX_ugwd` --> `FIXugwd` - `FIX_am`, `FIXgsm`, `FIXSYND` --> `FIXam` - `FIX_lut` --> `FIXlut` - `FIX_aer` --> `FIXaer` - `FIX_SFC` --> `FIXsfc` - `FIX_DIR` --> `FIXgfs` - `RTMFIX` and `FIXCRTM` --> `CRTM_FIX` (is `CRTM_FIX` in crtm module, so not using `FIXcrtm`) 7. Correct the defaults for `FIXwave` in wave JJOB scripts 8. Update variable names in `*fixed_files.yaml` files, as well as update naming convention for `oro_data` files Resolves #1984 Resolves #1981 Resolves #2175 commit 03d03bf53b43914a55c384cb33eb06f6a9a443a6 Author: Andrew Collard <40322596+ADCollard@users.noreply.github.com> Date: Tue Jan 2 11:53:44 2024 -0500 Remove HIRS from GSI processing (#2183) With the update to CRTM 2.4.0.1, an issue with versioning of CRTM HIRS files has been exposed. This is documented in JCSDA/crtm#42. As HIRS radiances are no longer used in the GSI, these data should be removed from processing until a suitable update to CRTM is available. Resolves #2182 commit a3c50998d35525a39a66d5592fbf327ab3569e8b Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Fri Dec 22 18:07:48 2023 -0500 Update ufs-weather-model version (#2186) * update model to latest version which includes needed bugfixes for HR3 commit 774c7302e618370ef578bec3ccabc70486d6da1b Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Fri Dec 22 11:34:53 2023 -0500 Fix analysis post processing's handling of 0-padded negative integers (#2187) This screens for the analysis 'forecast' hour (-001) and handles the '-' and circumvents octal issues. commit d1251360325faf75af9df0608557fcd10202a883 Author: Barry Baker <bbakernoaa@users.noreply.github.com> Date: Thu Dec 21 11:23:48 2023 -0500 Fix for restoring cycling aerosols in fo-mode post COM refactor (#2179) - Update to COM reorg aerosol initialization job - Address bug in joining paths for data dependency in this job --------- Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com> commit e55a05980709288d902ad1bd894164bfa5a18a65 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Wed Dec 20 22:14:01 2023 -0500 Stop calling ufs-utils link script (#2172) The `link_workflow.sh` script was calling the ufs_utils version of the same. That step is only necessary if a user is going to run one of the stand-alone ufs-utils, which is rare. commit ef3e5ad7c63be1644c82333c95853c3caf2d8995 Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Tue Dec 19 22:02:55 2023 -0500 Fix handling of excluded hosts list (#2170) This PR fixes the issue with `create_experment.py` so that the yaml configuration file can have a string of list of strings when specifying the host name to exclude from the CI tests. commit ea74a5719efc8f0fe631c5ff93426a4299a614f3 Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Tue Dec 19 16:21:41 2023 -0500 Add COMOUT_OBS to marine obs prep (#2173) Adds `COMOUT_OBS` (defined from `COM_OBS_TMPL`) to marine obs prep task to properly handle marine obs prep files. Used to keep obs after IODA conversion, QC, and other prep. Towards resolving NOAA-EMC/GDASApp#815 commit c2500feace0bb7c04ce67a90dd3182120ee67b2e Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Tue Dec 19 14:55:20 2023 -0500 Return failed status if a build fails. (#2171) If any of the builds fail, this makes build_all.sh return the sum of the error codes encountered. Fixes #2168 commit 76fdd81cd84ed812181996a102379d8d964ba27a Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 19 13:24:34 2023 -0500 Update index.rst for new GFSv16.3.12 in ops (#2169) Refs #2096 commit a81da33e8fe7541a36f68e7a4f14a384cadd36c8 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 19 10:22:21 2023 -0500 Set place=shared for shared jobs on WCOSS2 (develop) (#2156) Set job as shared when not exclusive on WCOSS2 WCOSS2 defaults to exclusive when it is not specified as either exclusive (place=exclhost) or shared (place=shared). Now set shared when job should be shared. Refs #2135 commit 89aea972f7964dac3f515e8070d7c534812c5fb4 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Fri Dec 15 16:31:06 2023 -0500 Update gfs-utils version for Hercules (#2163) An update of gfs-utils was misssing from the previous PR that added initial Hercules support (#2128). Also includes gfs-utils update for new marine post. commit 9505cb4abc6ca2643a8ab254d14ca2000747fa44 Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Thu Dec 14 16:15:31 2023 -0500 CI Updates to support Hercules (#2155) If merged, this PR will update the CI scripts so they will run on Hercules for forecast only NOTE: This is a stop gap to issue #2131 until its block on #1588 is removed. Resolves #2154 commit c5ca82f04a2efae78389dec1c46b94ef4fb5bbe5 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Thu Dec 14 16:05:33 2023 -0500 Correct fbwind (#2161) commit f3f3e05e6325e6c2e8ddab186f1ed2f985fec49a Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Dec 14 12:06:23 2023 -0500 Add MOS jobs to rocoto mesh (#2148) Create separate jobs for GFS MOS - extracted from now-retired vrfy job Refs #2068 commit bb6151aa50c27253cb9b8f0a6601ddd58526b8b3 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Thu Dec 14 05:38:29 2023 -0500 Replace checkout script with submodules (#2142) Replaces the checkout script with git submodules. This change brings workflow in line with other repos and git standards. Due to these changes, the build system is updated slightly. First, the options that were formerly used with `checkout.sh` to reduce unneeded builds (`-g` for GSI and `-u` for UFSDA) are moved to `build_all.sh` instead. This is needed since build all will not be able to key off directories existing or not to determine which com- ponents to build. Second, the partial build system is removed. It was rarely, if ever, used, and parts of it were already ignored with the previous changes to base builds off whether directories exist. The manage externals file is also removed since that is also not being used. Following these changes, clones/checkout will need to either be recursive, or `git submodule update` will need to be called separately to make sure components are properly checked out (non-exhaustive list): ``` ## Checkout develop (method 1) git clone --recursive https://github.com/NOAA-EMC/global-workflow destination ## Checkout develop (method 2) git clone --jobs 8 https://github.com/NOAA-EMC/global-workflow destination cd destination git submodule update --init --recursive --jobs 8 ## Checkout existing branch some_branch (method 1) git clone --recursive --jobs 8 -b some_branch https://github.com/NOAA-EMC/global-workflow destination ## Checkout existing branch some_branch (method 2) git clone https://github.com/NOAA-EMC/global-workflow destination cd destination git checkout --recurse-submodules some_branch ## Checkout existing branch some_branch (method 3) git clone https://github.com/NOAA-EMC/global-workflow destination cd destination git checkout some_branch git submodule update --init --recursive --jobs 8 ## Checkout new branch new_branch git clone https://github.com/NOAA-EMC/global-workflow destination cd destination git checkout -b new_branch git submodule update --init --recursive --jobs 8 ``` The git ignore list had to be updated to use explicit paths as the wildcard paths pick up the ones that are now submodules. UFS creates files during the build process that are not in its ignore list, so that sub- module ignores the "dirty" state to avoid confusing users running `git status`. CI and documentation are also updated to reflect the changes. Resolves #2141 commit 1332188ce2409e012ec127d44880e49732f7f379 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Wed Dec 13 09:32:57 2023 -0500 Enable radar reflectivity output (#2143) Turns on radar reflectivity output from FV3. This eliminates missing values appearing in the grib2 files. commit 24d898ec0ec0c7fcbda6966988f9a986f528ed14 Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Wed Dec 13 09:32:24 2023 -0500 Fix Hercules hostname (#2150) * Allow lower or upper hostname on hercules. * Add Hercules to issue template. commit 2896bb8787698be28ad20f2298589e6e95eaf9fb Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 12 09:13:06 2023 -0500 Fix module load typo (#2145) Fix typo with loading the crtm module in the UPP hack for WCOSS2 Refs #2144 commit 29d34172a67d976f910e78158ff0337e1ef099ca Author: Cory Martin <cory.r.martin@noaa.gov> Date: Thu Dec 7 15:12:05 2023 -0500 Update GDAS hash to most recent stable versions (#2138) commit 93da9f105502e24f1a1a621f05ea49e1fdfe0102 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Thu Dec 7 10:41:05 2023 -0700 Corrected typo in a gempak job gempakncdcupapgif . (#2137) commit 3483f550db1ae35a680de49f7485ce5a11902dd9 Author: Cory Martin <cory.r.martin@noaa.gov> Date: Thu Dec 7 12:34:56 2023 -0500 Add support for FGAT and IAU for aerosol DA (#1940) commit e2664c011bf5fb03a9b1b37878cad423a1fde6f9 Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Thu Dec 7 12:33:46 2023 -0500 Enable forecast-only experiments on Hercules (#2128) This add forecast-only support for Hercules to the global workflow. Partially satisfies #1588. Co-authored-by: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> commit a29f751aed05312da3d80d396159bb5a906d6ce4 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Wed Dec 6 13:45:56 2023 -0700 Adds GEMPAK and related jobs to rocoto task mesh (#2127) commit 1fc8b5bf55581de18e786611c65bc3f84bb0c082 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Tue Dec 5 15:47:52 2023 -0500 Separate offline UPP from interpolated grib2 product generation (#2110) This PR: - Replaces the use of `JGLOBAL_ATMOS_POST` with `JGLOBAL_ATMOS_UPP` and `JGLOBAL_ATMOS_PRODUCTS`. - Introduces `JGLOBAL_ATMOS_PRODUCTS` that is responsible for creating grib2 products from the master file produced by UPP (inline from the model, or offline by running `JGLOBAL_ATMOS_UPP`). Rocoto job `atmos_products.sh`, ex-script `exglobal_atmos_products.sh` are also added along with a `config.atmos_products`. Updates are made to the relevant `env` files as well as `config.resources` to reflect the addition of this job. - reduces the number of cores needed appropriately for forecast products when there is no offline UPP necessary. - renames older `fv3gfs_dwn_nems.sh` to `interp_atmos_master.sh` and `inter_flux.sh` to `interp_atmos_sflux.sh` - removes `fv3gfs_downstream_nems.sh` as it is absorbed into `exglobal_atmos_products.sh` - removes no longer used scripts for `gfs_post.sh`, `gfs_transfer.sh` (DBN alerts are absorbed into `exglobal_atmos_products.sh`), `post.sh`, `JGLOBAL_ATMOS_POST`, `ex${RUN}_atmos_post.sh` scripts. - Rocoto workflow related scripts are updated to add `atmos_products` as a job. When `WRITE_DOPOST` is `.false.`, `upp.sh` job to run the UPP offline is also added. Dependencies have been appropriately applied. - removes `PGB1F` option that creates 1-degree grib1 products that are no longer needed in GFSv17. The hacks from (now deleted) `post.sh` had to be reinstated in `upp.sh` to load the modules from UPP instead of `load_fv3gfs_modules.sh`. commit 44186f594aaf5f8feea0eadd4c5c3b59de3a825e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 5 12:28:08 2023 -0500 Update index.rst for new GFSv16.3.11 version (#2121) Refs #1356 commit e62a3a73cd22701962b7bf210fdfee37f37a5474 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Dec 5 09:08:12 2023 -0700 Splits AWIPS jobs into seperate tasks (#2094) This PR addresses issue #1228. The following is accomplished: - Separate rocoto jobs have been created beneath `jobs/rocoto/` -- `awips_20sh` and `awips_g2sh`; these jobs replace `awips.sh` which was calling multiple J-jobs within the respective `awips.sh` scripts; - New tasks has been added to `workflow/rocoto/tasks.py` for the new AWIPS scripts; - The `gfs_cycled` and `gfs_forecast_only` modules beneath `workflow/rocoto` have been updated accordingly. Resolves #1228 commit 04d97e9aa7ab84b9754ab670074cfb19d543aa26 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 4 13:38:30 2023 -0500 Consolidate VMINMON and cleanup monitor scripts (#2088) This PR combines the GDAS and GFS versions of the VMINMON JJOB and ex-driver scripts into single GLOBAL/global versions. Additionally: * some further cleanup of the GSI-Monitor scripts is done; variable settings in ex-driver scripts are moved up to the JJOB level * the fix symlinks are consolidated into a new `fix/mon` subfolder (formerly `fix/gdas`) and copies of the gfs monitor fix files under `fix/products` are removed Resolves #1925 commit a286a11fdcbc31c8bc6d944890bc56294bc8caf6 Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Mon Dec 4 17:48:44 2023 +0000 Robust CI Restarts (#2093) Improved CI robustness for reverting back to **CI-Ready** from any given state New Features: - Improved `scancel` routine (refactored into bash "subroutine") - Improved messaging (see below) when ever a user changes state - Any and all previous build scripts and running experiments are killed as a result of reset to **Ready** Resolves #2060 commit 73621e9b20b20f85e8b21e4c1e09ed1d80ecd46f Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Sun Dec 3 11:19:19 2023 -0500 Upgrade to spack-stack/1.5.1 and Intel 2022 on non-production machines (#2084) Update module files to spack-stack/1.5.1 and compilers to Intel 2022+ on all non-production machines. commit 6d548b250688861eb20a7e0dc852a0e4ba9e64f4 Author: jiandewang <jiande.wang@noaa.gov> Date: Thu Nov 30 12:00:21 2023 -0500 Add variable tob in diag_table for ocean model output(#2105) commit c19810cce252fcdb25fd9960c05b08b5f8d8b1ad Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Wed Nov 29 15:17:36 2023 -0500 Added variables to config.prepoceanobs (#2101) commit c2d78a61a224678fb804eed19f39d1f07408ae5f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Nov 29 12:39:08 2023 -0500 Add missing cut to VDATE setting in JGFS_ATMOS_VERIFICATION (#2098) Refs #2097 commit c1c025f91ddac73aea595cc9fa4dd0bea80575fc Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Wed Nov 29 17:15:10 2023 +0000 Add wave init to GEFS (#2089) Adds the wave init job to GEFS. Since the output would be the same for every member, the job is only run once for the control, then links are created in each of the member directories pointing to that copy. New ww3_multi and ww3_shell templates for GEFS are copied from the GFS versions. The GEFS restart frequency is changed to not be zero, and the comment about not setting it to zero is copied from the gfs config.base. The restart interval for the GEFS perturbed members is changed to equal that of the control. Also fixes a bug where `RUNwave` was not defined for ensemble forecasts, and another bug in the GEFS stage_ic dependency. Resolves #2017 commit 64a2470ce29b7d8d5cb85ebcb4048ff82958f64e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Nov 29 11:26:34 2023 -0500 Adjust permissions for jobs/JGFS_ATMOS_VERIFICATION (#2095) Add execute permissions (755) commit 964b77bc6de67291973c2c70598a1f8cb72501c5 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Tue Nov 28 18:45:51 2023 +0000 Make proper j-job for MET+ (#2090) Creates a proper j-job for the metp job, moving much of the material from the `jobs/rocoto` script there (some of it within `jjob_header`). Also updates the old `COMIN` variable for the COM refactor (although it does not appear used in the verify scripts currently). This is a partial step towards restoring/improving metp functionality and remains untested. Refs #1575 commit 8c11eeb8556619e8db4e0efb6394ce5a2c1aae0f Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Thu Nov 23 10:31:32 2023 -0700 Adds FBWINDS support to global-workflow (#2082) This PR addresses issue #1221. The following was accomplished: - A new Rocoto job is added; `jobs/rocoto/fbwinds.sh`; - `workflow/applications/gfs_cycled.py` is updated to include the `fbwinds` task; - `workflow/applications/gfs_forecast_only.py` is updated to include the `fbwinds` task; - A new function is added to `workflow/rocoto/gfs_tasks.py`, `fbwinds` is added as new GFS (only) task; - `workflow/rocoto/tasks.py` is updated to include the `fbwinds` task. Resolves #1221 commit 513db190d21f9ede0724a2cd5606372b1d7605de Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Nov 21 22:52:58 2023 -0700 Adds NPOESS support to global-workflow (#2083) This PR addresses issue #1225. The following was accomplished: - A new Rocoto job is added; `jobs/rocoto/npoess.sh`; - `workflow/applications/gfs_cycled.py` is updated to include the `npoess` task; - `workflow/applications/gfs_forecast_only.py` is updated to include the `npoess` task; - A new function is added to `workflow/rocoto/gfs_tasks.py`, `npoess` is added as new GFS (only) task; - `workflow/rocoto/tasks.py` is updated to include the `npoess` task. Resolves #1225 commit 62d8e99e77ffe44784f4c61c3f2296c6d1a72413 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 17 20:25:50 2023 -0500 Retire vrfy job (#2080) Retires the `vrfy` job from the global-workflow system. All associated scripts, configs, and references to the job are removed. Additionally, the switches listed in RTD were updated to reflect new ones added in other PRs for issue #235. Resolves #2069 Refs #235 commit ea386abf11ecbacef407388e8d57e71b30148a35 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Fri Nov 17 23:59:46 2023 +0000 Enable different coupled settings for ensemble (#2030) Adds the ability to turn off some coupled components for the ensemble. To enable this, many settings are moved out of `config.fcst` and into `config.ufs` so they are calculated after any overrides of `DO_*` have been made. Some settings also had to be moved out of `config.base` for the same reason. A switch to turn on gocart is added to `config.ufs`, but unlike the other switches this one takes no arguments. The name of the ufs configure template used is converted from a partial file name to the full file name. Resolves #1692 commit fe792c0c9a1c46908cbd18c7e71eb836974cf1de Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 17 17:19:16 2023 -0500 Add --cpus-per-task to srun commands for Hera and Orion (#2077) This PR adds the `--cpus-per-task` flag to non-CFP `APRUN`/srun commands in the env files for Orion and Hera. This is needed as a result of an upgrade to SLURM on Orion that no longer exported the thread value to the environment. Issue #1996 was a hotfix to add this flag for the analysis job that was suddenly running slowly after the SLURM upgrade. A similar SLURM upgrade was done on Hera but the sysadmins there implemented a workaround so this issue did not appear there. This PR adds the `--cpus-per-task` flag for both machines...needed on Orion and as a safety measure on Hera. Also included in this PR is a fix to indentations in the `scripts/exglobal_diag.sh` script that was noticed during work for this PR. Timing differences were not observed for other jobs after adding this srun flag. Job timings were of a similar variation between control and test runs. Any potential additional speedup was not observed. The test runs also reproduced the control runs with `develop`. Resolves #2044 commit 42c943be305c297a56b104bb50727938c1ba688f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 17 15:41:34 2023 -0500 Adjust modules in post.sh for WCOSS2 (#2079) On WCOSS2 the grib_util module is named a bit different and needs the libjpeg module loaded beforehand. commit cd4e6a1987e7fd71dff06766f540b5d32c8b648d Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Fri Nov 17 11:49:32 2023 -0500 Update ufs-weather-model and remove upp hack (#2071) Updates the model to the most recent commit of ufs-weather-model. This should allow for the removal of the UPP hack that was added in PR #2042 This required changing nems.configure -> ufs.configure. Resolves #1942 commit 5a2d97e142aa4999b122fd5a130c63e59ea9f8e2 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Thu Nov 16 22:15:53 2023 +0000 Fix check for existence of preamble functions (#2066) A few of the setup scripts were checking for the existence of functions set by the preamble before calling them so they could also be used stand-alone. However, the `type` command returns `1` if the function name does not exist, which will cause the script to die is `set -e` is on. Now the `type` command fails over to an empty string. commit ed2ee7c2b1457b71b271a2c40f0dfa356e0f52f8 Author: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com> Date: Thu Nov 16 16:38:11 2023 -0500 Update UPP products for GFS v17 (#1973) Updates of generating GFS V17 UPP products to support HR3: - Update g2tmpl to 1.0.12 - Add changes to launch cfp on WCOSS2 to generate pgrb2/pgrb2b files - Changes for generating new products (MERRA2, six winter weather variables, 1km HLCY, SDEN) in pgrb2 files Resolves #1965 Resolves #1994 commit 635c4719e603538ce7cccf9ea6b31f3f84f20849 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Thu Nov 16 20:35:30 2023 +0000 Fix some rocoto dependencies (#2074) A few small errors/cleanup in the dependencies, mostly in fcst: A few small errors/cleanup have crept into the dependencies with recent changes, mostly in fcst: - Fixed the offset, as it would yield a string rocoto doesn't recognize when the interval was 24+ hrs - Removed the duplicate wave dependency. When `waveprep` is included, it depends on `waveinit` so there is no need to add a `waveinit` dependency. - Converted an interval in the archive job that was missed in #2039 Resolves #2075 commit d4c7508260975c6b94fc92fd085f39d4faf3f027 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Wed Nov 15 16:44:03 2023 -0500 Fix missing _PREV in ocean restart file location (#2070) commit 255616d37505c785bdddd5d3e39e8399110b626e Author: mdtoyNOAA <73618848+mdtoyNOAA@users.noreply.github.com> Date: Wed Nov 15 12:02:09 2023 -0700 Update functionality for Prototype HR3 UGWP (#1987) This PR adds/modifies namelist options and activates new 'ccpp' suite definition files for the updated Unified Gravity Wave Physics (UGWP) in the ufs-weather- model recently updated for HR3. The changes to UGWP are the use of the GSL drag suite for orographic gravity wave drag (GWD) and blocking, as well as the new UGWP Version 1 non-stationary GWD. See ufs-community/ufs-weather-model#1923 for details. Resolves #1986 commit be9085e62aae147e3c74602e2f82a99b374fc783 Author: Guillaume Vernieres <guillaume.vernieres@noaa.gov> Date: Wed Nov 15 13:48:58 2023 -0500 Save the required CICE history for the sea-ice DA (#2062) The hist_avg setting of CICE was changed to be an array. commit 85f1f5131ffd70061231304ea477bde0559eb67b Author: Guoqing Ge <guoqing.ge@noaa.gov> Date: Wed Nov 15 11:47:21 2023 -0700 Use assim_freq to configure "offset" in dependencies (#2039) Use the assim_freq from config.base to configure "offset" in dependencies instead of hard-coding them. Resolves #2038 commit 4e3d82ba3a1fa7cdd4443bcd4cf83b2f8835137c Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Nov 15 13:39:14 2023 -0500 Resolve ENKF archive script bugs (#2065) Fix two bugs in the exgdas_enkf_earc.sh script: 1) Replace ARCH_LIST with DATA to match changes done in PR #2000 and update path to generated archive list files. 2) Add status check and exit after script attempts to make tarball on HPSS. Refs #2064 commit 42d7f2f0c48fab898b764e09cfbbd7a9fabbae08 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 14 17:54:29 2023 -0500 Separate tracker and genesis jobs from vrfy job (#2058) This PR creates new individual jobs for the tracker and genesis jobs that are being pulled out of the `vrfy` job (issue #235). The `tracker` and `genesis` jobs will be on by default while the `genesis_fsu` job will be off by default. This mimics the current settings in the `vrfy` job. No enhancements or upgrades are made to the jobs themselves in this PR, only to separate them from the `vrfy` job. However, one change compared to how they currently run in the `vrfy` job is to no longer run the `tracker` in the gdas suite. This mimics how the `ens_tracker` package is run in operations (gfs only). Changes in this PR: 1. Create rocoto job scripts for tracker/genesis jobs. 2. Create configs for tracker/genesis jobs, as well as `config.tropcy` for shared settings. 3. Add tracker/genesis jobs to `config.resources`; use resources from the ecf scripts for `ens_tracker` jobs in operations 4. Add tracker/genesis jobs to rocoto setup for both cycled and forecast-only modes. 5. Update arguments for `jjob_header.sh` script in tracker/genesis JJOB scripts to use specific job names and configs instead of vrfy. 6. Rename `tracker_ver` to `ens_tracker_ver` in version files to mimic variable within tracker package. 7. Rename and move tracker/genesis switches to `config.base`. 8. Remove tracker/genesis jobs from `vrfy` job (`jobs/rocoto/vrfy` and `config.vrfy`). 9. Reduce vrfy job resources to accommodate tasks having been removed. Refs #235 Resolves #1988 Resolves #2048 commit 0a0d6984e094d2a551d5d8331102142e7db13fc2 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Tue Nov 14 14:08:26 2023 -0500 Enable warm starting of the model for forecast-only mode (#2031) This PR: - adds an option to warm|cold start the ufs-weather-model when setting up an experiment for GFS/GEFS - adds the capability to stage FV3 restarts when the atmosphere is warm started from FV3 restarts. This would be used in the GEFS free-forecast for part of the reforecast capability. - If a coupled model is warm started for the atmosphere, also check if mediator restarts are present. If so, stage mediator restarts to allow restarting the coupled model. Fixes #2016 commit 2cd6a589305a9ac9d3a9a0d2136e66e42f09d3bf Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Nov 14 12:05:20 2023 -0700 Moves UFS WM configuration files to `COM_CONF` (#2054) The UFS weather-model (WM) files are place in the COM_CONF path rather than the respective component model COM history paths. Resolves #2015 commit 6f1693081662f241fafc930b1afc88125f7f5aff Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 14 11:15:02 2023 -0500 Refine fit2obs job in rocoto mesh (#2047) This PR adjusts the `fit2obs` job in the rocoto mesh to better define when it exists and how the archive job dependencies accommodate it not being in the first half cycle. Changes in PR: 1. Remove the `fit2obs` job from the first half cycle `cycledef`. 2. Adjust the archive job dependencies to now include the `fit2obs` job in the new logic check added in PR #1983. The `gdasarch` job in the first half cycle will check if `gdasfit2obs` is complete OR no prior cycle exists. Also cleaned up this new logic check block some to make it a tad simpler. 3. Also, fix the addition of the `fit2obs` config to the config list in setup scripts. Now tied to whether `fit2obs` job is on instead of always adding the config to the list. Resolves #2043 commit 5730a71fa5d311e49d9bb11528b500f27f33d69d Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Nov 14 09:13:11 2023 -0700 Add `waveinit` and `waveprep` to half-cycle. (#2037) This PR addresses issue #1444. The `waveinit` and `waveprep` tasks have been added to the GDAS have cycle. The downstream dependencies for the respective GFS and GDAS forecast tasks have been removed. Resolves #1444 commit 28d2e93c3857de95b0309a089cd7dac736ccaded Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Tue Nov 14 16:11:47 2023 +0000 Update wave IC source for C384 (#2055) The default wave grid for C384 has changed since P8, so a single wave IC on the new grid is available under a different IC name. commit 81dd2d9855091315611106a5afbdaeaa15e6e4ae Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Thu Nov 9 17:19:57 2023 +0000 Fix analysis and post on Orion (#2046) Fixes a couple things to get workflow to work on Orion again: First, while #2042 allowed post to be built, the `upp.x` executable would fail due to a missing library. Now post jobs (temporarily) uses the UPP modules (plus others needed for runtime) instead of the normal workflow runtime module. This should actually fix #2041. This hack can likely be removed once we move to spack-stack. Second, the launcher command for the analysis jobs on Orion are updated to specify the number of CPUs per task. This was necessary as a recent slurm update on Orion discontinued reading that value from the scheduler. Other jobs will be handled later (see #2044). Additionally, a change is made to `module-setup.sh` that will eliminate the annoyance of `gw_setup.sh` breaking tab completion because undefined variable checking was turned on for the script but not back off. Resolves #1996 Resolves #2041 Refs #2044 commit 13d06ded4155cba2d08ef2a2cd553024c5abe29d Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Wed Nov 8 18:25:47 2023 +0000 Hack UPP version (#2042) The stack UPP was using on Orion was recently deleted, leaving us unable to build the UFS verison of UPP there. UPP has an updated version using spack-stack that works, so the checkout script is modified to check out that version of UPP after UFS has been checked out. This temporary hack can be removed once we move to a UFS version that advances the UPP version to or beyond 78f369b. Resolves #2041 commit 20f6eceb8ff58f84174a27eb849c1d74566a3e03 Author: jiandewang <jiande.wang@noaa.gov> Date: Wed Nov 8 11:14:55 2023 -0500 Add basic C1152 settings (#2020) Adding C1152 setting in host.yaml, config.base and config.stage_ic so that can run C1152 S2SW. Resolves #2019 commit 5183c43bbbd07285869feacb49d8680afe85929a Author: Barry Baker <bbakernoaa@users.noreply.github.com> Date: Tue Nov 7 01:14:40 2023 -0500 Update UFS for dust fix and remove nitrates by default (#1989) This PR updates the `ufs-weather-model` to the latest hash that included the dust fix (PR #1922). Along with this I removed the nitrates by default in support of the GEFSv13 EP4 and EP5 experiments. Removed unneeded inputs that should help with speed improvements. commit 34a73cf2ed5afefc776d9cc73b6ebf439122a1bb Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Mon Nov 6 14:00:51 2023 -0500 Reduce gdas builds to 8 #2029 (#2036) Reduce the default number of build jobs for the GDASApp to 8 from 16. This is needed for Orion as the build crashes during a linking step. Though not verified, it appears this may be caused by using too much memory with 16 builds. The issue disappears when using 8 build jobs. Resolves #2029 commit 75269e4bb9764b81589efc7d703825b80e74c8f5 Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Mon Nov 6 17:34:47 2023 +0000 Streamline CI reporting to PRs (#2026) Cleaned up the logs for CI PRs sent to the GitHub Messages: - Eliminates redundant accumulative reporting - Reports on all created or skipped experiment instantiations in a single message - Gives one line report once for each experiment completion - Single final report completion of CI See some examples in forked [PR 195](https://github.com/TerrenceMcGuinness-NOAA/global-workflow/pull/195) Resolves #2007 commit 8d55126bb0b27c79c8bee7f72b014abd34950ff9 Author: Guillaume Vernieres <guillaume.vernieres@noaa.gov> Date: Fri Nov 3 17:06:09 2023 -0400 Implement IAU Cycling Type with Marine Data Assimilation Enabled (#1944) Allows cycling in IAU mode with the S2S UFS model, soca and the GSI. Most of the work related to making IAU work was done by @JessicaMeixner-NOAA . Thanks @JessicaMeixner-NOAA ! Resolves #1943 Refs #1776 commit 2563806821d4ae3b57120bc61aa0575139a708f0 Author: jiandewang <jiande.wang@noaa.gov> Date: Fri Nov 3 11:49:37 2023 -0400 Add two ucx modules in load_ufswm_modules.sh to solve C768 and C1152 S2SW job hanging issue on WCOSS2 (#2021) commit cbdc09711a83493f363a737d1e3e46c48a09719d Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Fri Nov 3 04:09:33 2023 +0000 Fix staging of MOM data (#2028) During the update to stage_ic, the copying of the additional res_N files for 0p25 was omitted. These are now properly copied. Resolves #2027 commit bd4c56d99c23c5c41f0bd5f8a980ef99ee160888 Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Thu Nov 2 16:09:59 2023 -0400 changed optional script name vars for ocean analysis (#2025) commit 93bc918cdabee771c182c6f33cc54a20b5bb86c6 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Nov 2 16:01:18 2023 -0400 Create separate GSI monitor jobs and remove from vrfy job (#1983) This PR will move the GSI monitor tasks from the `vrfy` job into their own separate jobs in the rocoto mesh. This takes care of part of issue #235. Changes in this PR: 1. Create new individual GSI monitor jobs in the rocoto mesh to match how it is done in operations. The new jobs are: `gdasverfozn`, `gdasverfrad`, `gdasvminmon`, and `gfsvminmon`. The names correspond to the names in operations and the ecf script names. The jobs are only added to cycled mode, none of the jobs are run in forecast-only mode. 2. Updates to GSI monitor scripts: * Update `ush/jjob_header.sh` arguments in JJOB scripts to call new individual job names and configs. * Introduce `COM_*` variables and use of the `generate_com` utility. This results in the outputs landing in `COM` subfolders, like occurs in operations, instead of landing in the online archive. * Some variable cleanup in JJOB and ush scripts, includes cleaning up usage of `DATA` variable and its removal at the end of the jobs. * Add missing exit statements to `JGFS_ATMOS_VMINMON` and `JGDAS_ATMOS_VERFRAD`. 3. Create new rocoto job scripts for the new individual GSI monitor jobs. 4. Create new configs for the new individual GSI monitor jobs. 5. Add new individual GSI monitor jobs to resource configuration, using the same resources as in operations. 6. Move and rename GSI monitor job switches from `config.vrfy` to `config.base`. Also add switches to setup system. New switches to control each job being added to the rocoto mesh are: `DO_VERFOZN`, `DO_VERFRAD`, `DO_VMINMON` 7. Add GSI monitor job output to archival job and into resulting HPSS tarballs or local tarballs. This now matches what is done in operations. 8. Remove the GSI monitor tasks from the rocoto `vrfy` job and associated `config.vrfy`. Example output locations and files (not showing contents of oznmon/horiz or oznmon/time for brevity, see archival script for full list of output files): ``` kate.friedman@dlogin09:/lfs/h2/emc/ptmp/kate.friedman/comrot/testmonitor2> ll gdas.20211221/00/products/atmos/*mon gdas.20211221/00/products/atmos/minmon: total 112 -rw-r--r-- 1 kate.friedman emc 14030 Oct 25 15:00 2021122100.costs.txt -rw-r--r-- 1 kate.friedman emc 84932 Oct 25 15:00 2021122100.cost_terms.txt -rw-r--r-- 1 kate.friedman emc 808 Oct 25 15:00 2021122100.gnorms.ieee_d -rw-r--r-- 1 kate.friedman emc 808 Oct 25 15:00 2021122100.reduction.ieee_d -rw-r--r-- 1 kate.friedman emc 80 Oct 25 15:00 gnorm_data.txt gdas.20211221/00/products/atmos/oznmon: total 8 drwxr-sr-x 2 kate.friedman emc 4096 Oct 25 15:05 horiz drwxr-sr-x 2 kate.friedman emc 4096 Oct 25 15:05 time gdas.20211221/00/products/atmos/radmon: total 21036 -rw-r--r-- 1 kate.friedman emc 231 Oct 25 15:12 bad_diag.2021122100 -rw-r--r-- 1 kate.friedman emc 9035 Oct 25 15:12 bad_pen.2021122100 -rw-r--r-- 1 kate.friedman emc 1449 Oct 25 15:12 low_count.2021122100 -rw-r--r-- 1 kate.friedman emc 20523403 Oct 25 15:07 radmon_angle.tar.gz -rw-r--r-- 1 kate.friedman emc 217272 Oct 25 15:08 radmon_bcoef.tar.gz -rw-r--r-- 1 kate.friedman emc 502151 Oct 25 15:10 radmon_bcor.tar.gz -rw-r--r-- 1 kate.friedman emc 264480 Oct 25 15:12 radmon_time.tar.gz -rw-r--r-- 1 kate.friedman emc 684 Oct 25 15:12 warning.2021122100 kate.friedman@dlogin09:/lfs/h2/emc/ptmp/kate.friedman/comrot/testmonitor2> ll gfs.20211221/00/products/atmos/minmon/ total 88 -rw-r--r-- 1 kate.friedman emc 10530 Oct 25 14:55 2021122100.costs.txt -rw-r--r-- 1 kate.friedman emc 63882 Oct 25 14:55 2021122100.cost_terms.txt -rw-r--r-- 1 kate.friedman emc 808 Oct 25 14:55 2021122100.gnorms.ieee_d -rw-r--r-- 1 kate.friedman emc 608 Oct 25 14:55 2021122100.reduction.ieee_d -rw-r--r-- 1 kate.friedman emc 80 Oct 25 14:55 gnorm_data.txt ``` Lingering work and considerations: 1. Issue #1925 2. Consider not hardcoding the list of types in archival and perhaps tie it to something reliable or configurable (maybe into `config.verfozn`?): `subtyplist="gome_metop-b omi_aura ompslp_npp ompsnp_n20 ompsnp_npp ompstc8_n20 ompstc8_npp sbuv2_n19"` Resolves #1908 commit 31b05a99b77d0f6eaa8b116485a41a43867d20e1 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Thu Nov 2 12:23:32 2023 -0600 Move analysis post to new stand-alone task (#1979) This PR addresses issue #1130. A new task `postanl.sh` has been added such that the `anl` post-processing is not it's own task within the Rocoto workflow. This change prevents the GDAS experiment from breaking due to failures caused by the `anl` not being available for the first cycle. Resolves #1130 commit 247cdf8c7e10e6c98f782799fc51c069b6474e70 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Thu Nov 2 11:18:53 2023 -0600 Corrects missing local variable reference (#2023) Fixes missing `$` in variable reference in archive job. Resolves #2022 commit 241742b246da1794646b68e41c3d6fe00b95dd07 Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Wed Nov 1 14:19:55 2023 -0400 Updates to prep ocean obs task (#1870) commit 77be0ec6a3117b9f7e71a19c69ac64c09b521ecd Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Wed Nov 1 12:09:33 2023 -0600 No longer write archive lists COM (#2000) Changes the respective `.txt` files used for the HPSS archive to the `DATA` path. Each defined text file has been updated to explicitly write to `DATA` rather than `COM` such that the files are deleted rather than being archived. Resolves #760 commit 517b92f9c20c9e44abba3183325e35a95a7334a5 Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Tue Oct 31 16:33:11 2023 -0400 Parallelize the build scripts (#1998) Optimized/parallelized build scripts. A few notes: 1) The default number of build jobs is 20, but one could argue for using 40. When researching this, I looked up what the SRW is compiling with. That system uses 40 cores, which seems a little excessive, but on testing the global workflow, the actual number of cores being used at any given time rarely exceeds 16 when running with 40 cores. This is because the builds tend to use multiple threads in the beginning when compiling low-level modules while the higher-level modules are more or less serial AND because the GDASApp takes several minutes to initialize all of its subrepositories by which time the smaller builds are complete. 2) I also updated checkout.sh so that all checkouts are simultaneous. The CPU load for `git submodule` is quite low, so running 16 instead of 8 jobs at once is not much more expensive. 3) To make this work, I had to add `-j` options to most of the build scripts. The only exception is build_upp, for which the build script within the UPP is hard coded to use 6 cores. 4) I fixed a few small bugs in the build scripts along the way. 5) Lastly, this reduce the total build time from ~2.5 hours for the entire system (including GDAS and GSI in the same build) to ~40 minutes when running with `-j 40`. Resolves #1978 commit 67c050c201f92e855d09211e41a5f51ee1cb5230 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Tu…

12Jan24 global-workflow UFS: 29Jan24, 625ac02 FV3: 29Jan24, bd38c56 (GSL: 28Feb24 , a439cc7) UPP: 07Nov23, 78f369b UFS_UTILS: 22Dev23, ce385ce update pointers for ufs_model and ufs_utils add GSL C3_MYNN xml suite Change dt_inner=75 for any configuration running aerosol-aware Thompson (ltaerosol=.true.) Squashed commit of the following: commit db6a85e0ce36cec28714a4c9d6e13565253cf7bb Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Tue Mar 19 19:33:28 2024 +0000 29Jan ufs_model.fd, 29Jan FV3 with C3 files commit de7b382c4b259d99d39e8857cbcee7efe64c1956 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Mon Mar 18 16:23:05 2024 +0000 update pointer for atmos_cubed_sphere to Feb 1 hash commit 0fc27835205aaf57bdba228b1769e0ac7b37712e Merge: b2c8ef81 db06f7c5 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 14 00:17:24 2024 +0000 Merge branch 'gsl_ufs_dev' of https://github.com/NOAA-GSL/global-workflow into gsl_ufs_dev commit b2c8ef81229b5e9b8e7592cb12c2f3e8e3179d92 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Mar 13 23:51:45 2024 +0000 ccpp pointer updates to framework and physics commit 484a18df8c9022190c8900c80e40507a6771e314 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Mar 13 23:43:18 2024 +0000 ccpp pointer update in ufs_model.fd/FV3 commit db06f7c57d4cfc863352a4613c8260b0dffd9afe Merge: 579f90c1 2dbd12a6 Author: Janet Derrico <143837053+jderrico-noaa@users.noreply.github.com> Date: Wed Mar 13 15:55:48 2024 -0600 Merge pull request #43 from kayeekayee/gsl_ufs_dev update GSL C3_MYNN files and change dt_inner=75 commit 2dbd12a695c4349071ee8470e597540e71bc0292 Author: kayee.wong <kayee.wong@noaa.gov> Date: Wed Mar 13 03:48:51 2024 +0000 update GSL C3_MYNN files commit 579f90c1e0e2896710046c1885f68560ea435fa6 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 19:20:46 2024 +0000 update ufs_model.fd submodule pointer commit 2f2622d68eb8444afde9c1ddad470cfee1b63b99 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 19:15:23 2024 +0000 update ufs_model.fd submod pointer commit 706a0c52bb11af78e016014550ebd6847cc0ee19 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 19:12:35 2024 +0000 update ufs_model.fd/FV3 path commit 352f188f095e19442ade1f3fd167ff2fed501cd2 Merge: 5a8edc76 96545dcb Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 17:58:38 2024 +0000 update ufs model pointer commit 5a8edc766f2f4d3e12c692069d46c02fd766c354 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Mar 7 17:42:00 2024 +0000 update FV3 and UPP commit 96545dcb63e3f8f7dfc036961d818db15fa1a003 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Mar 6 10:05:39 2024 -0700 update pointer for ufs_model.fd commit 25c026ef03a8d8c0db0b7368d2836f0b2e866eae Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Feb 29 20:35:11 2024 +0000 update ufs_model pointer commit a28617a951c46b765aa996bfe4d28b554ec4e0a4 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Feb 22 06:16:26 2024 +0000 removed unneeded gsl directories commit 6fb4f90e8572e98c977a1d2ab385f033111f3ea7 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Feb 22 06:08:13 2024 +0000 update ufs_utils.fd pointer commit 9264f0c09239d046c5cd862d807e9b82f51dc3bd Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Feb 21 19:33:26 2024 +0000 update .gitmodules file commit f8edfa966147506f2c207728039e3a736cb95415 Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Feb 21 19:30:47 2024 +0000 update pointer to ufs_utils.fd commit 5e0d2ab02d58e6a7a40db55a149a93008b28aa8b Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Wed Feb 21 19:25:52 2024 +0000 update pointer to ufs_model.fd commit ebc9e1d02987a1c6aa8cabedf2323642748fab3c Merge: e7a81511 50cb1e6f Author: Janet Derrico <143837053+jderrico-noaa@users.noreply.github.com> Date: Thu Feb 15 13:40:33 2024 -0700 Merge pull request #40 from kayeekayee/gsl_ufs_dev Merge to 2024 Jan 12 NOAA-EMC/develop and update to 2024 Jan 29 UFS commit 50cb1e6f0c661e4c6e2ef0be4527cce58379b2c9 Author: kayee.wong <kayee.wong@noaa.gov> Date: Thu Feb 15 20:30:34 2024 +0000 Add pygraf workflow. commit 38b726125d49cff6cae4c0e5fff2438fc33143c5 Author: kayee.wong <kayee.wong@noaa.gov> Date: Wed Feb 14 17:43:15 2024 +0000 Add double quote for the arguments when calling setup_expt.py. commit 053f2025fb0b0679c7d4f84958973c1534ec050c Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 23:57:06 2024 +0000 more fix. commit 6f80ea2edc5444e275a79b371d02b6e98e963662 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 23:50:01 2024 +0000 more bug fix. commit 56e283f1f666a38a4a3b30e1528e96eeb5c622e7 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 23:40:02 2024 +0000 Minor bug fix. commit 2dcfed06ff6789eb77cf92e22b80f5475923fafc Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 23:19:03 2024 +0000 Update parameter for c3 case Add c3 and mynn template commit cc46b19ccc7cdb54878340eff79dda9e747abdf7 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 20:51:23 2024 +0000 Update INFO. Add c3 SDF in the build. commit a444ed48a23f24724853036e522b4437bf412c59 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 18:42:33 2024 +0000 Update to UFS 2024 Jan 29 version. commit 88595707c7521cdce37ae1cf78720a7827242b24 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 18:16:46 2024 +0000 Minor bug fix. commit baa0e9f10b132098d5134efaad712a51ebc26b83 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 17:59:27 2024 +0000 Update parameters for setup_expt.py in p8_ugwpv1.sh to resdetatmos and comroot. commit 5875f06903f82a47fafb05f89f840e3b099d18d8 Author: kayee.wong <kayee.wong@noaa.gov> Date: Tue Feb 13 17:51:11 2024 +0000 Remove old gsl SDFs. Remove 'rrtmg_lw_pre' from C3 and MYNN SDFs. commit 9e0d1342f4e1edce96c9b2baeec55c2cffb964cd Author: kayee.wong <kayee.wong@noaa.gov> Date: Thu Feb 8 22:14:01 2024 +0000 Merge to 2024 Jan 12 NOAA-EMC/develop. Squashed commit of the following: commit c59047614c29f6ec15a4d4a6fa1855929287debd Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Fri Jan 12 19:21:02 2024 -0500 Update hash to ufs-weather-model. The noahmptable.tbl was reorganized, so update link_workflow.sh to use the same one used in UFSWM RT (#2219) commit c041968e165c07da785376f1441374687b55d6cc Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Jan 12 12:09:35 2024 -0500 Add ocean resolution to setup_expt invocation and retire/reduce COMROT/ROTDIR usage (#2214) Two series of updates: 1) Update setup scripts to now allow users to provide ocean resolution 2) Housekeeping to retire the `COMROT` variable, replacing it with other variables as needed, and reduce the `ROTDIR` variable usage. Both updates change options for the workflow setup API. Refs #2061 commit 997f97816493d9ed0242e169b6dcf84e5c9338d6 Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Fri Jan 12 10:46:36 2024 -0500 Allow use of ocean obs prep in WCDA cycling and remove R2D2 (#2215) Enables use of ocean obs prep task in WCDA cycling and removes R2D2 from same. Runs task gdasprepoceanobs before gdasocnanalprep -- obtains ocean data nc4 files from DMPDIR, processes them into IODA format and copies them to COM_OBS. Replaces the current R2D2 processing. commit 12a5bb192ab6282d44c008c06dc14947abd37249 Merge: 4cb58020 6492c2da Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Fri Jan 12 09:26:27 2024 -0500 Merge pull request #2217 from DavidHuber-NOAA/update/versions Update and clean up version and module files commit 6492c2da5f49bd31575d0bef5278c9a7f8ba3412 Author: David Huber <david.huber@noaa.gov> Date: Thu Jan 11 11:49:08 2024 -0600 Update orion module/version files for met/metplus #2123 commit 94c9937f0bff380b0ebd6acdcfd2509e1ae99389 Author: DavidHuber <david.huber@noaa.gov> Date: Thu Jan 11 17:42:53 2024 +0000 Comment met/metplus out from Hera modulefile. #2123 commit 8c32f8b7d00bba6e3e954f149e6548fb27713a3c Merge: a65e4c67 4cb58020 Author: David Huber <david.huber@noaa.gov> Date: Thu Jan 11 11:34:44 2024 -0600 Merge branch 'develop' of github.com:noaa-emc/global-workflow into develop commit a65e4c675f21dbe72198d263e85e894e62b41e13 Author: David Huber <david.huber@noaa.gov> Date: Thu Jan 11 11:34:19 2024 -0600 Initial update of version/module files #2123 commit 4cb580201af68c1c0e2ae19faf0727dcbbe43b4d Author: souopgui <souopgui@users.noreply.github.com> Date: Wed Jan 10 08:30:22 2024 -0600 Fix OpenMP over-allocation of resources in exglobal_atmos_products.sh when running MPMD tasks (#2212) Fix OpenMP over-allocation of resources running MPMD tasks Co-authored-by: Innocent Souopgui <isouopgui@redlineperf.com> commit b056b531faee6929687cb8a588ffafa1a66426fb Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Mon Jan 8 17:28:05 2024 -0500 Add Hercules as valid machine in CI scripts (#2207) Few updates to CI scripts to include names for hercules that where missed the first time. commit 6574d29a8c26b0695614874c344bccc5182363f4 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Mon Jan 8 17:25:47 2024 -0500 Fix invalid GH action and restart file name (#2210) Resolves a typo that leads to an invalid workflow yaml and fixes the restart filename in restart detection. Resolves #2205 commit 69605eac299df381ea9e0e329654487e26380ff5 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Mon Jan 8 17:00:28 2024 -0500 Stop attempting to comment link to RTD for non-PRs (#2209) Adds a check so comments with a link to documentation are only generated for PRs. commit 4e160a895bfb31c281e21557dd86c13954a1a967 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Mon Jan 8 13:10:15 2024 -0500 Enable UPP for GOES processing (#2203) Wnables the creation of special master grib2 files from UPP for GOES processing commit c15875b6dbf685327af9316ee43b3d01f0fc815e Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Mon Jan 8 09:56:06 2024 -0500 Port cycling to Hercules (#2196) Adds cycled support for Hercules (excluding gsi-monitor). Partially resolves #1588 GSI monitoring is disabled on Hercules due to missing Perl modules. That will be enabled in a later PR. commit ef6827dd6abdab2996d1e19f9e0ff5d3071e0fdd Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Mon Jan 8 09:43:12 2024 -0500 Refactor rocoto task XML creation (#2189) Refactors the rocoto task generation to be recursive. This will allow nested metatasks to loop over multiple variables, which is needed for GEFS product generation. As part of this refactor, there is no longer separate arguments to designate metatasks. Instead, task dicts can include a nested 'task_dict' as well as a 'var_dict' containing the variables to loop over. The nested task dict can then either have another layer, or be the innermost task. To accommodate the new recursive nature, some defaults that were previously defined in create_wf_task() had to be pushed down into the function that creates the innermost task. Also, former keywords have been absorbed by the task dict. Refs #823 Refs #827 commit 2b81cfac16f103fb29b3aeb9748941787abf7287 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Mon Jan 8 09:41:03 2024 -0500 Update fix versions (#2198) Updates fix versions for a few components: - Update cice and mom6 versions to support C96/1p00 marine - Update wave to change betamax setting for glo_025 waves Resolves #2004 Resolves #2107 commit e7a81511e37f86e881da020e06b95990b470d952 Merge: af47b77c 75ad3754 Author: Janet Derrico <143837053+jderrico-noaa@users.noreply.github.com> Date: Thu Feb 1 13:14:02 2024 -0700 Merge pull request #37 from jderrico-noaa/gsl_ufs_dev Add GSL archive script and correct typos/fixed paths commit 75ad3754f8bef5411c2570b5e392cd08e95cb6cb Author: jderrico-noaa <janet.m.derrico@noaa.gov> Date: Thu Feb 1 20:00:52 2024 +0000 adding consistent [[ ]] for if statements commit 67b99668c82a5fd8c42479b9b1bfe8b0bad0be25 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Feb 1 19:37:47 2024 +0000 Updated HOMEgfs in GSL XML templates commit 4d3719c086e7907a6eeff03112042d392e0d8c5e Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Feb 1 17:27:39 2024 +0000 Correct syntax errors in GSL scripts Add new GSL archive script for archiving grib2 and ICs, but no netcdf files commit 4309dd0b3b2d5625e7e1740d7cd3e39aacd5bc29 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Mon Jan 29 18:05:45 2024 +0000 Add GSL diag tables to parm/ufs/fv3 Update GSL template for hera Create EMC and GSL versions of files under workflow/rocoto - tasks.py, workflow_tasks.py commit af47b77c7ee59a11c798995b4362b57e9096b090 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 02:07:43 2024 +0000 Create GSL version of archive script commit 529d9f71f97b6e643e76a53bc9871901ae861faf Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 01:37:09 2024 +0000 Create GSL version of tracker.sh - this is a placeholder with changes from last year's HFIP experiment; will likely need to be updated in the future commit 8457e12c313bee602265b863129734354b019271 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 01:27:42 2024 +0000 Link config.base.emc.dyn_hera to config.base.emc.dyn commit 7a05f5bd947944d8c3be828aeef9cc03bf9e073a Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 01:22:54 2024 +0000 Create GSL version of hpssarch_gen.sh - assume we only run cold starts - archive only 0p25 grib2 files (no 0p50 opr 1p00) - assume no pgrb2b or flux files are created so no need to archive to HPSS commit 98f5d6b16437e2a340bf16f83187e389a53f8bf0 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sat Jan 27 00:24:06 2024 +0000 Update workflow directory - add GSL template for jet (based on last year's experiment) - create EMC and GSL versions of yaml files under hosts; defaults point to GSL files commit 38a7e5629ceeb23d399643a021e9a0a88468a07c Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Jan 25 18:40:37 2024 +0000 Update atmos_products configuration file for GSL - set downset to 1 so pgrb2b files are not created - set FLXGF to "NO" so interpolated sflux.1p00 files are not created commit fe8a953658d092ce2b597e14f31678624606fd8a Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Jan 25 17:02:25 2024 +0000 Update nodes for gfsfcst task in GSL template for hera to match default configuration in config.ufs (12x12, 2 threads, 1 write group, 40 write tasks ==> 56 nodes) Increase walltime to 4:10 for gfsfcst task commit 9d85b0f6d50e8ed142557fcb87c89d2e5d63c617 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 23 19:08:52 2024 +0000 Added default location for PTMP/STMP in workflow/hosts/hera.yaml Added GSL XML template for hera commit 1cf317d327fae78c5469712c9e5a6aa1ffa4b23b Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Wed Jan 17 22:33:13 2024 +0000 Add sjet partition Make syntax consistent in "if" statements in config.resources commit 2755e203751f50113849b06769173285e093290b Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Wed Jan 17 22:32:26 2024 +0000 Update configuration files for GSL - create Hera and Jet versions of config.base.emc.dyn - correct typo in config.fcst - create different versions of config.ufs; default is 12x12, 2 threads, 1 write group/40 write tasks (56 nodes) commit 3c0c126a376af31866a93aef4cdd0b4145150c58 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 16 17:32:25 2024 +0000 Add script for remapping 1/4 degree grib2 grids to other domains commit f217d4ed9a500e9a1bdcc17548729d972a1763ac Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 16 16:46:25 2024 +0000 Update link script for ufs_utils.fd commit 5b21b31900955013b4e8106d3ae906b9da93b361 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 16 16:45:25 2024 +0000 Add GSL archive scripts for initial conditions commit abb88baf9dd536a3b2ea1e24eaa99cbfe85af799 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 16 16:42:17 2024 +0000 Move configuration files for getic and init from jobs/rocoto to parm/config/gfs commit 45b235180719ab79d2514f0317207fbebfb8aedd Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sun Jan 14 03:21:15 2024 +0000 Add suite definition file for v17p8_ugwpv1_c3 to sorc/ufs_model.fd_gsl commit 147b1fce99254dcb602c333cc559feaa9a396e81 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Sun Jan 14 01:57:22 2024 +0000 Add getic and init tasks to workflow to create initial conditions in realtime commit 4e4e50803d95566e1c7967cf4cfa575391d77f25 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Fri Jan 12 00:44:59 2024 +0000 Change default HPSS_PROJECT to fim Change restart_interval_gfs to -1 so no files are written ro RERUN_RESTART directory commit 791d7a27c6b12f07d9c12ce491338e3da59eb1d8 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Jan 11 23:34:36 2024 +0000 Add namelist parameter, nord_tr, for GSL suites commit c4a41de7ebcda2f80ce69ac94bd2b3a6f5d04ed5 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Thu Jan 11 23:31:22 2024 +0000 Add changes for running v17p8_mynn - new field table, field_table_thompson_aero_tke_progsigma - updated namelist parameters in config.fcst commit 982a1f02e3b880be43f4ae8a3f0ffbb34c056aea Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 9 02:26:22 2024 +0000 Add experiment setup script for p8_ugwpv1 commit c5a3697d22fdbb02bb80ddffee2629dddc10c702 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 9 02:19:13 2024 +0000 Add memory report to srun command in env/HERA.env commit ece7e516ca65ec0240899e7d84321310a6887595 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 9 02:13:42 2024 +0000 Updated GSL-specific files under ufs_utils.fd_gsl commit 1b153fc95b93a16eb40b791be7322100fde4a3d4 Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Date: Tue Jan 9 01:52:56 2024 +0000 Create new branch, gsl_ufs_dev, from dev_02jan24_9d901db Add initial GSL modifications - changes to workflow files * GSL paths, projects, entities - new FV3_GFS_v17_p8_ugwpv1_mynn suite definition file (SDF) - updated namelist parameters in ush/parsing_namelists_FV3.sh - create new GSL directories: ufs_model.fd_gsl and ufs_utils.fd_gsl * new SDFs, add instantaneous flux variables to grib2 configuration files * add Thompson tracers to initial conditions - new sync script: rsync_gsl.sh - new job files: getic.sh, makeinit_link.sh - modify build_ufs.sh to include MYNN SDF commit 9d901dbbff4d41586580316bdc094d24760119e6 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Jan 2 10:30:33 2024 -0700 Stop Gempak pgrb2 spec from modifying $DATA (#2147) This PR addresses issue #1224. The following is accomplished: - Instances where `DATA` is modified, corrections are made to use a locally defined variable such that `DATA` is no longer modified at run-time; - Shell linter exceptions are addressed accordingly; - The respective GEMPAK tasks is added to the Rocoto mesh. Resolves #1224 commit 31ad23527802f7d07171132cc620f7135c4d8cba Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Jan 2 10:27:30 2024 -0700 Reorganize NPOESS scripts (#2166) This PR addresses issue #1226. The following is accomplished: - Using the GEMPAK j-job script `JGFS_ATMOS_GEMPAK_PGRB2_SPEC`, the structure of `JGFS_ATMOS_PGRB2_SPEC_NPOESS` is updated; - Environment variables specific to the script `exgfs_atmos_grib2_special_npoess.sh` are moved accordingly; this specifically applies to the environment variable `FHOUR`, `SHOUR`, `FHINC`, `SLEEP_TIME`, and `SLEEP_INT`; - The `SLEEP_TIME` and `SLEEP_INT` parameters can now be defined at the top-level (if necessary); - Restart file checks are move to `exgfs_atmos_grib2_special_npoess.sh`; however, this may not be necessary (see `TODO` note within draft PR. Resolves #1226 commit 22bd82fa93b49e5ce98eb3f69123956dd5018049 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jan 2 11:55:03 2024 -0500 Orog fix file reorg and fix directory variable standardization (#2181) This PR makes updates to use the newly reorganized `orog/20231027` fix file version and standardizes the fix file directory variables. Changes: 1. Update UFS_UTILS hash to ce385ce 2. Update fix file version file to use new orog timestamp: `orog_ver=20231027` 3. Add ".mx$(OCNRES)" to `oro_data` filenames in scripts 4. Remove ".mx$(ocn_res)_frac" from the directory names for atmosphere resolutions under the `/orog` folder 5. Adds fix file directory variables to `config.base`, many of which are pulled up out of lower scripts; introduce `FIXcpl` 6. Renamed/replaced the following fix file directory variables: - `FV3JEDI_FIX` --> `FIXgdas` - `FIXfv3`, `FIX_orog` and `OROFIX` --> `FIXorog` - `FIX_ugwd` and `OROFIX_ugwd` --> `FIXugwd` - `FIX_am`, `FIXgsm`, `FIXSYND` --> `FIXam` - `FIX_lut` --> `FIXlut` - `FIX_aer` --> `FIXaer` - `FIX_SFC` --> `FIXsfc` - `FIX_DIR` --> `FIXgfs` - `RTMFIX` and `FIXCRTM` --> `CRTM_FIX` (is `CRTM_FIX` in crtm module, so not using `FIXcrtm`) 7. Correct the defaults for `FIXwave` in wave JJOB scripts 8. Update variable names in `*fixed_files.yaml` files, as well as update naming convention for `oro_data` files Resolves #1984 Resolves #1981 Resolves #2175 commit 03d03bf53b43914a55c384cb33eb06f6a9a443a6 Author: Andrew Collard <40322596+ADCollard@users.noreply.github.com> Date: Tue Jan 2 11:53:44 2024 -0500 Remove HIRS from GSI processing (#2183) With the update to CRTM 2.4.0.1, an issue with versioning of CRTM HIRS files has been exposed. This is documented in JCSDA/crtm#42. As HIRS radiances are no longer used in the GSI, these data should be removed from processing until a suitable update to CRTM is available. Resolves #2182 commit a3c50998d35525a39a66d5592fbf327ab3569e8b Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Fri Dec 22 18:07:48 2023 -0500 Update ufs-weather-model version (#2186) * update model to latest version which includes needed bugfixes for HR3 commit 774c7302e618370ef578bec3ccabc70486d6da1b Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Fri Dec 22 11:34:53 2023 -0500 Fix analysis post processing's handling of 0-padded negative integers (#2187) This screens for the analysis 'forecast' hour (-001) and handles the '-' and circumvents octal issues. commit d1251360325faf75af9df0608557fcd10202a883 Author: Barry Baker <bbakernoaa@users.noreply.github.com> Date: Thu Dec 21 11:23:48 2023 -0500 Fix for restoring cycling aerosols in fo-mode post COM refactor (#2179) - Update to COM reorg aerosol initialization job - Address bug in joining paths for data dependency in this job --------- Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com> commit e55a05980709288d902ad1bd894164bfa5a18a65 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Wed Dec 20 22:14:01 2023 -0500 Stop calling ufs-utils link script (#2172) The `link_workflow.sh` script was calling the ufs_utils version of the same. That step is only necessary if a user is going to run one of the stand-alone ufs-utils, which is rare. commit ef3e5ad7c63be1644c82333c95853c3caf2d8995 Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Tue Dec 19 22:02:55 2023 -0500 Fix handling of excluded hosts list (#2170) This PR fixes the issue with `create_experment.py` so that the yaml configuration file can have a string of list of strings when specifying the host name to exclude from the CI tests. commit ea74a5719efc8f0fe631c5ff93426a4299a614f3 Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Tue Dec 19 16:21:41 2023 -0500 Add COMOUT_OBS to marine obs prep (#2173) Adds `COMOUT_OBS` (defined from `COM_OBS_TMPL`) to marine obs prep task to properly handle marine obs prep files. Used to keep obs after IODA conversion, QC, and other prep. Towards resolving NOAA-EMC/GDASApp#815 commit c2500feace0bb7c04ce67a90dd3182120ee67b2e Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Tue Dec 19 14:55:20 2023 -0500 Return failed status if a build fails. (#2171) If any of the builds fail, this makes build_all.sh return the sum of the error codes encountered. Fixes #2168 commit 76fdd81cd84ed812181996a102379d8d964ba27a Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 19 13:24:34 2023 -0500 Update index.rst for new GFSv16.3.12 in ops (#2169) Refs #2096 commit a81da33e8fe7541a36f68e7a4f14a384cadd36c8 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 19 10:22:21 2023 -0500 Set place=shared for shared jobs on WCOSS2 (develop) (#2156) Set job as shared when not exclusive on WCOSS2 WCOSS2 defaults to exclusive when it is not specified as either exclusive (place=exclhost) or shared (place=shared). Now set shared when job should be shared. Refs #2135 commit 89aea972f7964dac3f515e8070d7c534812c5fb4 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Fri Dec 15 16:31:06 2023 -0500 Update gfs-utils version for Hercules (#2163) An update of gfs-utils was misssing from the previous PR that added initial Hercules support (#2128). Also includes gfs-utils update for new marine post. commit 9505cb4abc6ca2643a8ab254d14ca2000747fa44 Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Thu Dec 14 16:15:31 2023 -0500 CI Updates to support Hercules (#2155) If merged, this PR will update the CI scripts so they will run on Hercules for forecast only NOTE: This is a stop gap to issue #2131 until its block on #1588 is removed. Resolves #2154 commit c5ca82f04a2efae78389dec1c46b94ef4fb5bbe5 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Thu Dec 14 16:05:33 2023 -0500 Correct fbwind (#2161) commit f3f3e05e6325e6c2e8ddab186f1ed2f985fec49a Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Dec 14 12:06:23 2023 -0500 Add MOS jobs to rocoto mesh (#2148) Create separate jobs for GFS MOS - extracted from now-retired vrfy job Refs #2068 commit bb6151aa50c27253cb9b8f0a6601ddd58526b8b3 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Thu Dec 14 05:38:29 2023 -0500 Replace checkout script with submodules (#2142) Replaces the checkout script with git submodules. This change brings workflow in line with other repos and git standards. Due to these changes, the build system is updated slightly. First, the options that were formerly used with `checkout.sh` to reduce unneeded builds (`-g` for GSI and `-u` for UFSDA) are moved to `build_all.sh` instead. This is needed since build all will not be able to key off directories existing or not to determine which com- ponents to build. Second, the partial build system is removed. It was rarely, if ever, used, and parts of it were already ignored with the previous changes to base builds off whether directories exist. The manage externals file is also removed since that is also not being used. Following these changes, clones/checkout will need to either be recursive, or `git submodule update` will need to be called separately to make sure components are properly checked out (non-exhaustive list): ``` ## Checkout develop (method 1) git clone --recursive https://github.com/NOAA-EMC/global-workflow destination ## Checkout develop (method 2) git clone --jobs 8 https://github.com/NOAA-EMC/global-workflow destination cd destination git submodule update --init --recursive --jobs 8 ## Checkout existing branch some_branch (method 1) git clone --recursive --jobs 8 -b some_branch https://github.com/NOAA-EMC/global-workflow destination ## Checkout existing branch some_branch (method 2) git clone https://github.com/NOAA-EMC/global-workflow destination cd destination git checkout --recurse-submodules some_branch ## Checkout existing branch some_branch (method 3) git clone https://github.com/NOAA-EMC/global-workflow destination cd destination git checkout some_branch git submodule update --init --recursive --jobs 8 ## Checkout new branch new_branch git clone https://github.com/NOAA-EMC/global-workflow destination cd destination git checkout -b new_branch git submodule update --init --recursive --jobs 8 ``` The git ignore list had to be updated to use explicit paths as the wildcard paths pick up the ones that are now submodules. UFS creates files during the build process that are not in its ignore list, so that sub- module ignores the "dirty" state to avoid confusing users running `git status`. CI and documentation are also updated to reflect the changes. Resolves #2141 commit 1332188ce2409e012ec127d44880e49732f7f379 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Wed Dec 13 09:32:57 2023 -0500 Enable radar reflectivity output (#2143) Turns on radar reflectivity output from FV3. This eliminates missing values appearing in the grib2 files. commit 24d898ec0ec0c7fcbda6966988f9a986f528ed14 Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Wed Dec 13 09:32:24 2023 -0500 Fix Hercules hostname (#2150) * Allow lower or upper hostname on hercules. * Add Hercules to issue template. commit 2896bb8787698be28ad20f2298589e6e95eaf9fb Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 12 09:13:06 2023 -0500 Fix module load typo (#2145) Fix typo with loading the crtm module in the UPP hack for WCOSS2 Refs #2144 commit 29d34172a67d976f910e78158ff0337e1ef099ca Author: Cory Martin <cory.r.martin@noaa.gov> Date: Thu Dec 7 15:12:05 2023 -0500 Update GDAS hash to most recent stable versions (#2138) commit 93da9f105502e24f1a1a621f05ea49e1fdfe0102 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Thu Dec 7 10:41:05 2023 -0700 Corrected typo in a gempak job gempakncdcupapgif . (#2137) commit 3483f550db1ae35a680de49f7485ce5a11902dd9 Author: Cory Martin <cory.r.martin@noaa.gov> Date: Thu Dec 7 12:34:56 2023 -0500 Add support for FGAT and IAU for aerosol DA (#1940) commit e2664c011bf5fb03a9b1b37878cad423a1fde6f9 Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Thu Dec 7 12:33:46 2023 -0500 Enable forecast-only experiments on Hercules (#2128) This add forecast-only support for Hercules to the global workflow. Partially satisfies #1588. Co-authored-by: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> commit a29f751aed05312da3d80d396159bb5a906d6ce4 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Wed Dec 6 13:45:56 2023 -0700 Adds GEMPAK and related jobs to rocoto task mesh (#2127) commit 1fc8b5bf55581de18e786611c65bc3f84bb0c082 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Tue Dec 5 15:47:52 2023 -0500 Separate offline UPP from interpolated grib2 product generation (#2110) This PR: - Replaces the use of `JGLOBAL_ATMOS_POST` with `JGLOBAL_ATMOS_UPP` and `JGLOBAL_ATMOS_PRODUCTS`. - Introduces `JGLOBAL_ATMOS_PRODUCTS` that is responsible for creating grib2 products from the master file produced by UPP (inline from the model, or offline by running `JGLOBAL_ATMOS_UPP`). Rocoto job `atmos_products.sh`, ex-script `exglobal_atmos_products.sh` are also added along with a `config.atmos_products`. Updates are made to the relevant `env` files as well as `config.resources` to reflect the addition of this job. - reduces the number of cores needed appropriately for forecast products when there is no offline UPP necessary. - renames older `fv3gfs_dwn_nems.sh` to `interp_atmos_master.sh` and `inter_flux.sh` to `interp_atmos_sflux.sh` - removes `fv3gfs_downstream_nems.sh` as it is absorbed into `exglobal_atmos_products.sh` - removes no longer used scripts for `gfs_post.sh`, `gfs_transfer.sh` (DBN alerts are absorbed into `exglobal_atmos_products.sh`), `post.sh`, `JGLOBAL_ATMOS_POST`, `ex${RUN}_atmos_post.sh` scripts. - Rocoto workflow related scripts are updated to add `atmos_products` as a job. When `WRITE_DOPOST` is `.false.`, `upp.sh` job to run the UPP offline is also added. Dependencies have been appropriately applied. - removes `PGB1F` option that creates 1-degree grib1 products that are no longer needed in GFSv17. The hacks from (now deleted) `post.sh` had to be reinstated in `upp.sh` to load the modules from UPP instead of `load_fv3gfs_modules.sh`. commit 44186f594aaf5f8feea0eadd4c5c3b59de3a825e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 5 12:28:08 2023 -0500 Update index.rst for new GFSv16.3.11 version (#2121) Refs #1356 commit e62a3a73cd22701962b7bf210fdfee37f37a5474 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Dec 5 09:08:12 2023 -0700 Splits AWIPS jobs into seperate tasks (#2094) This PR addresses issue #1228. The following is accomplished: - Separate rocoto jobs have been created beneath `jobs/rocoto/` -- `awips_20sh` and `awips_g2sh`; these jobs replace `awips.sh` which was calling multiple J-jobs within the respective `awips.sh` scripts; - New tasks has been added to `workflow/rocoto/tasks.py` for the new AWIPS scripts; - The `gfs_cycled` and `gfs_forecast_only` modules beneath `workflow/rocoto` have been updated accordingly. Resolves #1228 commit 04d97e9aa7ab84b9754ab670074cfb19d543aa26 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 4 13:38:30 2023 -0500 Consolidate VMINMON and cleanup monitor scripts (#2088) This PR combines the GDAS and GFS versions of the VMINMON JJOB and ex-driver scripts into single GLOBAL/global versions. Additionally: * some further cleanup of the GSI-Monitor scripts is done; variable settings in ex-driver scripts are moved up to the JJOB level * the fix symlinks are consolidated into a new `fix/mon` subfolder (formerly `fix/gdas`) and copies of the gfs monitor fix files under `fix/products` are removed Resolves #1925 commit a286a11fdcbc31c8bc6d944890bc56294bc8caf6 Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Mon Dec 4 17:48:44 2023 +0000 Robust CI Restarts (#2093) Improved CI robustness for reverting back to **CI-Ready** from any given state New Features: - Improved `scancel` routine (refactored into bash "subroutine") - Improved messaging (see below) when ever a user changes state - Any and all previous build scripts and running experiments are killed as a result of reset to **Ready** Resolves #2060 commit 73621e9b20b20f85e8b21e4c1e09ed1d80ecd46f Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Sun Dec 3 11:19:19 2023 -0500 Upgrade to spack-stack/1.5.1 and Intel 2022 on non-production machines (#2084) Update module files to spack-stack/1.5.1 and compilers to Intel 2022+ on all non-production machines. commit 6d548b250688861eb20a7e0dc852a0e4ba9e64f4 Author: jiandewang <jiande.wang@noaa.gov> Date: Thu Nov 30 12:00:21 2023 -0500 Add variable tob in diag_table for ocean model output(#2105) commit c19810cce252fcdb25fd9960c05b08b5f8d8b1ad Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Wed Nov 29 15:17:36 2023 -0500 Added variables to config.prepoceanobs (#2101) commit c2d78a61a224678fb804eed19f39d1f07408ae5f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Nov 29 12:39:08 2023 -0500 Add missing cut to VDATE setting in JGFS_ATMOS_VERIFICATION (#2098) Refs #2097 commit c1c025f91ddac73aea595cc9fa4dd0bea80575fc Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Wed Nov 29 17:15:10 2023 +0000 Add wave init to GEFS (#2089) Adds the wave init job to GEFS. Since the output would be the same for every member, the job is only run once for the control, then links are created in each of the member directories pointing to that copy. New ww3_multi and ww3_shell templates for GEFS are copied from the GFS versions. The GEFS restart frequency is changed to not be zero, and the comment about not setting it to zero is copied from the gfs config.base. The restart interval for the GEFS perturbed members is changed to equal that of the control. Also fixes a bug where `RUNwave` was not defined for ensemble forecasts, and another bug in the GEFS stage_ic dependency. Resolves #2017 commit 64a2470ce29b7d8d5cb85ebcb4048ff82958f64e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Nov 29 11:26:34 2023 -0500 Adjust permissions for jobs/JGFS_ATMOS_VERIFICATION (#2095) Add execute permissions (755) commit 964b77bc6de67291973c2c70598a1f8cb72501c5 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Tue Nov 28 18:45:51 2023 +0000 Make proper j-job for MET+ (#2090) Creates a proper j-job for the metp job, moving much of the material from the `jobs/rocoto` script there (some of it within `jjob_header`). Also updates the old `COMIN` variable for the COM refactor (although it does not appear used in the verify scripts currently). This is a partial step towards restoring/improving metp functionality and remains untested. Refs #1575 commit 8c11eeb8556619e8db4e0efb6394ce5a2c1aae0f Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Thu Nov 23 10:31:32 2023 -0700 Adds FBWINDS support to global-workflow (#2082) This PR addresses issue #1221. The following was accomplished: - A new Rocoto job is added; `jobs/rocoto/fbwinds.sh`; - `workflow/applications/gfs_cycled.py` is updated to include the `fbwinds` task; - `workflow/applications/gfs_forecast_only.py` is updated to include the `fbwinds` task; - A new function is added to `workflow/rocoto/gfs_tasks.py`, `fbwinds` is added as new GFS (only) task; - `workflow/rocoto/tasks.py` is updated to include the `fbwinds` task. Resolves #1221 commit 513db190d21f9ede0724a2cd5606372b1d7605de Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Nov 21 22:52:58 2023 -0700 Adds NPOESS support to global-workflow (#2083) This PR addresses issue #1225. The following was accomplished: - A new Rocoto job is added; `jobs/rocoto/npoess.sh`; - `workflow/applications/gfs_cycled.py` is updated to include the `npoess` task; - `workflow/applications/gfs_forecast_only.py` is updated to include the `npoess` task; - A new function is added to `workflow/rocoto/gfs_tasks.py`, `npoess` is added as new GFS (only) task; - `workflow/rocoto/tasks.py` is updated to include the `npoess` task. Resolves #1225 commit 62d8e99e77ffe44784f4c61c3f2296c6d1a72413 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 17 20:25:50 2023 -0500 Retire vrfy job (#2080) Retires the `vrfy` job from the global-workflow system. All associated scripts, configs, and references to the job are removed. Additionally, the switches listed in RTD were updated to reflect new ones added in other PRs for issue #235. Resolves #2069 Refs #235 commit ea386abf11ecbacef407388e8d57e71b30148a35 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Fri Nov 17 23:59:46 2023 +0000 Enable different coupled settings for ensemble (#2030) Adds the ability to turn off some coupled components for the ensemble. To enable this, many settings are moved out of `config.fcst` and into `config.ufs` so they are calculated after any overrides of `DO_*` have been made. Some settings also had to be moved out of `config.base` for the same reason. A switch to turn on gocart is added to `config.ufs`, but unlike the other switches this one takes no arguments. The name of the ufs configure template used is converted from a partial file name to the full file name. Resolves #1692 commit fe792c0c9a1c46908cbd18c7e71eb836974cf1de Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 17 17:19:16 2023 -0500 Add --cpus-per-task to srun commands for Hera and Orion (#2077) This PR adds the `--cpus-per-task` flag to non-CFP `APRUN`/srun commands in the env files for Orion and Hera. This is needed as a result of an upgrade to SLURM on Orion that no longer exported the thread value to the environment. Issue #1996 was a hotfix to add this flag for the analysis job that was suddenly running slowly after the SLURM upgrade. A similar SLURM upgrade was done on Hera but the sysadmins there implemented a workaround so this issue did not appear there. This PR adds the `--cpus-per-task` flag for both machines...needed on Orion and as a safety measure on Hera. Also included in this PR is a fix to indentations in the `scripts/exglobal_diag.sh` script that was noticed during work for this PR. Timing differences were not observed for other jobs after adding this srun flag. Job timings were of a similar variation between control and test runs. Any potential additional speedup was not observed. The test runs also reproduced the control runs with `develop`. Resolves #2044 commit 42c943be305c297a56b104bb50727938c1ba688f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 17 15:41:34 2023 -0500 Adjust modules in post.sh for WCOSS2 (#2079) On WCOSS2 the grib_util module is named a bit different and needs the libjpeg module loaded beforehand. commit cd4e6a1987e7fd71dff06766f540b5d32c8b648d Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Fri Nov 17 11:49:32 2023 -0500 Update ufs-weather-model and remove upp hack (#2071) Updates the model to the most recent commit of ufs-weather-model. This should allow for the removal of the UPP hack that was added in PR #2042 This required changing nems.configure -> ufs.configure. Resolves #1942 commit 5a2d97e142aa4999b122fd5a130c63e59ea9f8e2 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Thu Nov 16 22:15:53 2023 +0000 Fix check for existence of preamble functions (#2066) A few of the setup scripts were checking for the existence of functions set by the preamble before calling them so they could also be used stand-alone. However, the `type` command returns `1` if the function name does not exist, which will cause the script to die is `set -e` is on. Now the `type` command fails over to an empty string. commit ed2ee7c2b1457b71b271a2c40f0dfa356e0f52f8 Author: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com> Date: Thu Nov 16 16:38:11 2023 -0500 Update UPP products for GFS v17 (#1973) Updates of generating GFS V17 UPP products to support HR3: - Update g2tmpl to 1.0.12 - Add changes to launch cfp on WCOSS2 to generate pgrb2/pgrb2b files - Changes for generating new products (MERRA2, six winter weather variables, 1km HLCY, SDEN) in pgrb2 files Resolves #1965 Resolves #1994 commit 635c4719e603538ce7cccf9ea6b31f3f84f20849 Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Thu Nov 16 20:35:30 2023 +0000 Fix some rocoto dependencies (#2074) A few small errors/cleanup in the dependencies, mostly in fcst: A few small errors/cleanup have crept into the dependencies with recent changes, mostly in fcst: - Fixed the offset, as it would yield a string rocoto doesn't recognize when the interval was 24+ hrs - Removed the duplicate wave dependency. When `waveprep` is included, it depends on `waveinit` so there is no need to add a `waveinit` dependency. - Converted an interval in the archive job that was missed in #2039 Resolves #2075 commit d4c7508260975c6b94fc92fd085f39d4faf3f027 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Wed Nov 15 16:44:03 2023 -0500 Fix missing _PREV in ocean restart file location (#2070) commit 255616d37505c785bdddd5d3e39e8399110b626e Author: mdtoyNOAA <73618848+mdtoyNOAA@users.noreply.github.com> Date: Wed Nov 15 12:02:09 2023 -0700 Update functionality for Prototype HR3 UGWP (#1987) This PR adds/modifies namelist options and activates new 'ccpp' suite definition files for the updated Unified Gravity Wave Physics (UGWP) in the ufs-weather- model recently updated for HR3. The changes to UGWP are the use of the GSL drag suite for orographic gravity wave drag (GWD) and blocking, as well as the new UGWP Version 1 non-stationary GWD. See ufs-community/ufs-weather-model#1923 for details. Resolves #1986 commit be9085e62aae147e3c74602e2f82a99b374fc783 Author: Guillaume Vernieres <guillaume.vernieres@noaa.gov> Date: Wed Nov 15 13:48:58 2023 -0500 Save the required CICE history for the sea-ice DA (#2062) The hist_avg setting of CICE was changed to be an array. commit 85f1f5131ffd70061231304ea477bde0559eb67b Author: Guoqing Ge <guoqing.ge@noaa.gov> Date: Wed Nov 15 11:47:21 2023 -0700 Use assim_freq to configure "offset" in dependencies (#2039) Use the assim_freq from config.base to configure "offset" in dependencies instead of hard-coding them. Resolves #2038 commit 4e3d82ba3a1fa7cdd4443bcd4cf83b2f8835137c Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Nov 15 13:39:14 2023 -0500 Resolve ENKF archive script bugs (#2065) Fix two bugs in the exgdas_enkf_earc.sh script: 1) Replace ARCH_LIST with DATA to match changes done in PR #2000 and update path to generated archive list files. 2) Add status check and exit after script attempts to make tarball on HPSS. Refs #2064 commit 42d7f2f0c48fab898b764e09cfbbd7a9fabbae08 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 14 17:54:29 2023 -0500 Separate tracker and genesis jobs from vrfy job (#2058) This PR creates new individual jobs for the tracker and genesis jobs that are being pulled out of the `vrfy` job (issue #235). The `tracker` and `genesis` jobs will be on by default while the `genesis_fsu` job will be off by default. This mimics the current settings in the `vrfy` job. No enhancements or upgrades are made to the jobs themselves in this PR, only to separate them from the `vrfy` job. However, one change compared to how they currently run in the `vrfy` job is to no longer run the `tracker` in the gdas suite. This mimics how the `ens_tracker` package is run in operations (gfs only). Changes in this PR: 1. Create rocoto job scripts for tracker/genesis jobs. 2. Create configs for tracker/genesis jobs, as well as `config.tropcy` for shared settings. 3. Add tracker/genesis jobs to `config.resources`; use resources from the ecf scripts for `ens_tracker` jobs in operations 4. Add tracker/genesis jobs to rocoto setup for both cycled and forecast-only modes. 5. Update arguments for `jjob_header.sh` script in tracker/genesis JJOB scripts to use specific job names and configs instead of vrfy. 6. Rename `tracker_ver` to `ens_tracker_ver` in version files to mimic variable within tracker package. 7. Rename and move tracker/genesis switches to `config.base`. 8. Remove tracker/genesis jobs from `vrfy` job (`jobs/rocoto/vrfy` and `config.vrfy`). 9. Reduce vrfy job resources to accommodate tasks having been removed. Refs #235 Resolves #1988 Resolves #2048 commit 0a0d6984e094d2a551d5d8331102142e7db13fc2 Author: Rahul Mahajan <aerorahul@users.noreply.github.com> Date: Tue Nov 14 14:08:26 2023 -0500 Enable warm starting of the model for forecast-only mode (#2031) This PR: - adds an option to warm|cold start the ufs-weather-model when setting up an experiment for GFS/GEFS - adds the capability to stage FV3 restarts when the atmosphere is warm started from FV3 restarts. This would be used in the GEFS free-forecast for part of the reforecast capability. - If a coupled model is warm started for the atmosphere, also check if mediator restarts are present. If so, stage mediator restarts to allow restarting the coupled model. Fixes #2016 commit 2cd6a589305a9ac9d3a9a0d2136e66e42f09d3bf Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Nov 14 12:05:20 2023 -0700 Moves UFS WM configuration files to `COM_CONF` (#2054) The UFS weather-model (WM) files are place in the COM_CONF path rather than the respective component model COM history paths. Resolves #2015 commit 6f1693081662f241fafc930b1afc88125f7f5aff Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 14 11:15:02 2023 -0500 Refine fit2obs job in rocoto mesh (#2047) This PR adjusts the `fit2obs` job in the rocoto mesh to better define when it exists and how the archive job dependencies accommodate it not being in the first half cycle. Changes in PR: 1. Remove the `fit2obs` job from the first half cycle `cycledef`. 2. Adjust the archive job dependencies to now include the `fit2obs` job in the new logic check added in PR #1983. The `gdasarch` job in the first half cycle will check if `gdasfit2obs` is complete OR no prior cycle exists. Also cleaned up this new logic check block some to make it a tad simpler. 3. Also, fix the addition of the `fit2obs` config to the config list in setup scripts. Now tied to whether `fit2obs` job is on instead of always adding the config to the list. Resolves #2043 commit 5730a71fa5d311e49d9bb11528b500f27f33d69d Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Tue Nov 14 09:13:11 2023 -0700 Add `waveinit` and `waveprep` to half-cycle. (#2037) This PR addresses issue #1444. The `waveinit` and `waveprep` tasks have been added to the GDAS have cycle. The downstream dependencies for the respective GFS and GDAS forecast tasks have been removed. Resolves #1444 commit 28d2e93c3857de95b0309a089cd7dac736ccaded Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Tue Nov 14 16:11:47 2023 +0000 Update wave IC source for C384 (#2055) The default wave grid for C384 has changed since P8, so a single wave IC on the new grid is available under a different IC name. commit 81dd2d9855091315611106a5afbdaeaa15e6e4ae Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Thu Nov 9 17:19:57 2023 +0000 Fix analysis and post on Orion (#2046) Fixes a couple things to get workflow to work on Orion again: First, while #2042 allowed post to be built, the `upp.x` executable would fail due to a missing library. Now post jobs (temporarily) uses the UPP modules (plus others needed for runtime) instead of the normal workflow runtime module. This should actually fix #2041. This hack can likely be removed once we move to spack-stack. Second, the launcher command for the analysis jobs on Orion are updated to specify the number of CPUs per task. This was necessary as a recent slurm update on Orion discontinued reading that value from the scheduler. Other jobs will be handled later (see #2044). Additionally, a change is made to `module-setup.sh` that will eliminate the annoyance of `gw_setup.sh` breaking tab completion because undefined variable checking was turned on for the script but not back off. Resolves #1996 Resolves #2041 Refs #2044 commit 13d06ded4155cba2d08ef2a2cd553024c5abe29d Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Wed Nov 8 18:25:47 2023 +0000 Hack UPP version (#2042) The stack UPP was using on Orion was recently deleted, leaving us unable to build the UFS verison of UPP there. UPP has an updated version using spack-stack that works, so the checkout script is modified to check out that version of UPP after UFS has been checked out. This temporary hack can be removed once we move to a UFS version that advances the UPP version to or beyond 78f369b. Resolves #2041 commit 20f6eceb8ff58f84174a27eb849c1d74566a3e03 Author: jiandewang <jiande.wang@noaa.gov> Date: Wed Nov 8 11:14:55 2023 -0500 Add basic C1152 settings (#2020) Adding C1152 setting in host.yaml, config.base and config.stage_ic so that can run C1152 S2SW. Resolves #2019 commit 5183c43bbbd07285869feacb49d8680afe85929a Author: Barry Baker <bbakernoaa@users.noreply.github.com> Date: Tue Nov 7 01:14:40 2023 -0500 Update UFS for dust fix and remove nitrates by default (#1989) This PR updates the `ufs-weather-model` to the latest hash that included the dust fix (PR #1922). Along with this I removed the nitrates by default in support of the GEFSv13 EP4 and EP5 experiments. Removed unneeded inputs that should help with speed improvements. commit 34a73cf2ed5afefc776d9cc73b6ebf439122a1bb Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Mon Nov 6 14:00:51 2023 -0500 Reduce gdas builds to 8 #2029 (#2036) Reduce the default number of build jobs for the GDASApp to 8 from 16. This is needed for Orion as the build crashes during a linking step. Though not verified, it appears this may be caused by using too much memory with 16 builds. The issue disappears when using 8 build jobs. Resolves #2029 commit 75269e4bb9764b81589efc7d703825b80e74c8f5 Author: TerrenceMcGuinness-NOAA <terrence.mcguinness@cox.net> Date: Mon Nov 6 17:34:47 2023 +0000 Streamline CI reporting to PRs (#2026) Cleaned up the logs for CI PRs sent to the GitHub Messages: - Eliminates redundant accumulative reporting - Reports on all created or skipped experiment instantiations in a single message - Gives one line report once for each experiment completion - Single final report completion of CI See some examples in forked [PR 195](https://github.com/TerrenceMcGuinness-NOAA/global-workflow/pull/195) Resolves #2007 commit 8d55126bb0b27c79c8bee7f72b014abd34950ff9 Author: Guillaume Vernieres <guillaume.vernieres@noaa.gov> Date: Fri Nov 3 17:06:09 2023 -0400 Implement IAU Cycling Type with Marine Data Assimilation Enabled (#1944) Allows cycling in IAU mode with the S2S UFS model, soca and the GSI. Most of the work related to making IAU work was done by @JessicaMeixner-NOAA . Thanks @JessicaMeixner-NOAA ! Resolves #1943 Refs #1776 commit 2563806821d4ae3b57120bc61aa0575139a708f0 Author: jiandewang <jiande.wang@noaa.gov> Date: Fri Nov 3 11:49:37 2023 -0400 Add two ucx modules in load_ufswm_modules.sh to solve C768 and C1152 S2SW job hanging issue on WCOSS2 (#2021) commit cbdc09711a83493f363a737d1e3e46c48a09719d Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov> Date: Fri Nov 3 04:09:33 2023 +0000 Fix staging of MOM data (#2028) During the update to stage_ic, the copying of the additional res_N files for 0p25 was omitted. These are now properly copied. Resolves #2027 commit bd4c56d99c23c5c41f0bd5f8a980ef99ee160888 Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Thu Nov 2 16:09:59 2023 -0400 changed optional script name vars for ocean analysis (#2025) commit 93bc918cdabee771c182c6f33cc54a20b5bb86c6 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Nov 2 16:01:18 2023 -0400 Create separate GSI monitor jobs and remove from vrfy job (#1983) This PR will move the GSI monitor tasks from the `vrfy` job into their own separate jobs in the rocoto mesh. This takes care of part of issue #235. Changes in this PR: 1. Create new individual GSI monitor jobs in the rocoto mesh to match how it is done in operations. The new jobs are: `gdasverfozn`, `gdasverfrad`, `gdasvminmon`, and `gfsvminmon`. The names correspond to the names in operations and the ecf script names. The jobs are only added to cycled mode, none of the jobs are run in forecast-only mode. 2. Updates to GSI monitor scripts: * Update `ush/jjob_header.sh` arguments in JJOB scripts to call new individual job names and configs. * Introduce `COM_*` variables and use of the `generate_com` utility. This results in the outputs landing in `COM` subfolders, like occurs in operations, instead of landing in the online archive. * Some variable cleanup in JJOB and ush scripts, includes cleaning up usage of `DATA` variable and its removal at the end of the jobs. * Add missing exit statements to `JGFS_ATMOS_VMINMON` and `JGDAS_ATMOS_VERFRAD`. 3. Create new rocoto job scripts for the new individual GSI monitor jobs. 4. Create new configs for the new individual GSI monitor jobs. 5. Add new individual GSI monitor jobs to resource configuration, using the same resources as in operations. 6. Move and rename GSI monitor job switches from `config.vrfy` to `config.base`. Also add switches to setup system. New switches to control each job being added to the rocoto mesh are: `DO_VERFOZN`, `DO_VERFRAD`, `DO_VMINMON` 7. Add GSI monitor job output to archival job and into resulting HPSS tarballs or local tarballs. This now matches what is done in operations. 8. Remove the GSI monitor tasks from the rocoto `vrfy` job and associated `config.vrfy`. Example output locations and files (not showing contents of oznmon/horiz or oznmon/time for brevity, see archival script for full list of output files): ``` kate.friedman@dlogin09:/lfs/h2/emc/ptmp/kate.friedman/comrot/testmonitor2> ll gdas.20211221/00/products/atmos/*mon gdas.20211221/00/products/atmos/minmon: total 112 -rw-r--r-- 1 kate.friedman emc 14030 Oct 25 15:00 2021122100.costs.txt -rw-r--r-- 1 kate.friedman emc 84932 Oct 25 15:00 2021122100.cost_terms.txt -rw-r--r-- 1 kate.friedman emc 808 Oct 25 15:00 2021122100.gnorms.ieee_d -rw-r--r-- 1 kate.friedman emc 808 Oct 25 15:00 2021122100.reduction.ieee_d -rw-r--r-- 1 kate.friedman emc 80 Oct 25 15:00 gnorm_data.txt gdas.20211221/00/products/atmos/oznmon: total 8 drwxr-sr-x 2 kate.friedman emc 4096 Oct 25 15:05 horiz drwxr-sr-x 2 kate.friedman emc 4096 Oct 25 15:05 time gdas.20211221/00/products/atmos/radmon: total 21036 -rw-r--r-- 1 kate.friedman emc 231 Oct 25 15:12 bad_diag.2021122100 -rw-r--r-- 1 kate.friedman emc 9035 Oct 25 15:12 bad_pen.2021122100 -rw-r--r-- 1 kate.friedman emc 1449 Oct 25 15:12 low_count.2021122100 -rw-r--r-- 1 kate.friedman emc 20523403 Oct 25 15:07 radmon_angle.tar.gz -rw-r--r-- 1 kate.friedman emc 217272 Oct 25 15:08 radmon_bcoef.tar.gz -rw-r--r-- 1 kate.friedman emc 502151 Oct 25 15:10 radmon_bcor.tar.gz -rw-r--r-- 1 kate.friedman emc 264480 Oct 25 15:12 radmon_time.tar.gz -rw-r--r-- 1 kate.friedman emc 684 Oct 25 15:12 warning.2021122100 kate.friedman@dlogin09:/lfs/h2/emc/ptmp/kate.friedman/comrot/testmonitor2> ll gfs.20211221/00/products/atmos/minmon/ total 88 -rw-r--r-- 1 kate.friedman emc 10530 Oct 25 14:55 2021122100.costs.txt -rw-r--r-- 1 kate.friedman emc 63882 Oct 25 14:55 2021122100.cost_terms.txt -rw-r--r-- 1 kate.friedman emc 808 Oct 25 14:55 2021122100.gnorms.ieee_d -rw-r--r-- 1 kate.friedman emc 608 Oct 25 14:55 2021122100.reduction.ieee_d -rw-r--r-- 1 kate.friedman emc 80 Oct 25 14:55 gnorm_data.txt ``` Lingering work and considerations: 1. Issue #1925 2. Consider not hardcoding the list of types in archival and perhaps tie it to something reliable or configurable (maybe into `config.verfozn`?): `subtyplist="gome_metop-b omi_aura ompslp_npp ompsnp_n20 ompsnp_npp ompstc8_n20 ompstc8_npp sbuv2_n19"` Resolves #1908 commit 31b05a99b77d0f6eaa8b116485a41a43867d20e1 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Thu Nov 2 12:23:32 2023 -0600 Move analysis post to new stand-alone task (#1979) This PR addresses issue #1130. A new task `postanl.sh` has been added such that the `anl` post-processing is not it's own task within the Rocoto workflow. This change prevents the GDAS experiment from breaking due to failures caused by the `anl` not being available for the first cycle. Resolves #1130 commit 247cdf8c7e10e6c98f782799fc51c069b6474e70 Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Thu Nov 2 11:18:53 2023 -0600 Corrects missing local variable reference (#2023) Fixes missing `$` in variable reference in archive job. Resolves #2022 commit 241742b246da1794646b68e41c3d6fe00b95dd07 Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com> Date: Wed Nov 1 14:19:55 2023 -0400 Updates to prep ocean obs task (#1870) commit 77be0ec6a3117b9f7e71a19c69ac64c09b521ecd Author: Henry R. Winterbottom <49202169+HenryWinterbottom-NOAA@users.noreply.github.com> Date: Wed Nov 1 12:09:33 2023 -0600 No longer write archive lists COM (#2000) Changes the respective `.txt` files used for the HPSS archive to the `DATA` path. Each defined text file has been updated to explicitly write to `DATA` rather than `COM` such that the files are deleted rather than being archived. Resolves #760 commit 517b92f9c20c9e44abba3183325e35a95a7334a5 Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com> Date: Tue Oct 31 16:33:11 2023 -0400 Parallelize the build scripts (#1998) Optimized/parallelized build scripts. A few notes: 1) The default number of build jobs is 20, but one could argue for using 40. When researching this, I looked up what the SRW is compiling with. That system uses 40 cores, which seems a little excessive, but on testing the global workflow, the actual number of cores being used at any given time rarely exceeds 16 when running with 40 cores. This is because the builds tend to use multiple threads in the beginning when compiling low-level modules while the higher-level modules are more or less serial AND because the GDASApp takes several minutes to initialize all of its subrepositories by which time the smaller builds are complete. 2) I also updated checkout.sh so that all checkouts are simultaneous. The CPU load for `git submodule` is quite low, so running 16 instead of 8 jobs at once is not much more expensive. 3) To make this work, I had to add `-j` options to most of the build scripts. The only exception is build_upp, for which the build script within the UPP is hard coded to use 6 cores. 4) I fixed a few small bugs in the build scripts along the way. 5) Lastly, this reduce the total build time from ~2.5 hours for the entire system (including GDAS and GSI in the same build) to ~40 minutes when running with `-j 40`. Resolves #1978 commit 67c050c201f92e8…

KateFriedman-NOAA added 2 commits March 25, 2020 14:58

Issue #21 - add phase 3.5 support

08a5354

- add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files

Issue #21 - updated WCOSS phase 3.5 queues

fb1c79f

KateFriedman-NOAA requested review from Hang-Lei-NOAA and yangfanglin March 25, 2020 16:59

KateFriedman-NOAA self-assigned this Mar 25, 2020

yangfanglin approved these changes Mar 25, 2020

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Hang-Lei-NOAA merged commit 4acc80f into develop Mar 25, 2020

KateFriedman-NOAA deleted the port2wcoss3p5 branch March 25, 2020 20:35

aerorahul reviewed Mar 25, 2020

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zhanglikate pushed a commit to zhanglikate/global-workflow that referenced this pull request Oct 6, 2022

Merge pull request NOAA-EMC#40 from climbfuji/enable_fhcyc_ruclsm

05a5f1f

Enable subsurface cycling (fhcyc) for regression tests using RUC LSM and other GSL physics

TerrenceMcGuinness-NOAA added a commit that referenced this pull request Jun 8, 2023

Merge pull request #40 from TerrenceMcGuinness-NOAA/feature_1643_badges

8099c77

iinvalue input fix for added output need hera action

jderrico-noaa added a commit to jderrico-noaa/global-workflow that referenced this pull request Feb 15, 2024

Merge pull request NOAA-EMC#40 from kayeekayee/gsl_ufs_dev

ebc9e1d

Merge to 2024 Jan 12 NOAA-EMC/develop and update to 2024 Jan 29 UFS

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Issue #21 - Add support for WCOSS phase 3.5 #40

Issue #21 - Add support for WCOSS phase 3.5 #40

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KateFriedman-NOAA commented Mar 26, 2020

Issue #21 - Add support for WCOSS phase 3.5 #40

Issue #21 - Add support for WCOSS phase 3.5 #40

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