Convert checkout.sh to manage_externals #3

KateFriedman-NOAA · 2019-12-17T16:12:39Z

KateFriedman-NOAA · 2019-12-17T16:13:02Z

Example Externals.cfg from prior tests:

# External sub-modules of global-workflow

[NEMSfv3gfs]
tag = nemsfv3gfs_beta_v1.0.18
local_path = sorc/fv3gfs.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/NEMSfv3gfs
protocol = git
required = True

[GSI]
tag = fv3da.v1.0.43
local_path = sorc/gsi.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/ProdGSI
protocol = git
required = True

[EMC_post]
tag = ncep_post.v8.0.27e
local_path = sorc/gfs_post.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/EMC_post
protocol = git
required = True

[UFS_UTILS]
tag = v1.0.0
local_path = sorc/ufs_utils.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/UFS_UTILS
protocol = git
required = True

[EMC_gfs_wafs]
tag = gfs_wafs.v5.0.9
local_path = sorc/gfs_wafs.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/EMC_gfs_wafs
protocol = git
required = True

[externals_description]
schema_version = 1.0.0

KateFriedman-NOAA · 2020-01-13T16:49:31Z

Created new branch off of develop for this work: feature/manage_externals

…Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds.

KateFriedman-NOAA · 2020-01-27T19:11:45Z

Added copy of manage_externals under util folder. Created initial Externals.cfg. Test on Hera worked as intended.

Did a little house-keeping and removed scripts/files associated with prod_util and grib_util builds which are no longer supported. Also introduced .gitignore file to make things cleaner.

…md file

KateFriedman-NOAA · 2020-01-28T15:26:00Z

Removed copy of manage_externals from branch, will installed on supported platforms. Introduced README.md to document dependency on manage_externals for public users.

Sync merged feature/manage_externals with develop branch.

KateFriedman-NOAA · 2020-02-06T15:52:16Z

Installed manic-v1.1.6 tag on Hera:

/scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.6

...and on WCOSS-Dell (Venus and Mars):

/gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6

...and on WCOSS-Cray (Surge and Luna):

/gpfs/hps3/emc/global/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6

KateFriedman-NOAA · 2020-02-06T16:04:15Z

Tested branch checkout using new manage_externals install on Hera (worked nicely):

-bash-4.2$ /scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

-bash-4.2$

KateFriedman-NOAA · 2020-02-06T16:17:37Z

Test on Luna received this error:

LUNA-llogin1 > /gpfs/hps3/emc/global/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, ERROR:root:Command '[u'git', u'clone', u'--quiet', u'ssh://vlab.ncep.noaa.gov:29418/NEMSfv3gfs', u'fv3gfs.fd']' returned non-zero exit status 128
ERROR:root:Failed with output:
    fatal: ssh variant 'simple' does not support setting port

ERROR: In directory
    /gpfs/hps3/emc/global/noscrub/Kate.Friedman/git/feature-manage_externals/sorc
Process did not run successfully; returned status 128:
    git clone --quiet ssh://vlab.ncep.noaa.gov:29418/NEMSfv3gfs fv3gfs.fd
See above for output from failed command.

Issue resolved by adjusting git config ssh setting:

git config --global ssh.variant ssh

Will need to add a note about this to wiki section for checkout.

Test checkout worked well using newly install manage_externals tag on Luna:

LUNA-llogin1 > /gpfs/hps3/emc/global/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

LUNA-llogin1 >

Same error, fix, and then successful test on Surge.

KateFriedman-NOAA · 2020-02-06T16:25:12Z

Successful test on Mars and Venus:

[Kate.Friedman@m71a2 feature-manage_externals]$ /gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

[Kate.Friedman@m71a2 feature-manage_externals]$

Note: emc_gfs_wafs not checked out since it is set as optional.

KateFriedman-NOAA · 2020-02-13T21:07:59Z

Tested feature/manage_externals branch on Hera after sync merging with the develop branch. Got to see a typical Hera error in action (frequent connection issues with GitHub):

-bash-4.2$ /scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ERROR:root:Command '[u'git', u'fetch', u'--quiet', u'--tags', 'origin']' returned non-zero exit status 128
ERROR:root:Failed with output:
    fatal: unable to access 'https://github.com/NOAA-EMC/EMC_post.git/': Failed connect to github.com:443; Connection timed out

ERROR: In directory
    /scratch1/NCEPDEV/global/Kate.Friedman/git/feature-manage-externals/sorc/gfs_post.fd
Process did not run successfully; returned status 128:
    git fetch --quiet --tags origin
See above for output from failed command.

ERROR:root:Failed with output:
    fatal: unable to access 'https://github.com/NOAA-EMC/EMC_post.git/': Failed connect to github.com:443; Connection timed out

ERROR: In directory
    /scratch1/NCEPDEV/global/Kate.Friedman/git/feature-manage-externals/sorc/gfs_post.fd
Process did not run successfully; returned status 128:
    git fetch --quiet --tags origin
See above for output from failed command.


ERROR: Failed with output:
    fatal: unable to access 'https://github.com/NOAA-EMC/EMC_post.git/': Failed connect to github.com:443; Connection timed out

ERROR: In directory
    /scratch1/NCEPDEV/global/Kate.Friedman/git/feature-manage-externals/sorc/gfs_post.fd
Process did not run successfully; returned status 128:
    git fetch --quiet --tags origin
See above for output from failed command.

A retry a minute later was successful (no GitHub connection issues) and allowed me to see it checking the components already checked out before proceeding to the others:

-bash-4.2$ /scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

-bash-4.2$

KateFriedman-NOAA · 2020-02-14T15:55:12Z

Tests using the manic-v1.1.6 tag failed (sub-modules not checked out for fv3gfs and gsi), that tag does not include fixes made later (which were in master copy used for initial testing). Switched to later manic-v1.1.7 and it worked. Installed manic-v1.1.7 on machines and removed manic-v1.1.6.

Will update checklist above for new tag.

KateFriedman-NOAA · 2020-02-14T16:59:52Z

Example of what it looks like when cloning on Hera hangs (as it often does sadly, especially with the GSI checkout which is huge):

-bash-4.2$ /scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.7/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi,

Command 'git submodule update --init --recursive'
from directory /scratch1/NCEPDEV/global/Kate.Friedman/git/feature-manage-externals/sorc/gsi.fd
has taken 300 seconds. It may be hanging.

The command will continue to run, but you may want to abort
manage_externals with ^C and investigate. A possible cause of hangs is
when svn or git require authentication to access a private
repository. On some systems, svn and git requests for authentication
information will not be displayed to the user. In this case, the program
will appear to hang. Ensure you can run svn and git manually and access
all repositories without entering your authentication information.


emc_verif-global,

-bash-4.2$

I let it keep doing its thing and manage_externals kept trying to clone GSI and then when successful it moved on to the final checkout (emc_verif-global).

What a good (hang-free) checkout looks like on Mars:

[Kate.Friedman@m72a1 feature-manage_externals]$ /gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/manage_externals/manic-v1.1.7/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

[Kate.Friedman@m72a1 feature-manage_externals]$

…th develop

KateFriedman-NOAA · 2020-03-06T15:23:53Z

Sync merged with develop branch and then updated EMC_verif-global tag in externals config.

New manage_externals version released on Tuesday (manic-v1.1.8). Have installed on supported platforms and will now test and update README if good.

KateFriedman-NOAA · 2020-03-06T16:12:29Z

Test of new manic_v1.1.8 tag was successful on Venus:

[Kate.Friedman@v72a2 feature-manage_externals]$ /gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/manage_externals/manic-v1.1.8/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

[Kate.Friedman@v72a2 feature-manage_externals]$ git status
On branch feature/manage_externals
Your branch is up-to-date with 'origin/feature/manage_externals'.

nothing to commit, working tree clean
[Kate.Friedman@v72a2 feature-manage_externals]$ cd sorc/
[Kate.Friedman@v72a2 sorc]$ ls -ltr
total 11296
...
drwxr-sr-x 17 Kate.Friedman emcmodel  2048 Mar  6 15:25 fv3gfs.fd
drwxr-sr-x 11 Kate.Friedman emcmodel  2048 Mar  6 15:26 gfs_post.fd
drwxr-sr-x 11 Kate.Friedman emcmodel   512 Mar  6 15:26 ufs_utils.fd
drwxr-sr-x 15 Kate.Friedman emcmodel  2048 Mar  6 15:27 gsi.fd
drwxr-sr-x  9 Kate.Friedman emcmodel   512 Mar  6 15:30 verif-global.fd

Test of build_all.sh after running manage_externals was successful:

[Kate.Friedman@v72a2 sorc]$ sh build_all.sh
Creating logs folder
Creating ../exec folder
 .... Building fv3 ....
 .... Building gsi ....
 .... Building ncep_post ....
 .... Building ufs_utils ....
 .... Building gaussian_sfcanl and nst_tf_chg ....
 .... Building enkf_chgres_recenter ....
 .... Building tropcy_NEMS ....
 .... Building gdas ....
 .... Building gfs_fbwndgfs ....
 .... Building gfs_overpdtg2 ....
 .... Building gfs_wintemv ....
 .... Building gfs_bufrsnd ....
 .... Building fv3nc2nemsio ....
 .... Building regrid_nemsio ....
 .... Building gfs_util ....
 .... prod_util build not currently supported ....
 .... grib_util build not currently supported ....

 .... Build system finished ....
[Kate.Friedman@v72a2 sorc]$

Will proceed with updating README to reflect new manic version.

KateFriedman-NOAA · 2020-03-06T16:29:10Z

Ran link script after build and noticed wafs links were broken throughout which is understandable since manage_externals didn't check it out since wafs is optional. Updated link_fv3gfs.sh to only make wafs links if sorc/gfs_wafs.fd folder exists. Removed machine dependency on wafs links.

KateFriedman-NOAA · 2020-03-06T16:33:13Z

Updated README with new manic version.

This is ready for a PR. Will initiate PR and ask for reviewers to test.

KateFriedman-NOAA · 2020-03-06T16:54:33Z

Initiated PR #29

… removed elsewhere already

…in README and blurb about this replacing checkout.sh

KateFriedman-NOAA · 2020-03-11T15:57:58Z

Received initial buy-in from NCO (email with Steven Earle). No requirement to keep checkout.sh but will keep during transition period. Proceeding with commit (PR #29).

Issue #3 - Introduce manage_externals as replacement for checkout.sh

KateFriedman-NOAA · 2020-03-11T16:02:20Z

Completed PR #29. Need to work on setting up modules.

Squashed commit of the following: commit 586d0994aab2348c1deea521b37183ddf0a8f2d7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 19 14:01:16 2020 +0000 Issue #1 - update EMC_verif-global to tag verif_global_v1.6.0 in Externals.cfg commit f412f2ca8071baa6bd91f641c1fd8102e9271bef Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 19 13:53:34 2020 +0000 Issue #1: update EMC_verif-global to tag verif_global_v1.6.0 commit 94abe6a1caca4724fbc580d58928a6cf74a65590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 18 19:02:09 2020 +0000 Fix syntax error in setup_workflow_fcstonly.py commit 06ff92be074bac2728055a62ce0fa263a4d13cf6 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:37 2020 +0000 modify job card for tests commit a2b76f1d402c8568612dc727ebf36b548748589d Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:04 2020 +0000 modify namsnd TIMSTN commit 81bc3fc4090c4fd3bdec070abd9c117d5a09491d Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:09:24 2020 +0000 modify collectives mpmd design commit 9cbf9be8ea2a959a6711c10838ba46347451b7d1 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:08:41 2020 +0000 modify config.resources for postsnd number of tasks commit e3945e03031db23dbb8681e3d1034cc07377ae2d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:38:07 2020 +0000 Issue #1: add logic to check WAVE_CDUMP prior to setting npe_fcst_gfs commit 6fdc6365fa13c77f01ae0cdb82e74bbbd149f914 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:35:14 2020 +0000 Issue #1: DA workflow updates for GFS v16 (does not change results) commit 91610f80cef8911ac6aaae2ded67a95b4ff1d061 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:25:36 2020 +0000 Issue #1: update Externals.cfg to GFS v16 components commit 7dcf23281cddb9aabc20c73ec077a9a52ded56b8 Merge: 55130516 057b2a82 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:21:33 2020 +0000 Issue #1: Merge branch 'develop' at 057b2a8 into feature/gfsv16b commit 057b2a82fa43f7bc36c3e757ca7d48fb86b9541c Merge: 0377d20f 622167d5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 11 12:00:58 2020 -0400 Merge pull request #29 from NOAA-EMC/feature/manage_externals Issue #3 - Introduce manage_externals as replacement for checkout.sh commit 55130516cea5ea67b758b52c9445aca667e1c35a Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 9 13:59:44 2020 +0000 Add ability to have wave jobs depending on cdump commit 622167d5fb3322921a1702639ebccb42da1f5e1b Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 18:20:31 2020 +0000 Issue #3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh commit e83b90d50999f64ed5208d94a8cceb8179c9395f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 17:00:15 2020 +0000 Issue #3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already commit 8699b46aa1797e8dd29edff1d4bd3b511ad5cb1c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:30:54 2020 +0000 Issue #3 - updated README with new manic version commit e602cd3d536b55b86b04285aedd5781d8d3a9f82 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:27:57 2020 +0000 Issue #3 - updated link_fv3gfs.sh to adjust wafs links commit 830c73f430d70cc516dea419a8969c6fd9fc0910 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:21:45 2020 +0000 Issue #3 - update EMC_verif-global tag in Externals.cfg after sync with develop commit 40084e67810d21366d0e9af6d9937c29aa4965ad Merge: f662fffa 0377d20f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:18:52 2020 +0000 Issue #3 - Merge branch 'develop' into feature/manage_externals commit cfa5be4b414f67efa8eb17c8fe5060fe94cd48ea Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 14:05:29 2020 +0000 Issue #1 - remove gfswave restart archival commit 85b3a1d24e89c60e9977ecc549656a0145caeb8b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:51:22 2020 +0000 Issue #1: update postsnd section of config.resources commit 6c8dc92953e5c003882ffbb8376a8b1b2c8668d2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:40:38 2020 +0000 Issue #1: update config files to be consistent with settings in pre-implementation GFS v16 real-time and retrospective parallels * parm/config/config.anal - reduce second outer loop iteration count for gfs * parm/config/config.epos - add ENKF_SPREAD to toggle on/YES or off/NO generation of ensemble spread files * parm/config/config.fcst - set adjust_dry_mass for GDAS (true) and GFS (false) * parm/config/config.fv3 - remove nth_efcs, set C384 nth_fv3=1 * parm/config/config.resources - set nth_efcs to nth_fv3 (default 2) commit a107109d8fdd0292a3017f26e56863fbb28a63ce Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 16:08:23 2020 +0000 Fixed bug in config.fcst related to extra then commit 0de559a088ac670f2b105168988c18ee1b57488a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:55:50 2020 +0000 Issue #1: update exglobal_fcst_nemsfv3gfs.sh and checkout.sh * scripts/exglobal_fcst_nemsfv3gfs.sh - turn on adjust_dry_mass with dry_mass=98320.0, turn off iau_drymassfixer * sorc/checkout.sh - update to model tag GFS.v16.0.1 commit ce23e52730a9f6fe20215cb47563dd6f2dcb254a Merge: fa7bca5a 0377d20f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:36:50 2020 +0000 Issue #1: Merge branch 'develop' at 0377d20 into feature/gfsv16b commit 0377d20f3d019f77a47fc9860d6146fd3c8e5d94 Merge: 1b359dbe 25524675 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:43:16 2020 -0500 Merge pull request #28 from NOAA-EMC/feature/metplus2 Issue #8 - add switch for MET+ jobs commit 25524675a63e59829655bbd9a09abc4dca246357 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:31:02 2020 +0000 Issue #8 - add switch for MET+ jobs commit fa7bca5a5fb26886219190e9e5e5d6efb9f9ddab Merge: af73a39f cd67f975 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:08:57 2020 -0500 Merge pull request #25 from NOAA-EMC/feature/wave2global Feature/wave2global into feature/gfsv16b commit cd67f97592227fea0238327dade887d4584300c3 Merge: c72d7b5b af73a39f Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:03:10 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit c72d7b5bca4a67e83916edd17fb0e5c4612a7867 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Mar 4 23:53:41 2020 -0500 Clean up exwave_post_sbs commit 2e738f20930dfd7d5216920ec7cc26774be811f3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Mar 5 04:03:44 2020 +0000 Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh. commit b7638436b1e737077fbb2dad705e7ed157df261e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 21:02:04 2020 +0000 Fix to JWAVE_PREP to look back a day for rtofs commit 33cf0fc0f2a5d3b3ca749c9941835398f94e7606 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 19:59:56 2020 +0000 Adjustments after going through PR review commit 1b359dbeb31b94382619dfc9c67e77fffe46aaa0 Merge: 0359d342 31bb7d32 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 10:19:36 2020 -0500 Merge pull request #26 from NOAA-EMC/feature/metplus Feature/metplus - refactored MET+ jobs to resolve timing issues commit 5c8fa3dd2666b7fd90b473fb12629016ef402e3e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 13:03:12 2020 +0000 Adjust restart_interval if-blocks for DOIAU=YES in configs commit 2b337a8f8c900146905915032826faf9e6f07dc0 Merge: a4daafee e0a1a0ae Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:31:09 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit a4daafeecaf3fed38e637389ab5f4041b5139a4c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:30:58 2020 +0000 Adjustment to waveprep resources to match numbger of rtofs files, bugfix on generation of ascii spectral data commit e0a1a0aeb4066ab834fd93a86780196f55a7a447 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 18:45:50 2020 +0000 Fix gdasfcst dep on gldas commit 817f8faa6b0c71ef970da302d6e46b57c9ea8129 Merge: 48ed4c5f 203d1747 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 13:41:13 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 48ed4c5f4a6b0093941a97d475abdb6bed2937e5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Mar 2 04:22:02 2020 +0000 General cleanup. wavepostsbs wall time limit matches gfsfcst walltime . commit 4af83a430a8bb58f83d686535d39d9745de9ab6c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Mar 1 02:51:02 2020 +0000 Cleaning up prior to merging to gfsv16b commit 14f52dd35b7d6a1a9b98cff0da2426015cfabd3d Merge: 4400d7c3 d39ba74d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:17 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 4400d7c3e5e26bacc0ba892ef3178d4d906d57a8 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:13 2020 +0000 Changes to feal with waveprep and wavepost commit d39ba74d71b5bd5c510eb32cac17facdbe5a9a49 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 19:01:02 2020 +0000 Removed extra forward slashes in wave part of hpssarch_gen.sh commit 82889365da44196804b7d751a1c8c5992ca102ea Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 18:44:13 2020 +0000 Added waves to archival commit a8f4200d04d7c49a1ff1cd443f1f36fd949cb5db Merge: 9321bdc9 8997f2a2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:58:28 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 9321bdc9a5a85a4b458b3539bb4f15bdcbf2cf33 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:39:34 2020 +0000 Cleanup and added adjustments to other env files commit 67e20de5ac6e8f52312bc71adc5419330ebe6542 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 04:22:36 2020 +0000 Adding current smoothing flag to config.wave. Previous push alos contained changes to reflect improved wave model physics. commit 10164bdae0fdc53a604dc8e58b2a6a5fce5ebc99 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 03:47:36 2020 +0000 Adjustments to use gfs/gdas seaice file instead of omb file. Changes to intake rtofs 1hr files when available. commit 7145fd01ffcf3043dd1dea458ae866f208f32633 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 19:34:24 2020 +0000 Modify prep.sh to create rtofs symlink in ROTDIR if DO_WAVE=YES commit 5ac8c8683b6f3de8cc586bae8d3825b2bd67011c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 18:44:45 2020 +0000 Fix for missing nth_postsnd in config.resources commit 011a393c162a422859b1184e9f32dd50d1d48882 Merge: d01c3543 8806c9e4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 26 13:50:49 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit d01c3543e59bbabb491454788f17e818305de6fc Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:48:26 2020 +0000 Updates to checkout.sh from feature/gfsv16b commit 3b5d451aa165dc368c674cd2a71d6786097869e7 Merge: 88d8abda 318d8b46 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:43:52 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 88d8abda4adf3c945b1c5526dfca6b1774b91f3b Merge: 33c65a19 9d6e8464 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 25 17:49:29 2020 +0000 Sync merge with feature/gfsv16b commit 33c65a19cbe68342cd9ab3f434a22a399be3a1b4 Merge: 9a1f79d7 0aa8dacf Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Feb 24 15:37:48 2020 +0000 Bugfix for creating spectra files in wavepostsbs step commit 0aa8dacfeef3fd1bf3abe368c9cdaf9a16b57cde Merge: 8148766c 431c7866 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:57:55 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 8148766c489057553e20fc42bad494f1ed5aa70c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:56:56 2020 +0000 Small fix to exglobal_fcst_nemsfv3gfs.sh commit ebf02b19f98f90ae3c8bc57cc5c2325260aaab0a Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 20 14:05:52 2020 +0000 Remove output_1st_tstep_rst override and add iau_drymassfixer commit 36cb42dc5d8985f8402405dce811f04063f572ab Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:30:28 2020 +0000 Removing references to gens/gefs from exglobal_fcst_fcst_nemsfv3gfs.sh in preparation for merge back to gfsv16b commit 9a1f79d7aa0343ea95d1af419f55a2d0d356e99d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:19:11 2020 +0000 Adding back lost and found EOF in section that creates input.nml commit 635d95d58c932909dc6a29c62515c385dc01587a Merge: f31de5aa c4454b3a Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:42:49 2020 +0000 Additional sync merge with feature/gfsv16b today commit f31de5aaa6c915ac8bc1184726bead71dc9157d4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:18:23 2020 +0000 Removing copies of exglobal_fcst that were added erroneously commit 31bb7d32181ca84229c3c3374226bbd37784ddc4 Merge: eb73e520 0359d342 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed Feb 19 15:24:42 2020 +0000 Merge branch 'develop' into feature/metplus commit e058a9054d7edb2b92ee590b6dede733fe4bc4a3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 15:05:59 2020 +0000 Changes to config.resources after wave tests commit 24844e403745fb5b292fcde0aae53a3c497aa295 Merge: 0f2f2b0b c2e99795 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 14:03:58 2020 +0000 Sync merge with feature/gfsv16b commit 0f2f2b0be1ff97485a23cdaf214d428927290c3d Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 13:36:14 2020 +0000 Updates to config.wave and scripts/exwave_post_sbs.sh commit 958ee38b6fb9c76056a3045f43dec92a503f48c9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 20:38:53 2020 +0000 Increasing resources for eupd when C384 commit f662fffa25a99617828e4322bf789978cf523248 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:57:05 2020 +0000 Issue #3 - Updated README with new manic tag v1.1.7 commit 94cd971fb14c4b7204822ca780d6e9dbe945b595 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:31:32 2020 +0000 Updates to wave scripts commit e3196a84a0ecd2b54d59abfdc9184622a9c605ca Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 13 15:59:06 2020 -0500 Update README.md commit e46b175d8a309010e421ccd54e6d6eb083af3579 Merge: 4bd0e203 0359d342 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 20:38:04 2020 +0000 Issue #3 - sync merge with develop branch commit aec4c288e1f96ee7f3f2a834014edde0ef4ea9a2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 19:09:56 2020 +0000 Added EUPD_CYC variable to config.base.emc.dyn commit 2a2a8d3fe1fcd0bebf07d34c32697f64f5ac745c Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 18:00:14 2020 +0000 Adjusting config.resources for C384 commit 8bdf2387b1fad22cfa2da37a7428406a847d2362 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 17:33:53 2020 +0000 Reducing npe_eobs from 400 to 100 commit c48ac6df8c5c166a1ef51b173372f3f26f9d877a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 14:46:26 2020 +0000 Removing gefs from checkout.sh and link_fv3gfs.sh commit 78a7294eb1937758fa81f72cc5045d3d680a07c6 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:29:15 2020 +0000 Fixed missing fi in checkout.sh commit 15628bda0621187949204d0d9af4d901e205495d Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:21:39 2020 +0000 Change fv3gfs checkout to develop branch of ufs-weather-model commit 631820beca07522faedccc47d7415c4b6b250273 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:08:30 2020 +0000 Changing checkout.sh to Henrique's fork branch gfsv16_wave commit a518485866536102312c477926ae42a59d5e561e Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 17:02:22 2020 +0000 Changing fv3gfs.fd checkout back to gfsv16_updates commit c75d35b6802592b17640fecace38d9103a14b1bc Merge: 2a46ee2e ba63c4f8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 16:44:53 2020 +0000 Sync merge with feature/gfsv16b commit 2a46ee2ee71da5c75d11cbc96b048a1e34148239 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 15:42:35 2020 +0000 Updates for wave and fcst scripts, as well as config.wave commit eb73e520716215c3f11cc4cdfce3831408221766 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Feb 7 14:04:37 2020 +0000 Update EMC_verif-global checkout to verif_global_v1.5.0 commit 85deaf78b86184f9b52afe5d68b370ba640c152b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 19:16:18 2020 +0000 Updated resource configs based on C384 and C768 tests commit 4bd0e20300cc2a79e79433b2ec8cdb15c8f01c9e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 11:55:31 2020 -0500 Update README.md commit d9ea1acab54f65a987b32d56587dfd1b6bcd037c Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 6 16:03:11 2020 +0000 Issue #3 - reduce hashes down to minimum 8 characters commit 17bcdf2a1e0e8f1febfc6d57994a12ac625d9d75 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 4 19:11:42 2020 +0000 Wave changes for running with IAU on commit 50b70215096dbc87e0484ed0eea9572238c37432 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 30 14:55:48 2020 +0000 Resource adjustments and fix for restart copying in exglobal commit 85b254d8e65318adaeef87ae7187218de59f94c5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 21:18:35 2020 +0000 Adjusting resources for wave component commit 3f858be34da7134a071762376f4c4e69ea73f4a0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:43:02 2020 +0000 Further adjustment to config.efcs for restart_interval for cold start SDATE commit a674d30c8fe1da53c2d8bda5b695a474e8906f6b Merge: 9944f2fe 3fda3e35 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:26:10 2020 +0000 Merge branch 'feature/wave2global' of https://github.com/NOAA-EMC/global-workflow into feature/wave2global commit 9944f2fe15576f0b401996fefe3c910888708e0d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:25:59 2020 +0000 Resource adjustments for C384, restart_interval adjustment for cold start, and fcst dependency update commit b64fd5ff43f88bd5f2d27b0a16fb803eac8aff8c Merge: cf008631 3ed9267b Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:24:37 2020 +0000 Merge branch 'develop' into feature/manage_externals commit cf0086311daaf62ee33df010946d0a0ddc5bc400 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:23:14 2020 +0000 Issue #3 - remove copy of manage_externals under util and add README.md file commit 3fda3e359f66611c77a97ca9c30a6204a36077c3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 14:18:47 2020 +0000 Adjusting output stride on station outputs, adding bulletin output to wavepostsbs using unified wave_outp_spec.sh (removing wave_outp_bull.sh), adjusting wave resources in config.fv3 commit e4bd7d09ef3cc06d14dbfcb07bd3f211d4a5e54c Merge: 99b19f18 b3d88593 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:58:16 2020 +0000 Sync merge with feature/gfsv16b commit 99b19f18e0a01fcf49b442ec66f1aea43b16433c Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:54:46 2020 +0000 Disabling additional wave jobs for later implementation commit bfc7bb0b237d4cf4240551aa8b9c5d025724ac16 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jan 27 19:06:17 2020 +0000 Issue #3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds. commit e216205aec6f481b4e96c8707d485dd2eacfb0e7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Jan 27 00:01:14 2020 +0000 Updating resource config in config.fv3 for running cplwav in c384 with ppn=7,thrd=4; checkout.sh now points to the latest ufs-weather-model develop branch; updated fv3gfs_build.cfg to match ufs-weather-model commit 786806f3cd5d858615f3f74dec78891a2189ee79 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 15:04:16 2020 +0000 Missed file format updates in a few places in config.metp commit c11dfef0f7fb8da2866e6a022ac0ff60044766a7 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 14:07:29 2020 +0000 Update EMC_verif-global tag to verif_global_v1.4.1 commit df2e6b0bd9a2af2107a78c12f9c648a61fe0d5b9 Merge: bc07de02 09e68b48 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 20:00:34 2020 +0000 Sync merge with feature/gfsv16b commit bc07de02af5743194cb9203d0d36e62e9a25b223 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 19:43:12 2020 +0000 Fixed wavepostsbs dependencies commit 4b54c37b425c947e79c4ddc192a6e2f06b8528fa Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 15:04:20 2020 +0000 Turn off cplwav in efcs config and adjusted dependencies for fcst job commit 0ea809c208ce606c957eed4d346a3828d8186010 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jan 23 13:29:56 2020 +0000 Update file format variable in config.metp of online archive files commit b886c848a60871a86bb0b45d024a34368ad1d898 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 22 21:01:34 2020 +0000 Change to base config and update to wave dependencies commit 154b118a7808bfa60abe0620e4bee21cb4faabee Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 22 03:37:24 2020 +0000 Changing WAV_MOD_ID to MDC (model component) tag; updating some paths for wave components in several scripts. Correcting wave_tar bug. commit 0edcb211586f1f96d01f172215568fa7eee3a7a2 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 21 20:15:14 2020 +0000 Several changes to change the sirectory name from to etc. Updates to wavepostsbs. commit c0d7179f34837e40db9ccb1b941ad9f312283a6e Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:37:16 2020 +0000 Add updated env machine files for gfsmetp commit 82e690717d72c7b021c637270108f4bacfb6816d Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:29:23 2020 +0000 Update config.resources for gfsmetp commit 72e8adf1c8a8859786cbbcf1b976640d73c5c867 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:19:31 2020 +0000 Update EMC_verif-global tag checkout to 1.4.0 commit 6872f79f3f9052377ff863da1bbac482548ee0ce Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:14:25 2020 +0000 Add rocoto METplus job script commit 9c94156670bd810561bd2a699648afb946511ea9 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:09:13 2020 +0000 Changes to setup_workflow.py for gfsmetp metatask commit 0ad851882686087fdd21a4a8f88b65dd3960cd1c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 17 17:29:09 2020 +0000 ACCOUNT fix in config.base.emc.dyn and dependency fix to setup_workflow.py commit 80f13fb4b785fbde8e925cfb6deb547297f34e70 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:29:35 2020 +0000 Removing underscore from COM wave directory names commit 39a9df9385631df4a3cba4e6663fc6ab5c3f238d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:08:41 2020 +0000 Changing back waveprep to include ice and currents by default commit c36df4d748bbc2a8dc7b4a044a1f62f637e3ba33 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jan 16 19:43:26 2020 +0000 Updating post sbs script to copy station files to correct directory. commit f1cd7ab43d24fc576c82ea227cd7d79cc08f4835 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:48:11 2020 +0000 Adding block sourcing config files into wave j-jobs commit b736f8315497bfc29fd77faa9d98bf558ddea919 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:40:16 2020 +0000 Removed config sourcing from rocoto job scripts commit 4f6840b25d85152ea7393a8959619bb4caab9d67 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:38:41 2020 +0000 Removing dependency on log file for wave post sbs commit 429c409799f1999babbfb3653e6f03be66f8fec3 Merge: 3f685fd3 a6905174 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:35:24 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 3f685fd3423add0ba2cfb7c3115a674891c44e55 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:29:58 2020 +0000 Reinstating Ratkos NO NO in build_fv3.sh commit a69051742c5edd0e4d34d178329fc24cacede78a Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:12:20 2020 +0000 Adding supplemental config source to JGLOBAL_FORECAST for wave commit 1f5c593705df384608b1f1dd84df9114d5d8a812 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:59:27 2020 +0000 Removing KEEPDATA from JWAVE_POST_SBS commit baa06afcecef64faad51bfac3b4fd2c064df3fb5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:32:06 2020 +0000 Changes to update sbs post and reconciling parameters for output post data. commit 1915aa921dfe2ef17799599e5a3084547caa3ca2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 10 18:36:32 2020 +0000 Issue #8 - pulled in config.metp and modifications to two setup scripts commit 784fb65dee27135340771b1c778d1d69219ba05c Merge: 9562fc71 7440aad1 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 27 05:01:12 2019 +0000 Merging latest feature/gfsv16b branch into wave2global commit 9562fc71eb80e33f4d132dd9ad9ca5903be1435f Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 27 04:47:20 2019 +0000 Adjusting resources and env for running C384 coupled commit 5ce0bdf026c4c9a4a62252a264816710558dfd20 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 26 19:00:42 2019 +0000 Changes to support wave side by side post commit 07d9ec5aa1e54e9b78ee1e18b0fa0d984f129bea Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Dec 22 17:55:13 2019 +0000 Temporary changes to work with updated WW3 code under GEFS_v12 and to bugfix wave_post_sbs. commit a69df4b414f5247a9db24ddebb42bc409f26d090 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 20 12:58:02 2019 +0000 Additional changes to have wave init, prep, postsbs handed over for experiments by gfsv16 group commit 46aa4bae69f1a9a73965b863557cd359161ff7d6 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Dec 17 21:02:05 2019 +0000 Adding resource adjustments to allow fcst step to run the couple FV3-WW3 system. Adding the WAV_POST_SBS job, modifying waveprep to use new unified point output grid tag uoutpGRD commit b8cff19a2cea88b1f73e0828f9c47b6b85f20ceb Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Dec 16 06:13:26 2019 +0000 Fixing issues with waveinit and waveprep and attempting to run gdasfcst. commit bcfcd23cc11644dc138b1d4aa19ad22a3c3de53c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 13 20:31:18 2019 +0000 Added additional wave jobs to setup scripts commit 290bc09e17bb41ce94f4a98c7e942a0e67757093 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 13 19:04:38 2019 +0000 Adding files for additional wave jobs commit 23ea303716477284c74b187d4142f40c4f4a2e1b Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 12 05:19:27 2019 +0000 Updating build_fv3.sh to add correctly ww3 compile options commit 212aeb449300a0795d8d0055ab6f12f39bfc4d98 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 12 02:58:50 2019 +0000 Adding WW3 as component in the gfsv16 for enabling coupled run. commit 6e450a8947967795a9fab9da2b5ebc4d415c0387 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 12 02:51:08 2019 +0000 Changes to make wave init functional end-to-end under GFSv16 workflow. Removing parm/wave directory (to be moved to GEFS repo, in GFSv16 parm were converted to config) commit c4b7e07b355b9e92a8070659210cfd95961a1b05 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 11 15:01:28 2019 +0000 Added wave tasks to free-forecast mode and adjusted cycled mode dependencies commit e36fed5ffaed435a2d774fa859b0aebd62de149b Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Dec 11 13:27:52 2019 +0000 Modifying spec of unified output point parameter from buoy to uoutpGRD to avoid errors as parameter buoy is also used to label output points themselves commit 126bd34442e34862da1ac1eaf00a2d9903cdd595 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Dec 10 18:44:27 2019 +0000 Partial changes to add side-by-side post commit 66add7f33225e5bef12c941fd27b9c0539b155df Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 10 17:18:00 2019 +0000 Added wave rocoto job scripts, configs, and setup criteria commit b6a2742ebdce9e522a9b6f5af77d3f8a379c8413 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Dec 9 16:36:20 2019 +0000 Adding changes to ensure RTOFS current files are read and prepared for coupled GFS runs. Several changes to add side-by-side post. commit 9d447f9363e999d5a7f5ff337c68a225a137bad9 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 6 20:48:56 2019 +0000 Reconciling exglobal_fcst, checkout and link scripts to allow running both GFS and GEFS configs. Adding ability to link out_grd/pnt wave files to COMOUTWW3 commit db1d3be780e8bcee8ac1352d5d8fe4b604d330f9 Merge: 25e423bd 37a3bd27 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 6 15:51:10 2019 +0000 Merging feature/gfsv16b 37a3bd27 into feature/wave2global commit 25e423bd5c804c73b2f9ba12ed3c29d4d2e13abd Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 5 19:50:43 2019 +0000 Cleaning up (changing wavemodTAG to WAV_MOD_TAG etc) commit eb2197553c83c8c2c7b8233781fa8caac2bf7fe7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 5 05:58:01 2019 +0000 Adjustments to adding stats step commit ed084df89006436392777bdce7502b426c505a8c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Dec 2 16:05:53 2019 +0000 Changes made to file names to adjust to wave scripts ported to global-workflow commit 49d7b118c6ee980ad2c3e1e5d8e960926fe5cc1f Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Nov 27 17:09:34 2019 +0000 Saving changes to add gwes POST to global-workflow commit f70a299d03e1c5c902a5b6c65514a2509e72ea82 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Nov 21 02:29:45 2019 +0000 Modified wave PREP step config files for accommodating move of wave j-jobs, ex/ush scripts, fix_wave and parm files into the global-workflow structure. Changed COMICE to COMINice in wave scripts. Renamed ush scripts for direct lreationship to WW3 package program names (eg ww3_prnc) commit 248fd28a4603d23b1ff1ee353e0c521ea36041d5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Nov 19 22:46:04 2019 +0000 Adding changes that make INIT step functional for GEFS after merging wave j-jobs, ex/ush-scripts, parm, fix into global-workflow commit 79c318ddd22a52f9340808c9d9768b866dc39880 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 17:53:47 2019 +0000 Finalizing changes to retain history relative to GEFS/scripts source for exwave scripts commit 4388122b7ca0e32caec0e44435c2ec4434decf4d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 17:50:52 2019 +0000 Staging intermediate name change to retain history in exwave scripts relative to source GEFS/scripts commit f4c5e2c214145d165c8de73a0326c7d30285c3ac Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 17:48:08 2019 +0000 Staging removal of obsolete files commit 6b8321b25ac9291552addec1bb5a4b2eec5eff9c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 15:10:24 2019 +0000 Removing extensions gefs/gens (all will be set at the appropriate j-job, links will be made to fix_wave.), making error reporting codes consistent acrros ex-scripts. commit 1800288101815c3adf17ee071d3d04ab525e154b Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 13:48:18 2019 +0000 Renaming after generalization of calls to ex-scripts from GEFS workflow commit 7bae5b660bbb12efbd7200180d5435106ecc0e85 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 13:30:06 2019 +0000 Changing extension to gens matchin NCO parameter, which is set to gens for all gefs-related runs. commit 4bd4562e77da8552ceeac317c945570afc389ddc Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Nov 7 21:48:25 2019 +0000 Adding wave components to global-workflow (fix/wave, jobs, parm/wave, scripts/exwave* ush/wave_*). Massive changes still required for this to work. Paths need to be re-routed, script names need to be adjusted, hard-wired ush-script parameters need to be moved into parm/wave. commit fb95cd3c304b623bf95e2618b71b2e649751f685 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Tue Nov 5 05:34:56 2019 +0000 Change way wave restart files are produced In order to facilitate faster cycle turnover, instead of copying the wave restart files at the end of the forecast, symbolic links to the final destination are created before the forecast. This allows the restart directory to be populated immediately, so that the next cycle can commence while the current cycle finishes. Change-Id: I887dddec88e32ad08fefc5a8080c9f553965b9dc commit 750ba243dc1040eb008bda9eddeecc313de5ad28 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Sun Nov 3 08:07:06 2019 +0000 Update NEMS app for new WW3 version An undocumented change to how the peak frequencies were computed in WW3 resulted in unrealistically large peak frequencies. Coupled with a bug in Jasper, this caused crashes during grib2 encoding. Change-Id: Iface172ec8f6da816a4b56af73e8fb091dd57584 commit c2696f6951c8e0dca1b853009a88cef6846a02bf Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Nov 1 10:02:45 2019 +0000 Update NEMS app to incorporate latest WW3 changes The NEMS app is updated to incorporate changes to WW3 for the grib2 encoders and make profiling optional to improve performance. Change-Id: I6b7c96128f116698c27f037129db4ba8f591551b commit 632bfe92a6912e981b98f84d9782adcd5650d9f9 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Oct 25 16:56:16 2019 +0000 Fix previous merge enabling Hera Change-Id: I277baff3dd5c8f7485d4be1c8052837c3fbadc46 commit 78924915ed4add9511c6b283119015f048201baf Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Oct 25 13:47:42 2019 +0000 Add capability to run on Hera Change-Id: I61da1adcfa1b0ff09222c15b2c4e58c6af8a853b commit e748ef122e196028816da5aa3a05f0179cabddc9 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Sun Oct 20 08:06:20 2019 +0000 Update NEMS app to version for GEFS retrospective The NEMS app is updated to check out the version for phase 2 of the GEFS v12 retrospective. Change-Id: Iddfa75a78965cf19eca2bca7f9fbbf45dcd457a6 commit b7dc7e6124dbde4b0c41cfaca6a457e5bc995066 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Sat Oct 12 18:29:16 2019 +0000 Update app for WW3 OMP fix Change-Id: I41523cb5313b18eba4301d599f99ec67ea6c9bc4 Refs: #58418 commit 59883cb4ff503fd7a92e371389a5ed4f467da5e2 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Oct 10 01:51:06 2019 +0000 Fix bug with creating WW3 restart directory Change-Id: I7002db6175d4e994318e6274071dca1475ae3121 Refs: #58418 commit 519a99c671db60eb8d994190fa75102c8a4b01e4 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Wed Oct 9 19:10:26 2019 +0000 Update NEMS app version for Hera port Change-Id: I19cdf40e4c0a147d138cc59fc720b7608b51554a Refs: #58418 commit a9309088cee6591eda24318af55f8566c79285a5 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Mon Oct 7 20:18:14 2019 +0000 Update post to more recent version Change-Id: I8aab5d3d532fbfc444abd4c1c71e10f55906500c Refs: #58418 commit 735f421618849dbda49a1c30ccaabd490e333544 Merge: 865ea5aa c68728b5 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Oct 3 17:05:25 2019 +0000 Merge branch 'develop' into lgan_fv3_ww3 commit 865ea5aa37fc866b83dc09fb10f6b1021dc09eee Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Oct 3 16:54:24 2019 +0000 Update NEMS app checkout to ver with GSDCHEM 0.8.8 Change-Id: Idd286ae4300f0b067d3f38a2aa76b27f2d3911df Refs: #58418, #62104 commit ad1b52817e367f2dd09f961618af72ba3cd84939 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Tue Oct 1 20:19:19 2019 +0000 Fix issue with exglobal not creating wave restart directory The wave restart directory was not being created by exglobal, causing the copying of wave restart files to fail. Modified the directory creation to use the new restart subdirectory. Change-Id: I77fe3a72249efd3e688ece47f0778b30e034ff24 Refs: #58418 commit 8a312b398ea79bacef025d19252ef0fd98cffa82 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Sep 25 02:26:51 2019 +0000 global-workflow wave component: adding rundata and restart directories to store model run files (binary ww3, log, forcing inputs etc) and restart following new directory tree structure. commit 67adca4ac31d1219c173d3af0c7a905f4e7d3382 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Sep 18 02:47:03 2019 +0000 Winding back changes to wave-related parms PDY_PCYC etc, and adding correct parm cyc defining directory, that was erroneously pointing to non-existent parm cycm1. commit 65fe319c30dfceff7ef265c3f5aa6eb2a1ce049e Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Sep 17 21:44:59 2019 +0000 Adding parms CDATE_PCYC, PDY_PCYC and cyc_pcyc to exglobal_fcst_nemsfv3gfs.sh for setting location of wave component restart file as a function of time between cycles commit af747496f8b4b2de287d061a5094135083410803 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Sep 5 18:59:49 2019 +0000 Update NEMS app version to a master commit Previously the checkout for the FV3-GSDCHEM-WW3 app temporarily pointed to an interim commit that included GSDCHEM 0.87 and used ESMF 8.0.0bs40+ to facilitate development while waiting for the app to merge a full update to master. That update has now been made to the app master, so the checkout commit is now updated to point to that new version. The new FV3-GSDCHEM-WW3 app commit updates to GSDCHEM 0.87 and ESMF 8.0.0bs47, and also updates the other components to recent development versions. Change-Id: I0318535aa7564b48567a6442cdda074007095c03 Refs: #58418 commit 57f74c842ba30e40f6e2c3ba1bd4802388aa068f Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Aug 23 16:34:57 2019 +0000 Update UFS_utils version to work with GEFS The GEFS init system requires changes to global_chgres_driver.sh that are not present in v1.0.0. The UFS_utils version is updated to the current tip of the develop branch, which includes the necessary changes. Change-Id: I097b16342ca081e867786410a6ac9916fd5576fb Refs: #58418 commit 6fddfaf8212d29ee9a1eddbdbc7f710d2a19e426 Merge: 9fd2726d 9dc4c7a1 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Mon Aug 12 18:55:36 2019 +0000 Merge branch 'develop' into lgan_fv3_ww3 Change-Id: I068787c69f6610fa6896af16775378286d3e948b commit 9fd2726d64d62b7fc6196fb74060dc2ec15b3dab Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Mon Aug 5 18:24:21 2019 +0000 Update FV3-GSDCHEM-WW3 version Updated the checkout script to fetch a newer commit of the FV3-GSDCHEM-WW3 app. This newer version uses ESMF v8.0.0bs42, updates GSDCHEM to 0.87, WW3 to an OMP-enabled version, and FV3 to the latest develop commit. Change-Id: I7c16511e2d5d183abd96371afd0d0b237e5349aa Refs: #58418, #62104 commit f123abb87a153876a1cdcff5285d7c4dd5d66567 Merge: f4b47b5d dcfa5eee Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Wed Jul 31 18:31:17 2019 +0000 Merge remote-tracking branch 'origin/develop' into lgan_fv3_ww3 commit f4b47b5db243f4f0d172b3430e8a6f494946ca2a Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jul 18 21:49:50 2019 +0000 Cleaning up esmf profiling parms commit 056c6cd12288a6a8f3b1fd0fa6165f0b14667a71 Merge: 2bb5bacc 01b12587 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jul 18 21:45:33 2019 +0000 Merge branch 'lgan_fv3_ww3' of gerrit:global-workflow into lgan_fv3_ww3 commit 2bb5bacc59c830276c91c03ab490cfbc4781844e Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jul 18 21:45:23 2019 +0000 Branch lgan_fv3_ww3: changing exglobal_fcst to allow writing wave component restart files following number of daily cycles (gfs_cyc), and creating proper comout for wave restart files commit 01b12587ae6567677d95e15e990397f142c53633 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Tue Jul 16 17:49:44 2019 +0000 Fix clean arguments for building fv3 The arguments used when building the FV3-GSDCHEM-WW3 app used named arguments, but the script expects arguments without names. Change-Id: Ibc98a4c883f4f28c361104d03e4b17fb070dc7f8 Refs: #58418 commit 7135cc11b621165edc1fd7677af053e915ceb364 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Jul 8 17:03:55 2019 +0000 Small bugfix on copying out_pnt for wave output commit 65c3720495cc39ddd64c21b4c4e0080fccd877b0 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Jul 8 15:07:19 2019 +0000 Changes made to exglobal_fcst to streamline linking and copying IO from/to wave model component. commit 02704a3f0312383919adda7245300a5a60b0ecd8 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Jun 28 16:21:46 2019 +0000 Remove CDUMP requirement to use wave coupling Previously, the needed operations for wave coupling were only completed if CDUMP="gfs", even if cplwav=".true.". The GEFS uses a CDUMP="gdas", so this requirement had to be removed for the GEFS to operate correctly. Change-Id: I50964a7fc064f439b6c879fb199d910b3f7eadfc Refs: #58418 commit a3033a05458b47548d404f82148423edda4946cd Merge: 6cfec865 6ca55564 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Jun 27 19:38:01 2019 +0000 Merge branch 'master' into lgan_fv3_ww3 Change-Id: I31ee2e1a55de3db34de2dbcb029224729c3c9074 commit 6cfec865ebb0bcad8f81ebea21bbe4d06531ac99 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Jun 27 19:15:50 2019 +0000 Update checkout script to get combined FV3-WW3-GSDCHEM app Replaces the FV3-only checkout with one that clones the combined FV3-WW3-GSDCHEM app, which can be run in any combination of those components. This unified app is required to run coupled forecasts. The app will build correctly in the normal way using build_fv3.sh (and build_all.sh). Post is also reverted to the mainline project rather than the gtg version which has more restricted access. NOTES ON APP VERSION: 1) App does not build successfully on WCOSS-Cray due to a module dependency issue that will be sorted out later. 2) As committed, the WW3 build requires a path of 79 characters or less. This will be addressed in a future NEMS commit. For now, you can fix this manually by updating L19 of fv3gfs.fd/NEMS/src/incmake/component_WW3.mk to a larger number before building. Change-Id: I6c6d000650dc4ee8b2bbc9997195c3dfa2690520 Refs: #58418 commit 9af1480dee2351b540e873f1daf9d26928ec472d Author: lin.gan <lin.gan@noaa.gov> Date: Thu May 2 17:55:16 2019 +0000 Update resource to use dynamically calculated lowres on Theia include expdir commit ced016bb8b949350f92730bb52ca74cd3b8d9ad2 Author: lin.gan <lin.gan@noaa.gov> Date: Thu May 2 17:50:27 2019 +0000 Update resource to use dynamically calculated lowres on Theia commit 76f877c57b8f965779725a48059f6a1dc83290fa Author: lin.gan <lin.gan@noaa.gov> Date: Wed May 1 19:03:13 2019 +0000 Coupled ww3 tested with FV3 GFS forecast certified commit 56c686d03a420bf7216aafb86a572a054fcecdc0 Author: lin.gan <lin.gan@noaa.gov> Date: Wed May 1 14:06:18 2019 +0000 Testing include ICE data commit c24de7af395edcf9cc9f341ee758d829d747b24f Author: lin.gan <lin.gan@noaa.gov> Date: Mon Apr 22 14:15:17 2019 +0000 First try see email for record commit e789501ca90f72d7ef121cee8023bb340c0b3416 Author: lin.gan <lin.gan@noaa.gov> Date: Mon Apr 22 14:12:40 2019 +0000 First try see email for record commit ca2f9c56badd8f92bb97a25234ab55fb86cced68 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 2 14:41:05 2019 +0000 update gsi tag from fv3da.v1.0.42 to fv3da.v1.0.43 to remove a dead link in Ozomon commit dbad0c88855ff9fd06cf90a70d0ee112a065febf Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 2 00:57:27 2019 +0000 update POC for DA in release note commit f8f108f4a7030a3a3619fec52d6d6d8d961fab65 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 2 00:46:18 2019 +0000 merge NCO's back to q2fy19_nco branch. Update release notes commit cbbb49fb1b60f7bdde5f1bb66be79c86233b3122 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 29 21:18:02 2019 +0000 Update DA tag to fv3da.v1.0.42 commit 23a45dea9fd33480ab250b37e4d75d10500726cb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Mar 29 14:30:17 2019 +0000 Update model tag to nemsfv3gfs_beta_v1.0.18 to 1) correct a bug in precip units in the computation of frozen precipitation flag (srflag), 2) write fields that are continuously accumulated in model integration in restart files so that after a restart their acummulated values can be read in. (FV3 Issue #61788) commit d9b5538244fee0876185fa90f0b40b1869dc2619 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Mar 28 20:46:52 2019 +0000 update release note commit abff7d1d77b94b28aca48b996644df6e3fa4ccda Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Mar 28 20:45:36 2019 +0000 replace current ecflow/def file swith NCO's copy commit 69c06ea44c639fd4716001edead49b5e2613a03d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Mar 26 02:25:15 2019 +0000 Squashed commit of the following from branch q2fy19_nco_rst Add restart capability of running GFS long forecast from the end or a failing point of last attempt. modified: jobs/JGLOBAL_FORECAST, parm/config/config.base.nco.static parm/config/config.fcst, and scripts/exglobal_fcst_nemsfv3gfs.sh. restart_interval_gfs is used to control the frequency of writing out restart ICs, which are saved under ROTDIR for emc parallels and NWGES for NCO production. exglobal_fcst_nemsfv3gfs.sh script has been modified to autimatically detect if the model should execute as a cold, or warm start, or as rerun. If it is a rerun, the script will look for saved ICs that is restart_interval_gfs hours back from the last ending point. use 8x24 instead of 12x16 layout in config.fv3 for C768 -- Matt Pyle indicated this will actually speed up a 16-day forecasts by about 2 minutes per his test update to model tag nemsfv3gfs_beta_v1.0.17 to address restart I/O issues #60879 commit e01d1df6a81f7998574fa1145e05955f93ecf14d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 25 23:16:05 2019 +0000 Update DA tag to fv3da.v1.0.41 (Q3FY19 GDAS observation upgrade) commit 61b9da080d146fdc16c63aabdb4734ad5cbce8b9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Mar 5 18:59:56 2019 +0000 minor updates to resources usages in config.vrfy, config.resources and config.post on computers other an Dell to be consistent with the master repository

…ave_statgem Updating wave_stat step

Squashed commit of the following: commit 0e0dc87 Merge: b133700 95a6343 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 10:54:44 2020 -0400 Merge pull request NOAA-EMC#42 from NOAA-EMC/hotfix/viewer Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer commit 95a6343 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 14:43:44 2020 +0000 Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer commit b133700 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 13:01:38 2020 +0000 Issue NOAA-EMC#21 - correct syntax for machine if-blocks in setup_expt scripts commit f4ee509 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 20:52:49 2020 +0000 Issue NOAA-EMC#21 - remove unneeded logic from partition check commit 4acc80f Merge: accb6f4 fb1c79f Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Wed Mar 25 15:22:51 2020 -0400 Merge pull request NOAA-EMC#40 from NOAA-EMC/port2wcoss3p5 Issue NOAA-EMC#21 - Add support for WCOSS phase 3.5 commit fb1c79f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 16:06:54 2020 +0000 Issue NOAA-EMC#21 - updated WCOSS phase 3.5 queues commit 08a5354 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 14:58:14 2020 +0000 Issue NOAA-EMC#21 - add phase 3.5 support - add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files commit accb6f4 Merge: 057b2a8 8b51b56 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 14:01:30 2020 -0400 Merge pull request NOAA-EMC#39 from NOAA-EMC/feature/verif-tag Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub commit 8b51b56 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 17:40:18 2020 +0000 Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub commit 057b2a8 Merge: 0377d20 622167d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 11 12:00:58 2020 -0400 Merge pull request NOAA-EMC#29 from NOAA-EMC/feature/manage_externals Issue NOAA-EMC#3 - Introduce manage_externals as replacement for checkout.sh commit 622167d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 18:20:31 2020 +0000 Issue NOAA-EMC#3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh commit e83b90d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 17:00:15 2020 +0000 Issue NOAA-EMC#3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already commit 8699b46 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:30:54 2020 +0000 Issue NOAA-EMC#3 - updated README with new manic version commit e602cd3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:27:57 2020 +0000 Issue NOAA-EMC#3 - updated link_fv3gfs.sh to adjust wafs links commit 830c73f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:21:45 2020 +0000 Issue NOAA-EMC#3 - update EMC_verif-global tag in Externals.cfg after sync with develop commit 40084e6 Merge: f662fff 0377d20 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:18:52 2020 +0000 Issue NOAA-EMC#3 - Merge branch 'develop' into feature/manage_externals commit 0377d20 Merge: 1b359db 2552467 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:43:16 2020 -0500 Merge pull request NOAA-EMC#28 from NOAA-EMC/feature/metplus2 Issue NOAA-EMC#8 - add switch for MET+ jobs commit 2552467 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:31:02 2020 +0000 Issue NOAA-EMC#8 - add switch for MET+ jobs commit 1b359db Merge: 0359d34 31bb7d3 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 10:19:36 2020 -0500 Merge pull request NOAA-EMC#26 from NOAA-EMC/feature/metplus Feature/metplus - refactored MET+ jobs to resolve timing issues commit 31bb7d3 Merge: eb73e52 0359d34 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed Feb 19 15:24:42 2020 +0000 Merge branch 'develop' into feature/metplus commit f662fff Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:57:05 2020 +0000 Issue NOAA-EMC#3 - Updated README with new manic tag v1.1.7 commit e3196a8 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 13 15:59:06 2020 -0500 Update README.md commit e46b175 Merge: 4bd0e20 0359d34 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 20:38:04 2020 +0000 Issue NOAA-EMC#3 - sync merge with develop branch commit 0359d34 Merge: 1d9a1f0 bd00cb9 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Thu Feb 13 09:53:59 2020 -0500 Merge pull request NOAA-EMC#19 from NOAA-EMC/feature/remove_theia Feature/remove theia commit eb73e52 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Feb 7 14:04:37 2020 +0000 Update EMC_verif-global checkout to verif_global_v1.5.0 commit bd00cb9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:41:05 2020 +0000 Issue NOAA-EMC#4 - bug fix in getic.sh for v15 commit 1c85197 Merge: 67dae40 1d9a1f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:27:18 2020 +0000 Issue # 4 - Sync merge branch 'develop' into feature/remove_theia commit 1d9a1f0 Merge: 3ed9267 bdbecaa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Feb 7 08:11:21 2020 -0500 Merge pull request NOAA-EMC#18 from lgannoaa/exception_handling Exception handling commit 4bd0e20 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 11:55:31 2020 -0500 Update README.md commit d9ea1ac Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 6 16:03:11 2020 +0000 Issue NOAA-EMC#3 - reduce hashes down to minimum 8 characters commit bdbecaa Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jan 29 15:15:52 2020 +0000 Display exception handling message for individual package with location of the log file commit b64fd5f Merge: cf00863 3ed9267 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:24:37 2020 +0000 Merge branch 'develop' into feature/manage_externals commit cf00863 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:23:14 2020 +0000 Issue NOAA-EMC#3 - remove copy of manage_externals under util and add README.md file commit c12e879 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Jan 27 19:38:19 2020 +0000 Implement exception handling in build_all script commit bfc7bb0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jan 27 19:06:17 2020 +0000 Issue NOAA-EMC#3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds. commit 4d5713d Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 15:51:28 2020 +0000 Testing github commit commit 786806f Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 15:04:16 2020 +0000 Missed file format updates in a few places in config.metp commit d0a3b53 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 14:30:29 2020 +0000 init commit for exception handling branch commit c11dfef Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 14:07:29 2020 +0000 Update EMC_verif-global tag to verif_global_v1.4.1 commit 0ea809c Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jan 23 13:29:56 2020 +0000 Update file format variable in config.metp of online archive files commit c0d7179 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:37:16 2020 +0000 Add updated env machine files for gfsmetp commit 82e6907 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:29:23 2020 +0000 Update config.resources for gfsmetp commit 72e8adf Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:19:31 2020 +0000 Update EMC_verif-global tag checkout to 1.4.0 commit 6872f79 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:14:25 2020 +0000 Add rocoto METplus job script commit 9c94156 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:09:13 2020 +0000 Changes to setup_workflow.py for gfsmetp metatask commit 3ed9267 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 14 19:32:36 2020 +0000 Issue NOAA-EMC#10 - mid-year update to bufr station list (develop) commit 1915aa9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 10 18:36:32 2020 +0000 Issue NOAA-EMC#8 - pulled in config.metp and modifications to two setup scripts commit 67dae40 Merge: f78eb1b 091f4ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:15:45 2020 +0000 Merge branch 'develop' into feature/remove_theia commit f78eb1b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:13:08 2020 +0000 Issue NOAA-EMC#4 - removed references to Theia and Theia scripts commit 091f4ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 19:37:45 2020 +0000 Issue NOAA-EMC#7 - missed update to gdas transfer file from GFSv15.2.5 updates commit 3fd4bcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 17 19:12:28 2019 +0000 GitHub Issue NOAA-EMC#2 - GFSv15.2.6 obsproc version update, earc bug fix, and tracker path update commit 5307952 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Dec 11 20:47:44 2019 +0000 HOTFIX - VLab Issue #72346 - fix to rocoto_viewer on Hera

KateFriedman-NOAA · 2020-04-01T13:34:09Z

Will use contrib documentation for Hera to setup manage_externals module there:

https://rdhpcs-common-docs.rdhpcs.noaa.gov/wiki/index.php/Managing_Packages_in_/contrib

Squashed commit of the following: commit 073e5f64eab5badbd8a30b2ea702ce27159186fe Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 16:44:14 2020 +0000 modified: arch.sh add external reference to VFRARCH. commit 53c818babc7c5e3dadc089823604b58bcb31bf0f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 16:30:04 2020 +0000 modified: arch.sh to clean old data under vrfyarch and touch remaining data to prevent them from being removed by the operation system commit 44dd4c28609d4e7c24cf87d5f69796ea8f7a6245 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Apr 9 12:00:15 2020 +0000 Issue #1: update selection of global_convinfo.txt and prepobs_errtable.global to be consistent with GFS v15.2.11 commit a8b655c0b543b1a3d94b7bb70130e58c2a747663 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 02:50:32 2020 +0000 modified: module_base.hera and module_base.wcoss_dell_p3 to point to esmf/8.0.1bs08 commit 4c1acf26cac49b9dd26ad404c6547cea1a969b7f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 02:18:43 2020 +0000 modified: checkout.sh to point to model tag GFS.v16.0.2, which includes following updates https://github.com/ufs-community/ufs-weather-model/pull/100 * in FV3: code changes to improve atm fcst->wrt data transfer and fix iau restart files * in NEMS: Code changes are added to reduce the atm->wav coupling time and to turn off flush for esmf print in MAIN_NEMS.F90 * When print_esmf is .true., set Verbosity = high and HierarchyProtocol = off in atm-wav nems.configure (print_esmf can be off in model_confgiure at run time). * update esmf lib to esmf801bs08. commit 41b68b5b7257a6f5a3ee1c88f3b8d3251b8097a9 Merge: 556614f5 ad9dd289 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Tue Apr 7 00:15:44 2020 -0400 Merge pull request #51 from ajhenrique/bugfix/gfsv16b_sbspost Wave component workflow updates commit ad9dd28990f6ee6727f6dec43d335545c979093e Merge: 3b135fe9 556614f5 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Mon Apr 6 00:01:32 2020 +0000 Merging changes in gfsv16b: pointing to junwang:ufs-weather-model:esmf8.0.1 commit 3b135fe9b6a2adfd337aa5c59188a3641ca68432 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Sun Apr 5 23:54:36 2020 +0000 Adding ROTDIR path for operationalnco envir commit 556614f596f1e3fdb0dca3affe320aaea3650b23 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Apr 4 00:40:20 2020 +0000 modified: sorc/checkout.sh to check out model branch checkout gfsv16_chsp which contains physics updates (czil, background diffusitivity and mixing length over stable boundary layer, and canopy heat storage) for reducing surface cold biases. modified: parm/config/config.fcst, tunn on canopy heat storage for slm=1. commit 83c546b74d1c8fae22535082dec8cc03d8477ad7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 18:55:08 2020 +0000 Adding back input file setting in global config.wave script. Changing print_esmf to .false. to supress verbosity in esmf library calls commit 551ae13fcaf35f86580707bba583bc3b825d796b Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:52:01 2020 +0000 Added RUN_ENVIR variable to wave j-jobs. Removed wavelog from wave scripts, now using only jlogfile commit 6c803647fb3c8c14e5da032b0f14add219d74cb5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:39:34 2020 +0000 Updated KEEPDATA block and added exit 0 to wave j-jobs commit 42e08a505263aee0c990417487e7a62d37405d80 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:34:38 2020 +0000 Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files commit ddb1b953789b4253d70db9bceb2e9a2d5b6fcc43 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:33:12 2020 +0000 Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files commit 6c272f9e0cb13da7481431c60fc5f4c494d8fb87 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:06:29 2020 +0000 Unified calls to EXECwave and EXECcode. Removed legacy ush/wave_* scripts. commit 6e1e023b2e2d547b3429bd66a724c735db542c74 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 13:26:18 2020 +0000 emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file. commit d5d3701eb32f3a9052d2bb9944bb2a402cd95018 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 13:25:54 2020 +0000 emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file. commit 84c8730053c930508bf4ca211b1440ce32f735a1 Merge: 8ef7dee8 49faf67f Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Apr 2 19:57:12 2020 +0000 Merge remote-tracking branch 'gfsv16b/feature/gfsv16b' into bugfix/gfsv16b_sbspost commit 8ef7dee8b60cf548b8c0fbe95a57d8a49845ac38 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Apr 2 19:54:07 2020 +0000 Adding idx file for subgrid grib2 files. Redirecting subgrid grib2 source to new native wave grid gnh_10m. Correcting bug on timing of second restart file stream on gdasfcst runs commit 4355153d85c4d9a553dc4838659005a791fe12d7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Apr 1 19:44:37 2020 +0000 adding hooks and parms for new wave model grids in several scripts. commit 49faf67fd401856923947972053395d351330ede Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Mon Mar 30 14:32:42 2020 +0000 GitHub Issue #1 updated AWIPS parm cards with DZDT commit 84c28812d8d681c486132bb02cb9478055ec88b1 Merge: 7470bfe4 0e0dc873 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 27 18:50:36 2020 +0000 Issue #1: Merge branch 'develop' at 0e0dc87 into feature/gfsv16b commit 7470bfe459fcb28751800b525d9387fbc486b8e3 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 27 18:34:52 2020 +0000 Issue #1: maintenance and consistency updates * modulefiles/module_base.wcoss_dell_p3 - change prod_envir from version 1.0.2 to 1.1.0 * scripts/exglobal_fcst_nemsfv3gfs.sh - add PREFIX_ATMINC for EnKF. PREFIX_ATMINC defaults to a blank string - no change in current behavior * ush/hpssarch_gen.sh - add ensemble mean sfcfXXX to enkf tarball commit 79b91dc2399609d806b99f0ed5271494d1bab6d0 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Mar 27 04:46:51 2020 +0000 Adding missing cd fv3gfs.fd back in checkout.sh commit 0e0dc873ceff26f9666fc40287ad2457171719c7 Merge: b133700a 95a63432 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 10:54:44 2020 -0400 Merge pull request #42 from NOAA-EMC/hotfix/viewer Issue #41 - Update PRODUTIL paths for WCOSS in viewer commit 95a63432f3fbdd8745d0617089485cdc332f57e7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 14:43:44 2020 +0000 Issue #41 - Update PRODUTIL paths for WCOSS in viewer commit b133700a4a65fe5334e5b5522a8c6f83bf0bbd0c Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 13:01:38 2020 +0000 Issue #21 - correct syntax for machine if-blocks in setup_expt scripts commit c3fbe7970c03aaad8e5b511b9d43931da9382fd3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Mar 26 12:05:46 2020 +0000 Adding new grids, changes to modulefiles for poiting to new esmf module commit f4ee5098988106037528650ba8a15922150b70af Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 20:52:49 2020 +0000 Issue #21 - remove unneeded logic from partition check commit 4acc80f6037a4d0fd43a64e9178e7aadbd6162f5 Merge: accb6f4b fb1c79f4 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Wed Mar 25 15:22:51 2020 -0400 Merge pull request #40 from NOAA-EMC/port2wcoss3p5 Issue #21 - Add support for WCOSS phase 3.5 commit fb1c79f4b7136e09c9d35d9d05303116036f58c9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 16:06:54 2020 +0000 Issue #21 - updated WCOSS phase 3.5 queues commit 08a535492952d863f860977f0ab0da4bc79bc931 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 14:58:14 2020 +0000 Issue #21 - add phase 3.5 support - add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files commit be21d3f2bc06ef8e7e31edce08756ee6aee36d31 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 24 20:10:07 2020 +0000 Poiting exec to new location of ww3 executables (HOMEgfs/exec). Adding new NH 1/6, SH 1/4 deg grids for testing commit c4cc28b08ca58007882e9823a68f26c2c5eaf92b Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Mar 24 17:22:55 2020 +0000 Fix wave config begin and end echos commit 20d79d274be862b7147f17cd7654f2c770ce7425 Merge: 3efe1c23 accb6f4b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 23 18:19:08 2020 +0000 Issue #1: Merge branch 'develop' accb6f4 into feature/gfsv16b commit accb6f4b919871221e8037d5f154b157d88d1102 Merge: 057b2a82 8b51b56f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 14:01:30 2020 -0400 Merge pull request #39 from NOAA-EMC/feature/verif-tag Issue #38 - update EMC_verif-global pointer from VLab to GitHub commit 8b51b56f84289d1c01863b61421b21eccd22939c Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 17:40:18 2020 +0000 Issue #38 - update EMC_verif-global pointer from VLab to GitHub commit 3efe1c23fbe906953f3df4e6e6b43a604505dcf1 Author: Fanglin Yang <Fanglin.Yang@noaa.gov> Date: Sun Mar 22 16:49:40 2020 +0000 update arch.sh to remove selected RESTART files commit 586d0994aab2348c1deea521b37183ddf0a8f2d7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 19 14:01:16 2020 +0000 Issue #1 - update EMC_verif-global to tag verif_global_v1.6.0 in Externals.cfg commit f412f2ca8071baa6bd91f641c1fd8102e9271bef Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 19 13:53:34 2020 +0000 Issue #1: update EMC_verif-global to tag verif_global_v1.6.0 commit 94abe6a1caca4724fbc580d58928a6cf74a65590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 18 19:02:09 2020 +0000 Fix syntax error in setup_workflow_fcstonly.py commit 06ff92be074bac2728055a62ce0fa263a4d13cf6 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:37 2020 +0000 modify job card for tests commit a2b76f1d402c8568612dc727ebf36b548748589d Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:04 2020 +0000 modify namsnd TIMSTN commit 81bc3fc4090c4fd3bdec070abd9c117d5a09491d Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:09:24 2020 +0000 modify collectives mpmd design commit 9cbf9be8ea2a959a6711c10838ba46347451b7d1 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:08:41 2020 +0000 modify config.resources for postsnd number of tasks commit e3945e03031db23dbb8681e3d1034cc07377ae2d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:38:07 2020 +0000 Issue #1: add logic to check WAVE_CDUMP prior to setting npe_fcst_gfs commit 6fdc6365fa13c77f01ae0cdb82e74bbbd149f914 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:35:14 2020 +0000 Issue #1: DA workflow updates for GFS v16 (does not change results) commit c728925aaf6f8c2aac170e6987ed34e28e411053 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Mar 15 17:16:56 2020 +0000 Changes to test IOSTYP=3 and correct restart lines on ww3_multi.inp for rexcluding WW3 restarts. commit 9bc784f708e09e9f5392c662cae2ed51cfb09011 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Mar 14 17:43:00 2020 +0000 Changes to allow GFS fcsr cycle to have WW3 restart specs different to GDAS fcst (eg, turn off or on for GFS) commit 91610f80cef8911ac6aaae2ded67a95b4ff1d061 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:25:36 2020 +0000 Issue #1: update Externals.cfg to GFS v16 components commit 7dcf23281cddb9aabc20c73ec077a9a52ded56b8 Merge: 55130516 057b2a82 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:21:33 2020 +0000 Issue #1: Merge branch 'develop' at 057b2a8 into feature/gfsv16b commit 057b2a82fa43f7bc36c3e757ca7d48fb86b9541c Merge: 0377d20f 622167d5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 11 12:00:58 2020 -0400 Merge pull request #29 from NOAA-EMC/feature/manage_externals Issue #3 - Introduce manage_externals as replacement for checkout.sh commit 50649e274d2b074f4d3c6f18503b8bb6997a5bde Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Mar 11 03:16:10 2020 +0000 General cleanup for reducing size of wavepostsbs RUNDIR and improve runtime. Reorganized parameters in postsbs to provide more clarity and upfront control and the config.wave level commit 55130516cea5ea67b758b52c9445aca667e1c35a Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 9 13:59:44 2020 +0000 Add ability to have wave jobs depending on cdump commit 622167d5fb3322921a1702639ebccb42da1f5e1b Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 18:20:31 2020 +0000 Issue #3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh commit e83b90d50999f64ed5208d94a8cceb8179c9395f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 17:00:15 2020 +0000 Issue #3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already commit 8699b46aa1797e8dd29edff1d4bd3b511ad5cb1c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:30:54 2020 +0000 Issue #3 - updated README with new manic version commit e602cd3d536b55b86b04285aedd5781d8d3a9f82 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:27:57 2020 +0000 Issue #3 - updated link_fv3gfs.sh to adjust wafs links commit 830c73f430d70cc516dea419a8969c6fd9fc0910 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:21:45 2020 +0000 Issue #3 - update EMC_verif-global tag in Externals.cfg after sync with develop commit 40084e67810d21366d0e9af6d9937c29aa4965ad Merge: f662fffa 0377d20f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:18:52 2020 +0000 Issue #3 - Merge branch 'develop' into feature/manage_externals commit cfa5be4b414f67efa8eb17c8fe5060fe94cd48ea Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 14:05:29 2020 +0000 Issue #1 - remove gfswave restart archival commit 85b3a1d24e89c60e9977ecc549656a0145caeb8b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:51:22 2020 +0000 Issue #1: update postsnd section of config.resources commit 6c8dc92953e5c003882ffbb8376a8b1b2c8668d2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:40:38 2020 +0000 Issue #1: update config files to be consistent with settings in pre-implementation GFS v16 real-time and retrospective parallels * parm/config/config.anal - reduce second outer loop iteration count for gfs * parm/config/config.epos - add ENKF_SPREAD to toggle on/YES or off/NO generation of ensemble spread files * parm/config/config.fcst - set adjust_dry_mass for GDAS (true) and GFS (false) * parm/config/config.fv3 - remove nth_efcs, set C384 nth_fv3=1 * parm/config/config.resources - set nth_efcs to nth_fv3 (default 2) commit a107109d8fdd0292a3017f26e56863fbb28a63ce Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 16:08:23 2020 +0000 Fixed bug in config.fcst related to extra then commit 0de559a088ac670f2b105168988c18ee1b57488a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:55:50 2020 +0000 Issue #1: update exglobal_fcst_nemsfv3gfs.sh and checkout.sh * scripts/exglobal_fcst_nemsfv3gfs.sh - turn on adjust_dry_mass with dry_mass=98320.0, turn off iau_drymassfixer * sorc/checkout.sh - update to model tag GFS.v16.0.1 commit ce23e52730a9f6fe20215cb47563dd6f2dcb254a Merge: fa7bca5a 0377d20f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:36:50 2020 +0000 Issue #1: Merge branch 'develop' at 0377d20 into feature/gfsv16b commit 0377d20f3d019f77a47fc9860d6146fd3c8e5d94 Merge: 1b359dbe 25524675 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:43:16 2020 -0500 Merge pull request #28 from NOAA-EMC/feature/metplus2 Issue #8 - add switch for MET+ jobs commit 25524675a63e59829655bbd9a09abc4dca246357 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:31:02 2020 +0000 Issue #8 - add switch for MET+ jobs commit fa7bca5a5fb26886219190e9e5e5d6efb9f9ddab Merge: af73a39f cd67f975 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:08:57 2020 -0500 Merge pull request #25 from NOAA-EMC/feature/wave2global Feature/wave2global into feature/gfsv16b commit cd67f97592227fea0238327dade887d4584300c3 Merge: c72d7b5b af73a39f Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:03:10 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit c72d7b5bca4a67e83916edd17fb0e5c4612a7867 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Mar 4 23:53:41 2020 -0500 Clean up exwave_post_sbs commit 2e738f20930dfd7d5216920ec7cc26774be811f3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Mar 5 04:03:44 2020 +0000 Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh. commit b7638436b1e737077fbb2dad705e7ed157df261e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 21:02:04 2020 +0000 Fix to JWAVE_PREP to look back a day for rtofs commit 33cf0fc0f2a5d3b3ca749c9941835398f94e7606 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 19:59:56 2020 +0000 Adjustments after going through PR review commit 1b359dbeb31b94382619dfc9c67e77fffe46aaa0 Merge: 0359d342 31bb7d32 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 10:19:36 2020 -0500 Merge pull request #26 from NOAA-EMC/feature/metplus Feature/metplus - refactored MET+ jobs to resolve timing issues commit 5c8fa3dd2666b7fd90b473fb12629016ef402e3e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 13:03:12 2020 +0000 Adjust restart_interval if-blocks for DOIAU=YES in configs commit 2b337a8f8c900146905915032826faf9e6f07dc0 Merge: a4daafee e0a1a0ae Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:31:09 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit a4daafeecaf3fed38e637389ab5f4041b5139a4c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:30:58 2020 +0000 Adjustment to waveprep resources to match numbger of rtofs files, bugfix on generation of ascii spectral data commit af73a39fc8ae7868ea9d08081b98f84345fa4f95 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Mar 3 13:44:59 2020 +0000 Github Issue #1 Updated postsnd.sh commit e0a1a0aeb4066ab834fd93a86780196f55a7a447 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 18:45:50 2020 +0000 Fix gdasfcst dep on gldas commit 817f8faa6b0c71ef970da302d6e46b57c9ea8129 Merge: 48ed4c5f 203d1747 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 13:41:13 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 48ed4c5f4a6b0093941a97d475abdb6bed2937e5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Mar 2 04:22:02 2020 +0000 General cleanup. wavepostsbs wall time limit matches gfsfcst walltime . commit 4af83a430a8bb58f83d686535d39d9745de9ab6c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Mar 1 02:51:02 2020 +0000 Cleaning up prior to merging to gfsv16b commit 14f52dd35b7d6a1a9b98cff0da2426015cfabd3d Merge: 4400d7c3 d39ba74d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:17 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 4400d7c3e5e26bacc0ba892ef3178d4d906d57a8 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:13 2020 +0000 Changes to feal with waveprep and wavepost commit 203d174798aae0d4e581930fa8f49abb8421f81f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Feb 29 01:17:57 2020 +0000 Issue #1: two GFS v16 DA updates * sorc/checkout.sh - check out ProdGSI tag gfsda.v16.0.0 * parm/config/config.anal - remove REALTIME=NO section since not needed commit d39ba74d71b5bd5c510eb32cac17facdbe5a9a49 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 19:01:02 2020 +0000 Removed extra forward slashes in wave part of hpssarch_gen.sh commit 82889365da44196804b7d751a1c8c5992ca102ea Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 18:44:13 2020 +0000 Added waves to archival commit a8f4200d04d7c49a1ff1cd443f1f36fd949cb5db Merge: 9321bdc9 8997f2a2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:58:28 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 9321bdc9a5a85a4b458b3539bb4f15bdcbf2cf33 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:39:34 2020 +0000 Cleanup and added adjustments to other env files commit 8997f2a27a45ee018d33abdf1883914a38c88ffd Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 27 14:37:24 2020 +0000 Issue #1: check existence of EnKF spread file before adding to HPSS archive list commit 2d6620e9b961f290daab1369778644c799bec5cc Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:45:39 2020 +0000 rm nemsio utility commit 0120cf577df7faf2413e0b585423728ecd62657d Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:40:45 2020 +0000 modify config.resources for postsnd ppn=4 commit 0891840f8f43dccdd81573f2d6513b573de921aa Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:32:07 2020 +0000 modify config.resources for postsnd ppn=4 commit 67e20de5ac6e8f52312bc71adc5419330ebe6542 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 04:22:36 2020 +0000 Adding current smoothing flag to config.wave. Previous push alos contained changes to reflect improved wave model physics. commit 10164bdae0fdc53a604dc8e58b2a6a5fce5ebc99 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 03:47:36 2020 +0000 Adjustments to use gfs/gdas seaice file instead of omb file. Changes to intake rtofs 1hr files when available. commit 7145fd01ffcf3043dd1dea458ae866f208f32633 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 19:34:24 2020 +0000 Modify prep.sh to create rtofs symlink in ROTDIR if DO_WAVE=YES commit 5ac8c8683b6f3de8cc586bae8d3825b2bd67011c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 18:44:45 2020 +0000 Fix for missing nth_postsnd in config.resources commit 91456a9b7cfc285b78ec083a419592fafe6f75d0 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 15:52:32 2020 +0000 modified config.resources for bufrsnd commit 011a393c162a422859b1184e9f32dd50d1d48882 Merge: d01c3543 8806c9e4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 26 13:50:49 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit d01c3543e59bbabb491454788f17e818305de6fc Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:48:26 2020 +0000 Updates to checkout.sh from feature/gfsv16b commit 8806c9e4e3572169146a2ba3605a86680e35287c Merge: e87695c8 318d8b46 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 13:45:13 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b Commit NetCDF parallel reading capability. commit 3b5d451aa165dc368c674cd2a71d6786097869e7 Merge: 88d8abda 318d8b46 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:43:52 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit e87695c8b151e3c64cafed97ad921849d3998ece Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 13:42:41 2020 +0000 reinstate nemsio utility files for namsio data format commit 318d8b46ff7269899db92ae72f68fa1110406a16 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Feb 25 20:17:40 2020 +0000 Issue #1: add gldas and esfc to the list of log files to write to HPSS commit 6102b6971fc9ee1f5dfc20c98a625b20e7f2cbbc Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:32:21 2020 +0000 Adding a parallel reading interface commit c0b9ddc5dfe0d5dfcf1592fabf295ad951cc20b3 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:31:19 2020 +0000 adding parallel reading interface commit 057b10cc02f66cdede531a04967a2d6a51efb148 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:30:16 2020 +0000 Clean up un-used variable commit 25ac8f0a64ea710e7b8dd55dd3d03cdfd600c671 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:28:59 2020 +0000 Modify to call parallel reading subroutine commit c1a25a5ec5d46d52cd931b5178abba45bfb41345 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:20:26 2020 +0000 parallelizing gfsbufr.f for reading NetCDF files commit b28020f0c03ce54db3022de43ecc0f7119bce6d2 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:17:32 2020 +0000 modify driver for parallel read test commit bce7d9642decf393e2b314e837f557765a6382b8 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:14:45 2020 +0000 modify postsnd resource for parallel read commit f89912416cf5347fbcd6e1378aae61e99ffa14ac Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 18:59:26 2020 +0000 remove testing jobs script JGFS_POSTSND_netcdf commit 88d8abda4adf3c945b1c5526dfca6b1774b91f3b Merge: 33c65a19 9d6e8464 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 25 17:49:29 2020 +0000 Sync merge with feature/gfsv16b commit 9d6e8464aa207da41901278c9e5454efd9e475a2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 25 04:45:44 2020 +0000 setup_workflow_fcstonly.py failed. Updated to get "reservation" from config.base. commit 36367563af24402db621179bda139f17d3ca1d44 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 24 20:37:27 2020 +0000 Issue #1: update config files for use in GFS v16 real-time and retrospective parallels commit 33c65a19cbe68342cd9ab3f434a22a399be3a1b4 Merge: 9a1f79d7 0aa8dacf Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Feb 24 15:37:48 2020 +0000 Bugfix for creating spectra files in wavepostsbs step commit 0aa8dacfeef3fd1bf3abe368c9cdaf9a16b57cde Merge: 8148766c 431c7866 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:57:55 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 8148766c489057553e20fc42bad494f1ed5aa70c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:56:56 2020 +0000 Small fix to exglobal_fcst_nemsfv3gfs.sh commit 431c78668c98268cb749397ec8218428104c9687 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 20 15:19:42 2020 +0000 Issue #1: remove RESERVATION from archive jobs commit ebf02b19f98f90ae3c8bc57cc5c2325260aaab0a Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 20 14:05:52 2020 +0000 Remove output_1st_tstep_rst override and add iau_drymassfixer commit 36cb42dc5d8985f8402405dce811f04063f572ab Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:30:28 2020 +0000 Removing references to gens/gefs from exglobal_fcst_fcst_nemsfv3gfs.sh in preparation for merge back to gfsv16b commit 9a1f79d7aa0343ea95d1af419f55a2d0d356e99d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:19:11 2020 +0000 Adding back lost and found EOF in section that creates input.nml commit 635d95d58c932909dc6a29c62515c385dc01587a Merge: f31de5aa c4454b3a Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:42:49 2020 +0000 Additional sync merge with feature/gfsv16b today commit f31de5aaa6c915ac8bc1184726bead71dc9157d4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:18:23 2020 +0000 Removing copies of exglobal_fcst that were added erroneously commit c4454b3ab2c5fbda7890546f31f2fe38daa5edd9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 19 16:41:38 2020 +0000 modified: sorc/checkout.sh to check out model tag GFS.v16.0.0, which contains updates of dry mass fixer, WW3 thread reproducibility and post/8.0.5 lib modified: scripts/exglobal_fcst_nemsfv3gfs.sh to add iau_drymassfixer = .true. commit 31bb7d32181ca84229c3c3374226bbd37784ddc4 Merge: eb73e520 0359d342 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed Feb 19 15:24:42 2020 +0000 Merge branch 'develop' into feature/metplus commit e058a9054d7edb2b92ee590b6dede733fe4bc4a3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 15:05:59 2020 +0000 Changes to config.resources after wave tests commit 24844e403745fb5b292fcde0aae53a3c497aa295 Merge: 0f2f2b0b c2e99795 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 14:03:58 2020 +0000 Sync merge with feature/gfsv16b commit 0f2f2b0be1ff97485a23cdaf214d428927290c3d Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 13:36:14 2020 +0000 Updates to config.wave and scripts/exwave_post_sbs.sh commit c2e997959144b2628185b58e5480f25a7cd8852a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Feb 19 00:42:49 2020 +0000 Issue #1: add backup option to fit2obs, update config files * jobs/rocoto/vrfy.sh - set verification date based on VBACKUP_FITS * parm/config/config.anal - correct ozinfo typo, enclose realtime settings in REALTIME block * parm/config/config.resources - set npe_node_post for WCOSS_DELL_P3, reduce C768 eobs npe_eobs * parm/config/config.vrfy - add VBACKUP_FITS commit ed160c03ff53e10aa0e3d57ac802e8e6fecd54a3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 22:22:10 2020 +0000 modified: sorc/checkout.sh to check out gldas release branch gldas_gfsv16_release.v1.0.0 commit c08ebb8a2aca1061272c05643160aebc2a06eac5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 17:22:01 2020 +0000 modified: checkout.sh to use UPP: upp_gfsv16_release.v1.0.5 ufs-util: release/ops-gfsv16 commit a6bc7f8ad50a0c7400c17c3d1423e2aefccff2ed Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 17:12:17 2020 +0000 modified: arch.sh to archive gfs_pgrb2b group into HPSS commit 958ee38b6fb9c76056a3045f43dec92a503f48c9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 20:38:53 2020 +0000 Increasing resources for eupd when C384 commit db5c593f2c34111a13bddaa1f4f59edcd74c2118 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Feb 14 20:12:00 2020 +0000 Issue #1: update modulefiles/module_base.hera to crtm/2.3.0 commit f662fffa25a99617828e4322bf789978cf523248 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:57:05 2020 +0000 Issue #3 - Updated README with new manic tag v1.1.7 commit 94cd971fb14c4b7204822ca780d6e9dbe945b595 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:31:32 2020 +0000 Updates to wave scripts commit 4e006dc33fb68febaa33524dfafaa1f0d3282939 Merge: fcc5a74a a94a44a8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 14 00:50:00 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit fcc5a74a95d37ef2d7193ec6c0c8e5513a0f3548 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 14 00:48:44 2020 +0000 modified: config.fcst to fix a bug commit e3196a84a0ecd2b54d59abfdc9184622a9c605ca Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 13 15:59:06 2020 -0500 Update README.md commit e46b175d8a309010e421ccd54e6d6eb083af3579 Merge: 4bd0e203 0359d342 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 20:38:04 2020 +0000 Issue #3 - sync merge with develop branch commit aec4c288e1f96ee7f3f2a834014edde0ef4ea9a2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 19:09:56 2020 +0000 Added EUPD_CYC variable to config.base.emc.dyn commit a94a44a82be752f6542b50c8d6ce082f7272dc4c Merge: 0f0894bf 0359d342 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 13 18:59:51 2020 +0000 Issue #1: Merge branch 'develop' at 0359d34 into feature/gfsv16b commit 0359d3425a8710e7b696b94456ec8e54e9a2fd9f Merge: 1d9a1f00 bd00cb98 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Thu Feb 13 09:53:59 2020 -0500 Merge pull request #19 from NOAA-EMC/feature/remove_theia Feature/remove theia commit 0f0894bfcc8a25ea921026d911a38e7b726ce638 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Thu Feb 13 14:15:16 2020 +0000 GitHub Issue #1 removed script exnawips.sh.ecf (not used) commit adabbaf95b32b7292cc0f09447f98773795f2b1e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:34:02 2020 +0000 change netcdf modules commit 767b9c33e29aff3470d914edb9289ef8236331ed Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:32:25 2020 +0000 remove hardwired libs commit be3c324dc1e35f336b1df6f2be8ab335f45f1b9e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:31:13 2020 +0000 Modified modules for parallel_netcdf commit 3e3c119d096f5d03082183655d0f5db4e4991951 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:29:53 2020 +0000 Added netcdf_parallel modules commit 0b25f5b648892a068ac6ae1c30890729576b2c5c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 12 20:28:27 2020 +0000 Changes to be committed: deleted: ../driver/product/driver_WAFS.README deleted: ../scripts/exgfs_grib_wafs.sh.ecf deleted: mkwfsgbl.sh commit 2a2a8d3fe1fcd0bebf07d34c32697f64f5ac745c Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 18:00:14 2020 +0000 Adjusting config.resources for C384 commit 8bdf2387b1fad22cfa2da37a7428406a847d2362 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 17:33:53 2020 +0000 Reducing npe_eobs from 400 to 100 commit 648479c086776b0c7b4d24b4052130d48dfaa64a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Feb 12 15:56:39 2020 +0000 Issue #1: add reservation keyword to rocoto workflow generator for WCOSS_DELL_P3 commit c48ac6df8c5c166a1ef51b173372f3f26f9d877a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 14:46:26 2020 +0000 Removing gefs from checkout.sh and link_fv3gfs.sh commit fc0b624223baa54315e7ad52f48b689fff29bccb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 12 02:37:36 2020 +0000 modified: exglobal_fcst_nemsfv3gfs.sh -- bug fix commit 97e34f9728ae3bda52fe636994c91453b5cccfb4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 17:47:34 2020 +0000 removed the following obsolete lines from exglobal_fcst_nemsfv3gfs.sh JCAP_STP=${JCAP_STP:-$JCAP_CASE} LONB_STP=${LONB_STP:-$LONB_CASE} LATB_STP=${LATB_STP:-$LATB_CASE} commit 60098fc7238b35f461ec9aa8fabd924fb09372ce Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 17:34:40 2020 +0000 1. modified: parm/config/config.fcst to set lheatstrg=".false." for both NOAH-LSM and NOAH-MP per the decision made by the physics group. More development is required to use the canopy heat storage parameterization. 2. modified: scripts/exglobal_fcst_nemsfv3gfs.sh to 1) change the default of lheatstrg to ".false." 2) for ensemble forecast, change &nam_stochy ntrunc = $JCAP_STP lon_s = $LONB_STP lat_s = $LATB_STP EOF to &nam_stochy / EOF Phil Pegion noted: "If you are concerned about the ensemble runtime with stochastic physics on, I recommend removing ntrunc, lat_s, and lon_s from the namelist. I have fixed the bug that forced the spectral resolution of the random patterns to be related to the number of mpi tasks. Now the code calculates the appropriate truncation for a given length scale. It probably won't save a lot of time, but it is worth it. Scientifically, the patterns are the same. commit ababd08e676f45524ec616e60a0290c26d3b1795 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Feb 11 16:28:12 2020 +0000 Updated data card grib2_awpgfs102.003 commit eef10607bedf12153580d85d5a7952ea90c8b198 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 16:14:29 2020 +0000 resort back to older w3emc lib since w3emc_para does not support mersenne_twister modified: modulefiles/gfs_bufr.hera modified: modulefiles/gfs_bufr.wcoss_dell_p3 commit 8fe97ac689aebb2243b6e69cbf7015e636d68852 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 15:45:33 2020 +0000 modified: modulefiles/gfs_bufr.hera and modulefiles/gfs_bufr.wcoss_dell_p3 to load paralel netcdf modules commit 78a7294eb1937758fa81f72cc5045d3d680a07c6 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:29:15 2020 +0000 Fixed missing fi in checkout.sh commit 15628bda0621187949204d0d9af4d901e205495d Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:21:39 2020 +0000 Change fv3gfs checkout to develop branch of ufs-weather-model commit 631820beca07522faedccc47d7415c4b6b250273 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:08:30 2020 +0000 Changing checkout.sh to Henrique's fork branch gfsv16_wave commit cc742b672af73931999bddf115bc32f07ed69f87 Merge: ba63c4f8 1d9a1f00 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 10 17:19:58 2020 +0000 Issue #1: Merge branch 'develop' at commit:1d9a1f0 into feature/gfsv16b commit a518485866536102312c477926ae42a59d5e561e Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 17:02:22 2020 +0000 Changing fv3gfs.fd checkout back to gfsv16_updates commit c75d35b6802592b17640fecace38d9103a14b1bc Merge: 2a46ee2e ba63c4f8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 16:44:53 2020 +0000 Sync merge with feature/gfsv16b commit 2a46ee2ee71da5c75d11cbc96b048a1e34148239 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 15:42:35 2020 +0000 Updates for wave and fcst scripts, as well as config.wave commit ba63c4f83955bfc38bc3f2fbd9f8c6447630a803 Merge: fc2144e6 75a9fb5d Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Sat Feb 8 20:35:14 2020 -0500 Merge pull request #17 from NOAA-EMC/feature/gfsv16b_paranetcdf Feature/gfsv16b paranetcdf commit 75a9fb5d4dd6d4ef91bdee93769031465ddd57e9 Merge: a2932c5b 6f256b4f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 9 01:22:29 2020 +0000 Merge branch 'feature/gfsv16b_paranetcdf' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_paranetcdf commit a2932c5be934fb45416c92caa01f0fa3df4829d1 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 9 01:21:52 2020 +0000 modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.nco.static commit 6f256b4f7aadb9913cd78962e19dcabcf7ba49e4 Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov> Date: Fri Feb 7 20:07:24 2020 +0000 Added namelist option 'cld_amt' to enkf_chgres_recenter_ncio. Default is .false., when .true. will attempt to read in cld_amt and print error (but continue) if it is missing from input file commit eb0681751af6b850e99c880c11343af10000d54d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 7 16:20:43 2020 +0000 modified: sorc/checkout.sh update ufs_util repo commit b9feca17a5e566d75995049ba8e1497eb205b96d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 7 15:03:52 2020 +0000 modified: ../../modulefiles/module_base.hera modified: config.anal control ABI and AHI data usage modified: config.resources updates based on pull reviews modified: ../../sorc/gaussian_sfcanl.fd/makefile.sh use parallel netcdf commit eb73e520716215c3f11cc4cdfce3831408221766 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Feb 7 14:04:37 2020 +0000 Update EMC_verif-global checkout to verif_global_v1.5.0 commit bd00cb9812c5fb400ba4399d183b2198b8e80372 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:41:05 2020 +0000 Issue #4 - bug fix in getic.sh for v15 commit 1c85197d7a1beb34f2e3a52969d631d42003e6eb Merge: 67dae409 1d9a1f00 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:27:18 2020 +0000 Issue # 4 - Sync merge branch 'develop' into feature/remove_theia commit 1d9a1f00b73cb3852d352e9a41a15651a99fb656 Merge: 3ed9267b bdbecaa7 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Feb 7 08:11:21 2020 -0500 Merge pull request #18 from lgannoaa/exception_handling Exception handling commit 85deaf78b86184f9b52afe5d68b370ba640c152b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 19:16:18 2020 +0000 Updated resource configs based on C384 and C768 tests commit 4bd0e20300cc2a79e79433b2ec8cdb15c8f01c9e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 11:55:31 2020 -0500 Update README.md commit d9ea1acab54f65a987b32d56587dfd1b6bcd037c Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 6 16:03:11 2020 +0000 Issue #3 - reduce hashes down to minimum 8 characters commit 92d07793ce4be5ac1e12aedb536ace89ec6fcc7b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 15:28:15 2020 +0000 Update to use parallel netcdf libs modified: modulefiles/fv3gfs/enkf_chgres_recenter.wcoss_dell_p3 modified: modulefiles/fv3gfs/enkf_chgres_recenter_nc.hera modified: modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss_dell_p3 modified: modulefiles/fv3gfs/gaussian_sfcanl.hera modified: modulefiles/fv3gfs/gaussian_sfcanl.wcoss_dell_p3 commit a6a28943d08089d96dcf3ea7953ffaf9877e3caa Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 15:10:40 2020 +0000 Point new UPP tag upp_gfsv16_release.v1.0.2, for upgrading with netcdf_parallel 4.7.4, hdf_parallel 1.10.6 and w3emc_para 2.4.0 on Dell and Hera commit cf1c0a5cfec92cebaf648a09f42da435750154b6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 6 13:43:17 2020 +0000 Issue #16: Update EMC_verif-global to tag verif_global_v1.5.0 commit 41ca86bc4001549b98d6b6594288c9752215a1f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 04:19:11 2020 +0000 modified: parm/config/config.base.emc.dyn to point new obsproc_prep to spupport parallel netcdf commit 61b72ba02f920b4817ee199d9cae685e2e3c2234 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 01:10:06 2020 +0000 modified: config.resources commit 17bcdf2a1e0e8f1febfc6d57994a12ac625d9d75 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 4 19:11:42 2020 +0000 Wave changes for running with IAU on commit 3c0ebdde3307741f88e6ecef4f59faaf5efdd5ad Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 4 17:11:56 2020 +0000 modified: modulefiles/module_base.hera and modulefiles/module_base.wcoss_dell_p3 to point to parallel versions of netCDF libs and esmf lib modified: parm/config/config.efcs and parm/config/config.fcst to set chunksizes correctly for high-res and enkf forecasts commit f89bafe55aa0b15ae306dbaff8d97cbd17dc27c5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 3 14:09:33 2020 +0000 Issue #16: update DA checkout to feature/parallel_ncio commit bad2fc1a43a4df12f3f57c4da9e7612402885cd4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Feb 3 05:01:43 2020 +0000 modified: parm/config/config.fcst modified: parm/config/config.fv3 commit 183aac6be0ff71d8368ee139695aeca7caf72464 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Feb 3 04:10:36 2020 +0000 Modified config.resources to use npe_node_max to define computing resouces. Pull over new settings found in the config files of in v16rt2. Made ertain adjustment and cleaned up certain parameters in a few scripts to remove redundance. modified: parm/config/config.anal modified: parm/config/config.base.emc.dyn modified: parm/config/config.efcs modified: parm/config/config.eobs modified: parm/config/config.eupd modified: parm/config/config.fcst modified: parm/config/config.fv3 modified: parm/config/config.gldas modified: parm/config/config.post modified: parm/config/config.resources commit 9d5e0a0348ae7b825629bc4c601b8ee8e726418d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 2 19:04:59 2020 +0000 Github Issue #16 1. add options to workflow scripts to use parallel netcdf for I/O. The application varies with model resolution and computing platform. See config.fcst and exglobal_fcst_nemsfv3gfs.sh for the settings. 2. Update UPP to upp_gfsv16_release.v1.0.1 modified: modulefiles/module_base.hera modified: modulefiles/module_base.wcoss_dell_p3 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh modified: sorc/checkout.sh deleted: parm/config/config.resources.C96 commit 3a66788620477dd3159fe9633a860c799f421eee Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 2 05:17:40 2020 +0000 The following files are no longer used deleted: README.iau deleted: config.anal.iau deleted: config.base.emc.dyn.iau deleted: config.efcs.iau deleted: config.eobs.iau deleted: config.eupd.iau deleted: config.vrfy.iau commit fc2144e64bedc1f7fc7bd302e42baa94bfe06e7f Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:09:00 2020 +0000 issue #15 Remove station height adjustment commit 72cb96233fb636b83ca9f339e23955629c97b82d Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:08:20 2020 +0000 issue #15 Porting bufrsnd to Hera commit 0799ecd1922652d3d17e88dae62fea1c6d8a96e3 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:08:02 2020 +0000 issue #15 Porting bufrsnd to Hera and remove height adjustment commit a0ac43a8f1541ae47f156442a303689e5d74a9ec Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:07:34 2020 +0000 issue #15 Porting bufrsnd to Hera and remove height adjustment commit 85dc2f2486f841e7ad4785e5170c2edd2fbba35e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:04:28 2020 +0000 issue #15 Porting bufrsnd to Hera commit 26d52df758693bde55b047bfb874df4439c6d57a Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:03:20 2020 +0000 issue #15 Modofy driver for test runs commit 0e34bc5f4d38d742a11e3275ee560708c417c37f Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 14:53:37 2020 +0000 port v16b bufrsnf to Hera commit 87d3d18c291af5543de72e38e8dfe310223e1e1e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jan 31 03:53:20 2020 +0000 modified parm/config/config.resources to apply more tasks to gldas aprun_gaussian commit 50b70215096dbc87e0484ed0eea9572238c37432 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 30 14:55:48 2020 +0000 Resource adjustments and fix for restart copying in exglobal commit bdbecaa7220f2462cc75e802570845809ebcfc75 Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jan 29 15:15:52 2020 +0000 Display exception handling message for individual package with location of the log file commit 85b254d8e65318adaeef87ae7187218de59f94c5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 21:18:35 2020 +0000 Adjusting resources for wave component commit 3f858be34da7134a071762376f4c4e69ea73f4a0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:43:02 2020 +0000 Further adjustment to config.efcs for restart_interval for cold start SDATE commit a674d30c8fe1da53c2d8bda5b695a474e8906f6b Merge: 9944f2fe 3fda3e35 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:26:10 2020 +0000 Merge branch 'feature/wave2global' of https://github.com/NOAA-EMC/global-workflow into feature/wave2global commit 9944f2fe15576f0b401996fefe3c910888708e0d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:25:59 2020 +0000 Resource adjustments for C384, restart_interval adjustment for cold start, and fcst dependency update commit b64fd5ff43f88bd5f2d27b0a16fb803eac8aff8c Merge: cf008631 3ed9267b Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:24:37 2020 +0000 Merge branch 'develop' into feature/manage_externals commit cf0086311daaf62ee33df010946d0a0ddc5bc400 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:23:14 2020 +0000 Issue #3 - remove copy of manage_externals under util and add README.md file commit 3fda3e359f66611c77a97ca9c30a6204a36077c3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 14:18:47 2020 +0000 Adjusting output stride on station outputs, adding bulletin output to wavepostsbs using unified wave_outp_spec.sh (removing wave_outp_bull.sh), adjusting wave resources in config.fv3 commit e4bd7d09ef3cc06d14dbfcb07bd3f211d4a5e54c Merge: 99b19f18 b3d88593 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:58:16 2020 +0000 Sync merge with feature/gfsv16b commit 99b19f18e0a01fcf49b442ec66f1aea43b16433c Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:54:46 2020 +0000 Disabling additional wave jobs for later implementation commit c12e87987113fa6f4b543bc0dae61d4259703c03 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Jan 27 19:38:19 2020 +0000 Implement exception handling in build_all script commit bfc7bb0b237d4cf4240551aa8b9c5d025724ac16 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jan 27 19:06:17 2020 +0000 Issue #3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds. commit b3d885930adfc07c67bc8fbe146533868f96aba8 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jan 27 17:54:31 2020 +0000 Issue #1: update gldas workflow dependency to improve parallel throughput commit e216205aec6f481b4e96c8707d485dd2eacfb0e7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Jan 27 00:01:14 2020 +0000 Updating resource config in config.fv3 for running cplwav in c384 with ppn=7,thrd=4; checkout.sh now points to the latest ufs-weather-model develop branch; updated fv3gfs_build.cfg to match ufs-weather-model commit 4db98e694624b62e45417b3bb6c7c771f633cb42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jan 24 17:18:14 2020 +0000 Issue #1 - update EMC_verif-global checkout to tag verif_global_v1.4.1 commit 4d5713d3983c6cc6a8e497e892760752e09f15a0 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 15:51:28 2020 +0000 Testing github commit commit 786806f3cd5d858615f3f74dec78891a2189ee79 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 15:04:16 2020 +0000 Missed file format updates in a few places in config.metp commit 7d0f783a41d8f1c50e9251b54884410e0bb7ad1a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jan 24 14:41:02 2020 +0000 Issue #1 - GFS v16 updates for MOS, checkout, and archive * scripts/run_gfsmos_master.sh.dell - update MOS script to point at MDL gfsmos * sorc/checkout.sh - check out new fv3gfs branch and UPP tag * ush/hpssarch_gen.sh - add loginc to gdas and gfs tarballs commit d0a3b53c8117676c351c50287d4583951c94d42c Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 14:30:29 2020 +0000 init commit for exception handling branch commit c11dfef0f7fb8da2866e6a022ac0ff60044766a7 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 14:07:29 2020 +0000 Update EMC_verif-global tag to verif_global_v1.4.1 commit df2e6b0bd9a2af2107a78c12f9c648a61fe0d5b9 Merge: bc07de02 09e68b48 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 20:00:34 2020 +0000 Sync merge with feature/gfsv16b commit bc07de02af5743194cb9203d0d36e62e9a25b223 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 19:43:12 2020 +0000 Fixed wavepostsbs dependencies commit 4b54c37b425c947e79c4ddc192a6e2f06b8528fa Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 15:04:20 2020 +0000 Turn off cplwav in efcs config and adjusted dependencies for fcst job commit 0ea809c208ce606c957eed4d346a3828d8186010 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jan 23 13:29:56 2020 +0000 Update file format variable in config.metp of online archive files commit b886c848a60871a86bb0b45d024a34368ad1d898 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 22 21:01:34 2020 +0000 Change to base config and update to wave dependencies commit 154b118a7808bfa60abe0620e4bee21cb4faabee Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 22 03:37:24 2020 +0000 Changing WAV_MOD_ID to MDC (model component) tag; updating some paths for wave components in several scripts. Correcting wave_tar bug. commit 0edcb211586f1f96d01f172215568fa7eee3a7a2 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 21 20:15:14 2020 +0000 Several changes to change the sirectory name from to etc. Updates to wavepostsbs. commit c0d7179f34837e40db9ccb1b941ad9f312283a6e Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:37:16 2020 +0000 Add updated env machine files for gfsmetp commit 82e690717d72c7b021c637270108f4bacfb6816d Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:29:23 2020 +0000 Update config.resources for gfsmetp commit 72e8adf1c8a8859786cbbcf1b976640d73c5c867 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:19:31 2020 +0000 Update EMC_verif-global tag checkout to 1.4.0 commit 6872f79f3f9052377ff863da1bbac482548ee0ce Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:14:25 2020 +0000 Add rocoto METplus job script commit 9c94156670bd810561bd2a699648afb946511ea9 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:09:13 2020 +0000 Changes to setup_workflow.py for gfsmetp metatask commit 09e68b4834b0b54552ef0ae3829a41063200fe5f Merge: a49e4e54 3ed9267b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jan 20 22:05:53 2020 +0000 GitHub Issue #1 Merge branch 'develop' at revision 3ed9267 into feature/gfsv16b commit 0ad851882686087fdd21a4a8f88b65dd3960cd1c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 17 17:29:09 2020 +0000 ACCOUNT fix in config.base.emc.dyn and dependency fix to setup_workflow.py commit 80f13fb4b785fbde8e925cfb6deb547297f34e70 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:29:35 2020 +0000 Removing underscore from COM wave directory names commit 39a9df9385631df4a3cba4e6663fc6ab5c3f238d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:08:41 2020 +0000 Changing back waveprep to include ice and currents by default commit c36df4d748bbc2a8dc7b4a044a1f62f637e3ba33 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jan 16 19:43:26 2020 +0000 Updating post sbs script to copy station files to correct directory. commit a49e4e5403b1e16025b2a5890cef3de22627119a Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Thu Jan 16 14:59:08 2020 +0000 Added build script for gfs_util commit f1cd7ab43d24fc576c82ea227cd7d79cc08f4835 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:48:11 2020 +0000 Adding block sourcing config files into wave j-jobs commit b736f8315497bfc29fd77faa9d98bf558ddea919 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:40:16 2020 +0000 Removed config sourcing from rocoto job scripts commit 4f6840b25d85152ea7393a8959619bb4caab9d67 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:38:41 2020 +0000 Removing dependency on log file for wave post sbs commit 429c409799f1999babbfb3653e6f03be66f8fec3 Merge: 3f685fd3 a6905174 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:35:24 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 3f685fd3423add0ba2cfb7c3115a674891c44e55 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:29:58 2020 +0000 Reinstating Ratkos NO NO in build_fv3.sh commit 8f48844906f851a41db742f7686f7e7cae6b95c0 Merge: 5eeaffa1 7c595189 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:12:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit a69051742c5edd0e4d34d178329fc24cacede78a Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:12:20 2020 +0000 Adding supplemental config source to JGLOBAL_FORECAST for wave commit 5eeaffa1c3f4e35fe067b7e229f16f93574bcb86 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:12:08 2020 +0000 Updated GFS drivers commit 7c595189e8c671a7b2eb6363d82020fb9ed58c13 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:09:54 2020 +0000 Github Issue #1 updated JGFS_PGRB2_SPEC_GEMPAK commit 1f5c593705df384608b1f1dd84df9114d5d8a812 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:59:27 2020 +0000 Removing KEEPDATA from JWAVE_POST_SBS commit 5d2f2a21947dfb00762b1085fd267ca959b7fea6 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Wed Jan 15 19:50:00 2020 +0000 Github Issue #1 modified rocoto gempak.sh commit baa06afcecef64faad51bfac3b4fd2c064df3fb5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:32:06 2020 +0000 Changes to update sbs post and reconciling parameters for output post data. commit 8d430ceeac22bb8943bdf2052b85cccc9b621440 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 16:28:13 2020 +0000 GitHub Issue #1 Updated ush,gempak,jobs and docs commit 53f719f63f569bd061bd3cfd3b63d5040a962dea Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 14:19:46 2020 +0000 GitHub Issues #1 Bugzilla ticket 889 fixed bug in rdbfmsua.f commit 8b94a2d6caad3bc5eebfe69bffc5224bebd1856a Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 14:15:16 2020 +0000 GitHub Issues #1 Updated some gfs driver commit ed2317a953992974dc2e61517cfe3d22d3c2d75f Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 05:10:51 2020 +0000 Updated GFS driver commit 3ed9267b2f540694e957ee33a746f00857a5a1a2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 14 19:32:36 2020 +0000 Issue #10 - mid-year update to bufr station list (develop) commit f59fc0c4550a5e8617fb70ca150e91a65de89e18 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Mon Jan 13 20:03:34 2020 +0000 GitHub Issue#1 Revert parm card for AWIPS grid 211 commit 21feab285859881814509d75c794bc4ae4f74a3b Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 22:00:38 2020 +0000 GitHub Issue #1 Updated AWIPS grid 211 commit e292d96010dc1e63f28d2c9d95c5e61776abe0dd Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 21:12:36 2020 +0000 GitHub Issue Updated AWIPS parm card grid#211 commit fcf2d09159f80142364fad616661014e434b2a89 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:55:57 2020 +0000 modify gfs_bufr.sh for generalization commit 528cde1998fa6b341794f4ad15820e8cbc517568 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:55:05 2020 +0000 modify exgfs_postsnd.sh.ecf commit 0b5a056b7c089e428806ceecb36ae0ddd0535060 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:40:21 2020 +0000 Addd 25 bufr stations and all station j,i commit 349c299740b5e1d022faa2d17aa6aa05ed8d7165 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:36:57 2020 +0000 add module nemsio/…

Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py

Squashed commit of the following: commit ce1c78255f4bf8f40c2f116547062c7f1b3832c5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 15 10:25:37 2020 +0000 Issue #1: add fhrgrp and fhrlst back to gfsawips in setup_workflow.py (bugfix) commit 67b33dd15633345e0fd59dd37728c26b36d4c0b3 Merge: c33869da 586fe6ce Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Sep 14 10:34:39 2020 -0400 Merge pull request #130 from JessicaMeixner-NOAA/bugfix/rtofs Bugfix for rtofs commit 586fe6ce19c5fc281dec16be3347d0311f3e99ce Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Mon Sep 14 14:29:01 2020 +0000 adding the line to go back a day for RTOFS for the if not NCO section because RTOFS will not be available until 06 cycle commit c33869dab2704396ea6e569dcd202a2b9866827a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Sep 14 02:34:08 2020 +0000 deleted relocate_mv_nvortex.fd since storm relocation is no longer needed. modified build_tropcy_NEMS.sh to remove references to relocate_mv_nvortex commit 4320bf9fd55757df79b63ed15c2041b1acd0e604 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Sep 12 00:05:38 2020 +0000 Issue #1: correct DA typos in sorc/link_fv3gfs.sh commit 674cd841a7be3a2a9c772cd455ab980195ea9fcc Merge: 46c2404e ad1a9d90 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 15:06:36 2020 -0400 Merge pull request #124 from JessicaMeixner-NOAA/feature/gfsv16b-wave Splitting post jobs for waves commit ad1a9d9044e89b75ec82bb201e35005552d3d177 Merge: 986f8f0b fd687727 Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Fri Sep 11 14:01:35 2020 -0400 Merge pull request #4 from KateFriedman-NOAA/feature/gfsv16b-splitwavepost Sync with feature/gfsv16b and small updates to split wave post changes commit fd687727b2df80f81fabc41b94f808b74e68783c Merge: 986f8f0b fc60e895 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 17:52:30 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-splitwavepost commit fc60e895dea1c123a4b8e02b50df0d0cfa43f77f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 17:45:03 2020 +0000 Increase walltime for new wavepost jobs commit e0dd1097de2c335400a546137569886a838c46ba Merge: 0844b004 46c2404e Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 14:20:15 2020 +0000 Merge branch 'feature/gfsv16b' into feature/gfsv16b-wave commit 46c2404eba485d08e381ef81ebd5ac10c5ad605f Merge: c5546570 9d9b79c9 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 10:15:49 2020 -0400 Merge pull request #128 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen Feature/gfsv16 wave prdgen commit c554657023d82ac934b481593e55406c45157932 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Sep 11 13:59:51 2020 +0000 Issue #1: update name of DA jobs and scripts in accordance with WCOSS Implementation Standards commit 9d9b79c911add71065b0999821772d026609ad62 Merge: cb78f7b8 d3946f90 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Fri Sep 11 13:48:19 2020 +0000 Issue #94 solving a conflict commit cb78f7b839a7b5fd5082f39592e3b450ce059e82 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Fri Sep 11 13:21:41 2020 +0000 Issue #94 add waves-prdgen, ICE->ICEC, Sleep in gempak script commit d3946f9006f433e0a6b2f459aeaa7fd8bf800aff Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 8 14:46:39 2020 +0000 Issue #1: clean up DA sections of link_fv3gfs.sh commit 986f8f0b9858f61d32d337a67efa966a7948aa94 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Sep 4 15:42:25 2020 +0000 fix from Bhavani for having first wave grib file be set as a forecast instead of analysis commit 0844b0043c937925c5ad76b4fad03308483d49b3 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Sep 4 15:42:25 2020 +0000 fix from Bhavani for having first wave grib file be set as a forecast instead of analysis commit 64409b1e9e976b75afd8a3548e7023dce534c4ae Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 3 15:42:23 2020 +0000 Adding missing space to if-block in env files to resolve runtime failure commit 0485442f5876b82de73c47429d3a70f58f0aa263 Merge: 26c84b3c 2006bbcb Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 3 15:37:50 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-wave * upstream/feature/gfsv16b-wave: adding pnt jobs as seperate jobs for env moving definitions of wavempexec and wave_mpmd from jobs to env lowering the resource requirement for wave prep job update module for cdo updates to resources for wave jobs Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py cleaning up wave point post scripts rename wave post script remove gridded so can rename updates to boundary point Remove extra space from line Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes fix typos updating WCOSS work around for CDO, CDO_ROOT is missing from module file adding module use for cdo module on wcoss dell updates for new weights file and adding cdo module for wave prep Adding new wavepostbndpnt and wavepostpnt jobs updating wave post scripts for restructured format updates to JJOBs for wave post point for new structure changing exit 0 to exit number for FATAL errors in ice prep for waves updating error message and exit if there is no current input file update WAVE_PREP so that currents do not check for previous 24 hour so that parallels will be reproducible also deleted unused variable renaming wave job and scripts update jobs for waves Issue #94 - pull in two fixes for wave job setup in free-forecast mode updates for wave scripts to split them, also added updates from GEFS branch to add extra error checking updates from gefs post workflow: updates for re-run case as well as extra error messages commit 26c84b3ca81dec965ab31d00409b537f61174dc1 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Sep 3 14:06:29 2020 +0000 Issue #1: remove pgrb2b.0p25 dependency from gfsawips in setup_workflow.py commit 609e157c2477b662b55bbf3d53999cdd30856bc8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 20:35:28 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.4 and remove HOURLY variable from WAFS configs commit b0bebad6258bd81c0b0c89b559a04d9b059c838e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 20:08:01 2020 +0000 Issue #1 - change wavegempak and waveawipsgridded dependency to match waveawipsbulls and start when wavepostsbs is complete commit 084c89e3d562f8c9977eaa17624646be388f7854 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Sep 2 19:58:37 2020 +0000 Issue #1: set n_sponge=42 in gfs section of config.fcst commit 2006bbcb1e54e3cd5ae0ff2826b6d0b211c1d013 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 19:22:38 2020 +0000 adding pnt jobs as seperate jobs for env commit c61cd59488b64ead77e13b2eb5faeb383d052ea0 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 19:02:21 2020 +0000 moving definitions of wavempexec and wave_mpmd from jobs to env commit 68ed2d670ebe25713554f2165a0bbc7c35fb5030 Merge: 4e7975d2 70abda26 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 17:45:26 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave Conflicts: parm/config/config.resources ush/rocoto/setup_workflow.py ush/rocoto/setup_workflow_fcstonly.py commit 70abda260dc9ab47533d25cd570dd055c4644123 Merge: 0a31d568 52e987ac Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 10:28:22 2020 -0400 Merge pull request #122 from KateFriedman-NOAA/feature/gfsv16b_wavedown Add downstream wave jobs to GFSv16 commit 0a31d568bdacd0fb2d8bc6e1fddb09d2c72d014c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 14:09:57 2020 +0000 Remove unneeded settings from config.post commit 52e987ac67477932e5b034321cf52f1cc756081c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 13:05:42 2020 +0000 Added null DBNROOT to wave awips configs commit b3c7b7379a6ebb53b4d4533b894b1bf36df3c2fd Merge: 074f2782 add6ea0b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 13:02:41 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b_wavedown commit 4e7975d265857e4e634e0c7352f6ed2de1a99336 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Sep 1 22:45:05 2020 +0000 lowering the resource requirement for wave prep job commit add6ea0bae2c56bba2e3d76460771095b98786b1 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 1 19:40:10 2020 +0000 Issue #1: rename enkf_chgres_recenter executables in accordance with WCOSS Implementation Standards commit 8a7e8d9944b8727da91bfb28bbfe44958f0aeb65 Merge: 4c9978a8 595edcfa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 15:00:08 2020 -0400 Merge pull request #121 from KateFriedman-NOAA/feature/gfsv16b-wafs Adding WAFS jobs to GFSv16 commit 4c9978a8b0a98527d7c78a3da0a0a55e39cefed0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 18:48:44 2020 +0000 modified: checkout.sh to use gldas_gfsv16_release.v1.6.0 commit 595edcfaaf1372889c8d569e01ec4dfefb51c469 Merge: 8a593c8d 06bda7de Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 17:30:08 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs commit ada0fb3155a57bdba074c84e1ab3d73eabb0e2f4 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Sep 1 17:18:27 2020 +0000 update module for cdo commit 074f2782438471740453e356b856a4756e59c858 Merge: a1a3d69b 8a593c8d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:30:56 2020 +0000 Sync with WAFS branch commit a1a3d69ba40564f550053b99b4328ba41c7cc45d Merge: 249b6ef7 06bda7de Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:22:20 2020 +0000 Sync merge with feature/gfsv16b commit 8a593c8df03d8a879c5488fbd671fef94f5d867d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:09:49 2020 +0000 Update to WAFS tag and added SENDDBN_NTC to both base configs commit 5270ed831c0b3c428736cbd8a789a4d3cfdcc0fe Merge: 95ec3329 eabda84f Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:03:53 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs commit 06bda7dec74831951034b72c83abbb2d994ee539 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 14:02:44 2020 +0000 modified: link_fv3gfs.sh to not link or copy 0readme fix_chem fix_fv3 fix_sfc_climo which are not used by GFS.v16 and are of large size commit eabda84f97c11251f672d95bb604ad0c50e8da18 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 13:48:11 2020 +0000 modified: link_fv3gfs.sh to remove chgres_cube.fd and chgres_cube.fd in sorc/link_fv3gfs.sh commit 223492bf6c56c0491c0034dc1d4a0a3e6e97a607 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 03:59:53 2020 +0000 modified: link_fv3gfs.sh to allow "fix" directories to be removed before rerunning link_fv3gfs.sh for RUN_ENVIR=nco case commit 95ec3329e72a54b0dabdccdecd467972c4914dcd Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 31 18:57:32 2020 +0000 Added WAFS jobs to free-forecast mode, updates for extending WAFS to fh120, and two bug fixes in link_fv3gfs.sh and hpssarch_gen.sh commit 6f660d9a9a5758f3d74f87f170a95a26ca0c0e6a Merge: 8da41916 3282a899 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 31 17:58:55 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs commit 3282a8996ab0510699932a53897b87730b2cc492 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 31 17:47:37 2020 +0000 Renamed global-workflow-owned ex-scripts to remove ecf extension and updated other scripts which call those ex-scripts commit 9cde3a41f34d0c2618e8fb06ff1276cec5378ef5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 18:46:57 2020 +0000 Remove UFS_UTILS ecf extensions commit f7a92dbc1c3ad822d3b8e567967e91384631288d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Aug 28 18:09:26 2020 +0000 Issue #1: (1) update earc.sh directory removal to be consistent with arch.sh, (2) update config files to be consistent with EMC real-time GFS v16 parallel commit 249b6ef761fb41b5d102b282fccedeb827192dff Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:52:54 2020 +0000 Remove ecf script name extensions from downstream wave scripts commit 004a29f39204314159d2cbd028950cfaba07cf33 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:50:03 2020 +0000 Add new downstream wave jobs to workflow commit 8da4191644ff55f46e8f394e4e1d29641d3c117c Merge: 8f97726a 6319bda4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:42:11 2020 +0000 Sync merge with feature/gfsv16b commit 8f97726a4170d56dcaf6732ae141fae9aaebfd8d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:39:50 2020 +0000 Add new downstream WAFS jobs commit 6319bda47548873acb8859d9a47d2ac6a6ef4c67 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 15:41:55 2020 +0000 Issue #1 - update GLDAS and UPP workflow files for removal of ecf script extension commit 8f7615c76f76611d748246a80d9286de7c4d3295 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Aug 27 20:53:25 2020 +0000 Issue #1: remove ".ecf" suffix from DA scripts referenced in sorc/link_fv3gfs.sh commit af754d1fa0aa4a521fcd5b4fc04eaa88d475dbff Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Aug 27 20:47:14 2020 +0000 Issue #1: remove ".ecf" extension from DA exscripts (as per WCOSS Implementation Standards) referenced from parm/config files commit a6e91b48b7024c83491fd1f93c6d7df8e3301af5 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 27 20:25:45 2020 +0000 updates to resources for wave jobs commit f0b9a98973b7983eadab51c7009723b5d0b4a564 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 26 23:04:02 2020 +0000 Issue #1: update name of DA enkf chgres script in config.echgres commit 01f33c498bf0b5c0d48486cd04dab9c93c721906 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 26 20:58:29 2020 +0000 Issue #1: Rename DA enkf chgres job and script as per EE2 guidance commit 7d3f37819aba17dc794d10f7453061802779b435 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 26 18:35:59 2020 +0000 Workflow changes for wave gempak and awips downstream jobs commit 485632eafe37c1866011af1bd0a601fb1c7adc4c Merge: 2946baad e191fd4b Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Wed Aug 26 11:49:40 2020 -0400 Merge pull request #3 from KateFriedman-NOAA/feature/gfsv16b-wave Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py commit e191fd4bb87af787feab486bf072fe4dce7f12f4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 26 15:47:49 2020 +0000 Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py commit 4641a72e1ced493c7ec5d837a3093908e388b5df Merge: a1b08c92 25ae4899 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Aug 26 11:33:23 2020 -0400 Merge pull request #119 from GeorgeGayno-NOAA/feature/gfsv16b enkf_chgres_recenter_nc.fd - Remove hard-coded vertical levels. commit 25ae4899cee3dc3aeff1e36f0ac1d0b0773ca2f9 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Aug 26 14:25:36 2020 +0000 feature/gfsv16b: Add Cory's updates to build 'enkf_chgres_recenter_nc' on Cray. Issue #102. commit 2946baad88d908b32793f542cab42f0c89adf009 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Aug 26 13:44:06 2020 +0000 cleaning up wave point post scripts commit 3590e9a45e2b13b22ff3c3d4827907ddcf55eebf Merge: 727c3ffd a1b08c92 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Aug 25 20:20:17 2020 +0000 feature/gfsv16b: Merge updates from authoratative feature/gfsv16b branch. Issue #112. commit a1b08c92892278453f25c2530f8b8fb968af9a34 Merge: 45ad029b ce3816d3 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 16:01:57 2020 -0400 Merge pull request #116 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen Feature/gfsv16 wave prdgen commit ce3816d3e88b8d2de7472a214e66cb54aceca9a6 Merge: b0c91610 45ad029b Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Tue Aug 25 19:55:53 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen Issue #94 Adding prdgen for waves commit 90181842fbb7a22479f12d3a67bcdc8fa4b8f669 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 25 19:02:22 2020 +0000 rename wave post script commit 1f15be0a8207d3117200bcc145a5ae66b7445ec3 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 25 19:01:41 2020 +0000 remove gridded so can rename commit 1fc5b368fe0cd438e2202b62de7753b7efed7af6 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 25 19:00:20 2020 +0000 updates to boundary point commit f0e3ae5c2cd441673a4a670618e87f050a12c9e9 Merge: 98d6c163 b74b21e7 Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Tue Aug 25 14:15:57 2020 -0400 Merge pull request #2 from KateFriedman-NOAA/feature/gfsv16b-wave Feature/gfsv16b wave commit b74b21e71edbb62207ccfcafe4c6ed5b6d301cfe Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 18:14:15 2020 +0000 Remove extra space from line commit 25e2cc4596213b39d2a3dc3ee8afda4a86e10d38 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 18:12:04 2020 +0000 Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes commit 45ad029bad4367961e5eff987f27226b0ac78d5a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Aug 25 13:40:45 2020 +0000 Issue #1: several minor changes * Externals.cfg and sorc/checkout.sh: update to tag verif_global_v1.10.1 * jobs/rocoto/arch.sh: update ARCDIR cp to use new path to tracker output * scripts/run_gfsmos_master.sh.dell: remove module purge from mos driver script commit 0a85a36ef0784bebf96d2f97c24dd4c642ac23f1 Merge: d5861551 5190efb1 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 09:20:42 2020 -0400 Merge pull request #118 from GuangPingLou-NOAA/feature/gfsv16b Issue #117 Modufy Bufr station Hilo's grid point representation commit 5190efb119c6eec6a7c67d90327dee4666307541 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Aug 25 12:30:45 2020 +0000 Issue #117 Modufy Bufr station Hilo's grid point representation commit 98d6c16336e5b0a3241174c54b7631667a4f919d Merge: 0eacf5e2 32bd57ef Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 22:27:39 2020 +0000 Merge branch 'feature/gfsv16b-wave' of github.com:JessicaMeixner-NOAA/global-workflow into feature/gfsv16b-wave commit 0eacf5e21c3149d2d922b4c2495e48fb2355e639 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 22:27:28 2020 +0000 fix typos commit b0c9161061302ccf4b890cceabe5b4eaecb67e61 Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 22:25:05 2020 +0000 Issue #94 changing native by interpolated grids for gempak commit 8a68d3c6d6996f389609d5961f32f0db116797d1 Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 21:47:44 2020 +0000 Issue #94 removing the load of modulefiles and sending set.pdy to j-jobs commit 32bd57ef2b390dbe73a744188a40ca4c42c306fe Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 20:35:39 2020 +0000 updating WCOSS work around for CDO, CDO_ROOT is missing from module file commit a2d06bb0bf82ee48899cb26ea9abf2331b543107 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 18:55:02 2020 +0000 adding module use for cdo module on wcoss dell commit e5c9f037bd82ed4bc72cf11241d7c053160ff5b9 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 18:29:36 2020 +0000 updates for new weights file and adding cdo module for wave prep commit 96655fbe5b5daf130d4a9a458ce47059c047376a Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 16:56:37 2020 +0000 Issue #94 removing modulefiles load from j-jobs commit 7f9344f777075ce3220d9a9fccba74c07e4f40e2 Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 14:32:26 2020 +0000 Issue #94 Solving reviewers comments commit c9598a3207bb06cbd7d2619d97f723f6511da9a4 Merge: bf97710b 92a2a43d Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Mon Aug 24 10:12:43 2020 -0400 Merge pull request #1 from KateFriedman-NOAA/feature/gfsv16b-wave Adding new wavepostbndpnt and wavepostpnt jobs commit 92a2a43db190982944b4166b929a791a1b0b0750 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 24 14:06:23 2020 +0000 Adding new wavepostbndpnt and wavepostpnt jobs commit bf97710bece30195679740b0de2b32e0adc6c3c6 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Fri Aug 21 00:20:56 2020 +0000 updating wave post scripts for restructured format commit a914521cec478667191b365e2a2a62e3553e0ff7 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 23:52:47 2020 +0000 updates to JJOBs for wave post point for new structure commit 1f195f8d432072f4e4f66406ea6b09256a185d2b Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 15:20:28 2020 +0000 changing exit 0 to exit number for FATAL errors in ice prep for waves commit f836a7869dbb88badd93fcd9d08314284eee4f96 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 15:17:28 2020 +0000 updating error message and exit if there is no current input file commit 529cc3692f4fc003295584e761279be3c9405b68 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 14:50:50 2020 +0000 update WAVE_PREP so that currents do not check for previous 24 hour so that parallels will be reproducible also deleted unused variable commit 57c4258ba73778fe95118ebfae98c4bbf012ae37 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 14:09:22 2020 +0000 renaming wave job and scripts commit 1626cb2f90bfea5663f198cfc2ac2916a9200e1a Merge: da292216 d5861551 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 14:02:54 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-splitwavepost commit da2922163922f4b4b14dba78dba36e9eced3a2c5 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 13:50:15 2020 +0000 update jobs for waves commit a1c456f267ddf701aa47ad33fd231a2f1ae0bf99 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Aug 19 20:09:47 2020 +0000 Issue #94 renaming the J-jobs commit 036617c8a9b5da765b82c276f7b087aa4e16d679 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Aug 19 14:24:01 2020 +0000 Issue #94 Updating the modulefiles for waves-prdgen commit d5861551ae5b1fe2c2b00802159a42f7fde06357 Merge: 9b923ac3 0e0699aa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Aug 19 09:49:08 2020 -0400 Merge pull request #109 from NOAA-EMC/feature/gfsv16b-restructure GFSv16 restructure for new $COMPONENT subfolder commit 1e76093c8554c3ccb87a7ed243f738f5763ca5da Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Aug 19 13:47:44 2020 +0000 Issue #94 adding waves-prdgen to gfsv16 commit 0e0699aac7cb00988c999546dcdf3a52b11706e3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 19 13:47:29 2020 +0000 Issue #94 - fix to messed up shebang in setup_expt_fcstonly.py commit c7a708fd54ffe60c6259f35c4230e6e73ecd6f77 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Tue Aug 18 21:16:19 2020 +0000 Issue #94 adding waves-prdgen for gfsv16 commit 0b2744e53a35c570178b7e6cd7ede72b6255c579 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Aug 14 17:36:31 2020 +0000 Issue #94 - pull in two fixes for wave job setup in free-forecast mode commit 4888001e76d24277b3a75d1d520945383f49d456 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Fri Aug 14 18:55:40 2020 +0000 updates for wave scripts to split them, also added updates from GEFS branch to add extra error checking commit 00dc1973010b68e65e176c90a1eeaef359b7beae Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Aug 14 17:36:31 2020 +0000 Issue #94 - pull in two fixes for wave job setup in free-forecast mode commit fe849e918b30e6a9ca22ebe1a81e350afc4ed6cf Merge: 0c06cda7 9b923ac3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Aug 13 18:49:52 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit 9b923ac308841d7accfc6ed2a4ef9733dce2305e Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Aug 13 18:37:51 2020 +0000 Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal commit 0c06cda7dd667e936e8aa71fc1c584a4839094ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 10 18:50:44 2020 +0000 Issue #94 - update CFP module version on WCOSS-Dell commit b73d25224d8208291048b774a91497928b051713 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 10 17:58:55 2020 +0000 Issue #94 - update WCOSS-Dell module versions to prod_util and EnvVars commit 485ee56c1e772e8efa944ee9a3f350130d49a718 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 10 13:00:42 2020 +0000 Issue #94 - fix AWIPS file dependency commit bdaa28fbdc2372ed85320a4b044a33d350e2e7be Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 7 13:34:22 2020 +0000 Issue #94 - updates for FSU tracker commit 4cee6f65467c34e171ed3e0bdc72458a875e5e21 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 5 17:14:04 2020 +0000 Issue #94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post commit 563d2931378c3d6276212cc9c4e2a4e9a286589c Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 4 18:19:47 2020 +0000 Issue #94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh commit 8a1fea478bcfdec3ad436e77fdfe8c601a050c77 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 30 18:27:57 2020 +0000 Issue #94 - move UFS_UTILS link script step from build_ufs_utils.sh to link_fv3gfs.sh based on feedback from GEFS team commit f54d938ac8faf3c5d0362770b645dcef57b43c30 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 29 14:28:03 2020 +0000 Issue #94 - reverting GSI and EMC_gfs_wafs checkouts back to authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available commit d3866af6cc8060f88b3bd780b7f6a6f52a8ecba0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 29 13:39:07 2020 +0000 Issue #94 - add default to fhmax in vrfy.sh for when prior tasks disabled and set new path to restructured gfsmos commit 9c2791ed037d62f35aa33875c20de8ac3f823337 Merge: e8a714b2 d1751309 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 27 14:44:59 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit e8a714b2fa20cce87ed018b3a9215bef37ee0d10 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 27 14:37:34 2020 +0000 Issue #94 - retire BASE_SVN commit 5867d4b3de7b6ee7d8f913d573b4a0f44d973320 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Fri Jul 24 15:00:41 2020 +0000 updates from gefs post workflow: updates for re-run case as well as extra error messages commit 03daf01d440e702deccfcd246db069783f2c513d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jul 24 14:14:25 2020 +0000 Issue #94 - removing new install script, will introduce via another branch, needs more testing commit 9c0765cec06ea0f80528cba722884a4971beb345 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jul 24 14:08:36 2020 +0000 Issue #94 - add to gempak scripts and cleanup based on PR feedback commit fb70d6fb7a2407bd17c2c587224e66401a6cf1c0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 23 14:35:56 2020 +0000 Issue #94 - updating GLDAS and EMC_post tags in Externals.cfg commit 3bfdc01419b1ea8748f8ce7ebcf00ac6b520f8d7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 23 14:34:28 2020 +0000 Reverting link_fv3gfs.sh, will commit in different changeset commit d1751309fc1999cdc4fdbc603e429ee61fbcf38c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jul 23 11:20:15 2020 +0000 Issue #1: refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env commit 821c93cae54d9fa24887cbe2072df4f63aeadb7d Merge: 95ce8235 145f8105 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jul 21 17:15:43 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit 95ce823552c20aa15426c4c98feb3c7d147ec89e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jul 21 14:10:09 2020 +0000 Issue #94 - new GLDAS tag with atmos directory commit 145f81056802cb7246a50f7951c2e191a994032f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jul 20 21:09:40 2020 +0000 Issue #1: add enkf member sfcf006.nc to enkf tarballs commit ab89088d3a59ee5d5389fa8e527e0444692c1542 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 20 19:07:02 2020 +0000 Issue #94 - component checkout updates to use forks and new UPP tag commit 4eec6641424d3947ae792f632f9b401bb569173a Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 20 13:31:23 2020 +0000 Issue #94 - fix dirpath in ush/hpssarch_gen.sh commit 727c3ffdeee5b77e65b6665b2cf34b6a30736bbc Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jul 17 18:27:26 2020 +0000 feature/gfsv16b This commit references #102. Some cleanup to enkf_chgres_recenter_nc. commit d0378245016ba506b9e57a35dcaed8ce10830a9a Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jul 17 15:59:59 2020 +0000 feature/gfsv16b This commit references #102. Initial updates to enkf_chgres_recenter_nc to output any number of vertical levels. Turn off horizontal interpolation if input and output grids are the same. commit 273c5353bc310b22459fe605662c07922a41e4f4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 16 17:52:43 2020 +0000 Issue #94 - revert RSTDIR_WAVE if-block compression to retain breakpoint restarting commit 3d9f0dc81a63b5d1b54981314fac36a82119e811 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 16 17:19:21 2020 +0000 Issue #94 - remove COMPONENTatmos and COMPONENTwave, use COMIN[COMOUT]atmos[wave] instead commit 19d3f72b5f6f1ec145cf95e47c1fe9ca970d40cb Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 16 16:05:56 2020 +0000 Issue #94 - updates to wave scripts based on NCO feedback commit 0056b413a65aea9700561c5a9b07946fb34be6b5 Merge: 987d8cf5 d7425d02 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 16 13:35:13 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit 987d8cf5621e8c302d0f9a7941f4d74222fbf218 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 15 17:50:34 2020 +0000 Issue #94 - added and [wave] back in after feedback from Steven Earle, also renamed the wave scripts to match the correct convention commit 49825b3b93080b70b56752477a9406e1765ecdf3 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Tue Jul 14 23:04:08 2020 +0000 GitHub Issue#94 update gempak's ush scripts commit d7425d02bb9027fe3ea5ceb31d515d70dddb4ec4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 14 19:50:54 2020 +0000 Revert "modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos" This reverts commit 49772711c37d74740427c241a477afe21ee62d7c. commit 49772711c37d74740427c241a477afe21ee62d7c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 14 19:45:32 2020 +0000 modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos commit 8b0f57fdfd4a8710e176f0035356fb01d781dd70 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Jul 13 23:43:55 2020 +0000 modified: ../Externals.cfg and checkout.sh to check out UPP tag tag upp_gfsv16_release.v1.0.10 and model tag GFS.v16.0.10 Updated the algorithm used to compute CAPE and CIN in UPP. The computation is now bounded from the surface up to 1 hPa instead of the model top to avoid producing erroneous large CAPE and CIN values. commit 37e0f57d948fa98c66fcc9d9695de2769a4a38d2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 13 17:26:52 2020 +0000 Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh commit 663542ea2219eae322437058693cae3ade14e125 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jul 10 20:01:17 2020 +0000 Issue #94 - fix dependencies with in the path commit 866c4c4cf1a2cd177fed81396ddb40e657e8d55b Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jul 10 15:22:33 2020 +0000 Issue #94 - convert variables into hard-coded values per feedback commit d57fc02801232de745e1c66b6cb0b459218dc042 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jul 8 22:59:35 2020 +0000 modified: checkout.sh to checkout model tag GFS.v16.0.9 1. WW3 update: write all restart files in a sub-directory restart_wave 2. Port production/GFS.v16 to Orion (#129) * Update FV3 submodule * Update NEMS submodule * Add 'ulimit -s unlimited' to Orion job card template * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS' * Update modulefiles/orion.intel/fv3 * Update regression test configuration on Orion (for gfs_v16) * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance) * Update NEMS submodule (point to NOAA-EMC/NEMS) commit 233f9f615ab1d5cee29c45143655978112bb79fe Merge: 506e3bf4 ae7dbdb2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 8 19:44:40 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit 506e3bf4d627093b06bc0a2d5cac63f99767742f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 8 17:43:14 2020 +0000 Issue #94 - initial add of COMPONENTatmos variable to scripts commit ae7dbdb2a37daabaa178b8924bad22684a673d4e Merge: 6e73de0c 58fb7954 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Jul 8 11:30:07 2020 -0400 Merge pull request #96 from NOAA-EMC/feature/gfsv16b_restart modified: exglobal_fcst_nemsfv3gfs.sh etc to enable WW3 break-point restart capability commit 58fb79548b2ac34a477b4520ca99ce32280b00fd Merge: 4a1cf2b6 6e73de0c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 7 15:58:25 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 6e73de0ce5cd82c9e97d8078dd1ddd253f05a258 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 7 15:03:09 2020 +0000 Issue #1: set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA" commit 22ad770016b8a61bb672f1f76d62cb3d133f247c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 7 13:47:26 2020 +0000 Issue #1: update sorc/checkout.sh to checkout verif_global_v1.9.0 commit 4a1cf2b6f45a76b91fbfa048def2cd647598e154 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Jul 6 23:59:03 2020 +0000 further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle as well commit 5fe1a217d28e6710502b9524d3e3cce035364c37 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Jul 4 19:43:29 2020 +0000 modified: jobs/JGLOBAL_FORECAST parm/config/config.wave scripts/exglobal_fcst_nemsfv3gfs.sh add WW3 break-point restart capability and clean up forecast script. commit 3fe6f9fc3aff9cff75aa6179cc545e635d28f312 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jun 29 19:44:12 2020 +0000 Issue #94 - commit initial version of new installation script commit 30e56f2e84c6f1a66dc73db53cabc898b657374c Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jun 29 19:41:31 2020 +0000 Issue #94 - generalization updates to link script - change 'nco' mode to 'prod' mode - change 'emc' mode to 'dev' mode - update machine values to match target names commit 28b1faf03c5ad12e4e9a44f1d02c754f1441ebc7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:31:18 2020 +0000 modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" commit 61f4a52e299482687d84ef6686e6a65f64fe57f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:21:33 2020 +0000 corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt commit b10a9306b732e543d2be3b932d556ebcdcbe8a5e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 25 20:25:30 2020 +0000 modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} commit b8192e54988f2fb2f4cda0510af02a090dfdda2e Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 25 18:20:01 2020 +0000 Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts commit e599c368a2d55018e4a1567717efd7ffa09f14d9 Merge: 99277ae3 1e56eddb Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jun 24 14:16:22 2020 -0400 Merge pull request #93 from JessicaMeixner-NOAA/bugfix/exiterr fix for exiting properly with error for wave prep/init scripts commit 1e56eddb055b1414385e276ac73255d3ede9e9e9 Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Date: Wed Jun 24 12:36:53 2020 -0500 fix for exiting properly with error for wave prep/init scripts commit 99277ae34ef50454fa15e7e28b564c2e34e3406c Merge: 14dd3c94 4f8d5a5f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5f28c7120905fe36e9254f0199da986188 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c94938b0e69601e25a42104b2fc23944ebd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues #136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue #152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002425a03905bfc6ef63d3f43a6813814497 Merge: df89cc80 dd599eaa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request #91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599eaa4f379e1eb8fc5e057f7904b0e6290d48 Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df89cc800d3c479c132a5e679a2562af91b32f62 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28365377f0ceed87ff8b4b9a9b4b6e91368 Merge: 1dd83b81 965ff420 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff4203f132c6b032398a7a56494329714247c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue #85: update DA checkout to point at release/gfsda.v16.0.0 commit 71d714119960feed1f0807708cdf85677ab81d73 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue #85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b818e9f2babbd11b762951721cf2a4c415e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4d009047251c535eea6fdc5958e58e68f7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0715a29e52e4d7133a8259c492229a5c22 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5c680d54297101fae573579be24411a94a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed4119b067905f5a4bf47656557f2211883 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue #85: add cfp option to chgresfcst; enable threads with chgresfcst commit d8782697fa698c00daa242a656246cf5f5d9b537 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621727701e9526feccc7ce8ebd43be31860f Merge: 22b735d3 295cd05f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request #84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05f306e4d70d09880a41fd60fadce74bab3 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 22b735d310413989568dca4b30d19eadcd4c3fdb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 12 20:06:49 2020 +0000 modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. commit 10ce1d4140c7c0fe795ded39e1fa550e0c202c59 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Jun 11 18:42:22 2020 +0000 Issue #1 - Hotfix to update anaconda module contrib path on Hera commit 58d1139c196f92bd4bb149008a8d61eb6457fb3c Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60197c38acb724cfdf4a30a20417a6618b4 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b2d43acd13a08bf1d5ab2251db90a11d32 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit 4405a2c74c8b5a40ee6edd7b4c2faba9bd41b59c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 10 14:36:03 2020 +0000 Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base commit fc3066c2b7a5edd9f0d510b88f8542b07b8a8589 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow commit 9f2e4ecfe5799e13a4f6b9e80f7ff3e7b4a3633c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:34:07 2020 +0000 Issue #1: correct typo in scripts/exwave_prep.sh commit 5a8b8f2e80532b7e446c51a69dcb83c7a212395d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:15:31 2020 +0000 Issue #1: check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS commit a7306aa93d537da5b165297e0dc34ba88856d4c7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 7 23:22:53 2020 +0000 modified: jobs/rocoto/post.sh wait for 5 minutes if forecast history file does not exist before exit modified: modulefiles/module_base.hera use GV's temporal build of netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA modified: parm/config/config.base.emc.dyn add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave modified: parm/config/config.fcst -- fix a bug related to setting npe_wav for gfsfcst. if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi -- set io_layout="4,4" for writing gfs restart files modified: parm/config/config.wave set WAVE restart frequency based on restart_interval_gfs (by H. Alves). commit 1082885b082e8a837aef095deb6a3343fca26cb3 Merge: 968b9860 bf5a5c44 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 20:26:47 2020 -0400 Merge pull request #83 from NOAA-EMC/feature/gfsv16b_restart revive GFS forecast break-point restart capability with IAU turned on commit bf5a5c44bdebff5663225e9e9548ba83f498f7cd Merge: b27a01db 968b9860 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 23:36:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 968b98609fe2016518f3adcc6b178bdca0b73bcf Merge: 9b36cfde dc512dd6 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:20:53 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 9b36cfde2032e9296cc7567704e1274560b2897e Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:12:56 2020 +0000 Unify output path in gfs_bfr2gpk.sh commit 7675368c3f7f3942b7f8a57bad4c29a38cef48fa Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:11:23 2020 +0000 remove station elevation adjustment to T,Q and evaporation bug fix commit dc512dd68df088361c340ac01ec3c8130707ffd1 Merge: a7b25a3b 987c32af Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 12:55:33 2020 -0400 Merge pull request #82 from NOAA-EMC/feature/gfsv16b_wavehera Adjustment to wave workflow for running wave component on Hera commit 987c32af7c7e94c53f50d20e1ad3c8b27e2c9afb Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Thu Jun 4 12:08:05 2020 -0400 Updating checkout to ufs-weather-model GFS.v16.0.5 commit a7b25a3bb0b7b5f1b8a15204ff1e7c061ea1199a Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jun 4 14:59:22 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0 commit 0acee674759a5e2c8fbd4ec7b1cdd0459f95e2bd Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 3 20:10:09 2020 +0000 Issue #1: remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github commit b27a01db1516f9aa229e75957885ffa2125d31d6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 16:58:29 2020 +0000 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh GFS forecast restrat capability from a breakpoint is no longer working with IAU turned on. This function has been overhauled to make it more general and works for cases with and without IAU commit ba895481be53906878f58c2998a398bc59870ea2 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Jun 3 09:59:35 2020 -0400 Update JWAVE_PREP Removing lines using for testing presence of files while debugging. commit bb79d7a33c423770f4972c9c643c5dfa7fb0f3be Author: wx20ha <henrique.alves@noaa.gov> Date: Wed Jun 3 02:45:33 2020 +0000 Fixing a few minor bugs in wave_tar.sh after testing on WCOSS commit 8dc2e255e77a55c0f7d90a5018f769ade1e83a9f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 01:41:18 2020 +0000 add new file: run_gfsmos_master.sh.hera commit 3393cac802b289cb9b6867c003ff27ef1711327a Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu May 28 00:01:51 2020 +0000 Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep. commit 32c5f29b62cf747662909ff50a6bf8f327127a09 Merge: 49abb906 e87b5a18 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:40:34 2020 +0000 Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera commit 49abb9068effc5aeeba8f861f44207b67ff442c9 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:36:12 2020 +0000 Adding comment indicating how to regenerate cdo interpolation weights. commit e87b5a18f9dbad2230b9d3324f0c48a7b25d9b62 Author: wx20ha <henrique.alves@noaa.gov> Date: Wed May 27 02:01:57 2020 +0000 JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera. commit 70d71310132813c1066a9b0f881ef686602a23c4 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:39:33 2020 +0000 Issue #1: remove "_break" from commented out lines in config.anal and config.prep. "_break" will cause failue if line active commit 914cb8dff96e45e690c8e1a2932c8d846afb1655 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:37:27 2020 +0000 Issue #1: correct typo in parm/config/config.anal commit 2e12e63b13533a8a1b741bf55cbbaba49beb14cc Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 19:18:57 2020 +0000 Issue #1: update config.anal logic to point ABIBF at the correct GDA directory commit 38cd82133b64af289648ca5e88fde1ac3dcaeab0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 18:04:59 2020 +0000 Issue #1: update config files * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612) * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post) * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error commit 0dff61f103bab78f9d2426599f976dc318eff4e0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 25 03:08:27 2020 +0000 modified: config.fv3 to reduce tasks assigned to the WAVE component. 70 tasks at C768 is adequate for wave. commit 20ef779fd90a267affc0e80ae1f8a3f64afd2f8d Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Fri May 22 19:52:55 2020 +0000 Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera commit e248236b233b6bcf2dc008006a82ccd459d7e3f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 22 15:23:59 2020 +0000 modified: config.fcst to set if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then ... lheatstrg=".false." commit 96460e6e5f4b09b9fd10d39550bf022dc62c37ab Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 22 13:02:06 2020 +0000 Issue #1: replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files commit 7222f84041f2a2f221e85d6543657f229408328c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu May 21 14:09:36 2020 +0000 modified: checkout.sh to check out modle tag GFS.v16.0.4. changes include: 1. Remove constraints on mixing length and background diffusitivity over inversion layers on land 2. Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce cold bias in the lower tropospehre 3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in the upper atmospehre. commit 4fa08a77e59660f4b58279375a83d179c891b385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed May 20 01:20:21 2020 +0000 modified: HERA.env to add export CFP_MP="YES" # For analdiag with SLURM commit 9f7df9d3552fd971cde09148bc392ad93bf104e0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 18 15:06:19 2020 +0000 modified: checkout.sh to check out upp_gfsv16_release.v1.0.8 1) Add configuration for Orion. 2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset. 3) Remove SPFH at isobaric levels from pgrb2b dataset. commit 5e4a1335ef3feb0242245b5661f22650a0a2e576 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri May 15 13:08:25 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2

Squashed commit of the following: commit 636ded675b81b15e8b3af2a211edf44f17972cf0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 19:23:16 2020 +0000 Issue #1 - add wtime_fcst_gfs time of 4hrs for C384 commit 4007f116adcde8372e590489d0faa0181babbc15 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 18:29:15 2020 +0000 Issue #1 - fix firstcyc queue bug in workflow_utils.py on WCOSS commit ebdb058fd138a7aa408d69c967747686ea5b77d9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 13:23:05 2020 -0500 Issue #1 - resource updates from low res testing - set io_layout to "1,1" for low res gfs in config.fcst - set npe_wav[_gfs] to 140 for all resolutions, same wave grid - increase nth_fv3 to 4 for C192 and C384 - set smaller walltime for gfsfcst when resolutions less than C768 commit 3f0ab6ff2dd4ca42a45e68972b1936d398b32097 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 17:55:18 2020 +0000 Issue #1 - increase C768 npe_eobs to 200 for Hera nodes with less memory commit d5b69c49ddbd03982db79f09707a49d01ef0b443 Merge: 4ebdd230 794e6655 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:56:27 2020 +0000 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - pull in corrected npe_eobs values in config.resources Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 4ebdd230c121a3c839829aa4ef855d80eb462549 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:53:46 2020 +0000 Add UPP netcdf module library load to HERA.env to resolve runtime netcdf version mismatch commit 794e6655cb227973e47b2373d0e4c97bf297479e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 16:45:58 2020 +0000 Issue #1 - pull in corrected npe_eobs values in config.resources commit 1d0cad425b1e163377bba8ace6622bbbb2d81de0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:24:55 2020 +0000 Issue #1 - add parm mon folder to ignore list and move parm section of ignore list up commit d632c87a8f2ce85d54fa45da14aa09f91a0ec680 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:20:31 2020 +0000 Issue #1 - add FDATE to config.base commit 22d4118f4bc7853fa81f6505fd9aaf5bc6dab4f8 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:12:29 2020 +0000 Issue #1 - save GFSv16 hand-off resource settings into new static nco configs commit 6fd73d7fdf40b291ff49193b606538b540e46139 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:11:37 2020 +0000 Issue #1 - new FV3 tag that builds on Hera/Orion and update for building/running high res system on Hera commit 484550c13d8ef957478f20afd6e722f7f610bb8f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Oct 16 15:40:35 2020 +0000 Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 58dcf6d961f7478fec64a850e7bcd19ffd8f3741 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 15 15:08:38 2020 -0500 Update .gitignore for script renaming and removed external files commit e3f8df65082853baa5a22ed3b242efdae66d40ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 15 11:59:58 2020 -0500 Add wave env updates into ORION.env, increase waveinit tasks, and update resources for analysis and efcs walltimes commit e5e7cf1ea61d99080ec95b446c1bee45a57321a3 Merge: a1a7ac94 4b2d26db Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 13 14:25:56 2020 -0500 Sync merge with release/gfsv16.0.0 branch commit 4b2d26db3b9b66ecfdd4756bfcddb6e16f255b03 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 13 17:41:24 2020 +0000 Issue #1 - adjust WAFS dependencies to wait for f036 post output commit 9ef1999270e05c1ff5bae5ea5f737d9474c98b3d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Oct 9 19:27:09 2020 +0000 Issue #1 - adding release notes for GFSv16 commit bf21010067bf7587be93229a979da347278fd7eb Merge: d5e8be98 31563a59 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Oct 9 18:15:36 2020 +0000 Merge remote-tracking branch 'origin/feature/gfsv16b' into release/gfsv16.0.0 commit d5e8be989d1f2f45095fea17fcb5ed1385759e89 Merge: 7728ce18 561e1953 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Oct 9 18:13:53 2020 +0000 GFSv16 package changes from feature/gfsv16b before final wave updates commit 31563a5982b26d7441e2673d68d1d1dac4fe231d Merge: bf27d0b4 6edf0f7b Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 19:03:10 2020 -0400 Merge pull request #158 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen Feature/gfsv16 wave prdgen commit 6edf0f7b396587c4e014ba08fb6199461a970c41 Merge: 896ba312 bf27d0b4 Author: wx21rph <Roberto.Padilla@m71a3.ncep.noaa.gov> Date: Thu Oct 8 22:54:12 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen Generating awips files with masks and elimination wmo headers for Arctic Ocean commit 896ba31270185a1edaa3c6d32ec3c4295badf136 Author: wx21rph <Roberto.Padilla@m71a3.ncep.noaa.gov> Date: Thu Oct 8 22:50:48 2020 +0000 Issue #94 producing awips files with masks and deleting wmo headers for arctic ocean commit bf27d0b4de54e6b873e20d784012c93384ad2358 Merge: 561e1953 959dac21 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 18:23:17 2020 -0400 Merge pull request #157 from JessicaMeixner-NOAA/feature/gfsv16b-wavegrids Adding wave grids to grib interpolation commit 959dac21e98ff96130f8e8c90a4b94b18c76f4f3 Merge: 50f33dd9 561e1953 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Thu Oct 8 21:57:29 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wavegrids commit 50f33dd92e1f78f8879cb037652b1b4393511842 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Thu Oct 8 21:44:23 2020 +0000 updates to add glo_30m to the created grib files for waves for awips processing commit 561e19532e68aaff69f5b2568c3ebb2a536b7149 Merge: 7421143a 853a4619 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 16:10:32 2020 -0400 Merge pull request #156 from lgannoaa/feature/gfsv16b Modify gfs/gdas post job to 20 minutes in wall clock. commit 853a46199f2c59ff84422024b55a70e2679213ee Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 8 19:55:56 2020 +0000 Modify gfs/gdas post job to 20 minutes in wall clock. commit 7421143a169264c8480aea5970a6d67f9bc56c43 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 18:40:28 2020 +0000 Issue #1 - update link_fv3gfs.sh to point to newly frozen fix_nco_gfsv16 FIX_DIR commit 8ac89aee11e7099303600ba6df8e3d4bf4d70a66 Merge: db9fa173 eb4ad338 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 14:37:11 2020 -0400 Merge pull request #155 from lgannoaa/feature/gfsv16b Further ecflow updates commit eb4ad338dfa1f51c9ec4ada58601ffd3f6894d7f Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 8 17:58:29 2020 +0000 Modify two wafs jobs trigger as: jgfs_atmos_wafs_grib2 trigger ../../post/jgfs_atmos_post_f000 == complete jgfs_atmos_wafs_grib2_0p25 trigger ../../post/jgfs_atmos_post_f036 == complete commit 589b1df4d5637f6e4521e79d4f286a463da477f3 Merge: 445a16b0 db9fa173 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 8 17:46:36 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit db9fa173028efd7ed796024a2f4753629e91922b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 16:01:50 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.10 and change WAFS job dependencies commit 2a0c9739631ae4b1305a2653a1783cce287aeb96 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 15:12:10 2020 +0000 Issue #1 - update config.fv3 and config.resources with v16rt2 values commit b5fbac7affc200e2c9a420f81615d0ae80b1dacf Merge: 5dac3374 6402996f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 10:36:43 2020 -0400 Merge pull request #154 from CoryMartin-NOAA/bugfix/eobs_resources Change config.resources for eobs for low resolution cases commit 5dac33742edd372a4e9b08c0b3029bb928cc569b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 14:35:23 2020 +0000 Issue #1 - update gfs_util modulefiles commit 6402996f0cb5f787d04ac08efc8dd92dca767618 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Thu Oct 8 14:28:02 2020 +0000 Change config.resources for eobs for low resolution cases commit aae0912df6b1398cdad563495475916970590b1a Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 13:51:06 2020 +0000 Issue #1 - update to fbwndgfs modulefiles for WCOSS-Dell and WCOSS-Cray commit 244e91ca0caf433f82e6e709413db4bac40aade2 Merge: 3bdda7fb 3b051e93 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Oct 8 09:40:24 2020 -0400 Merge pull request #153 from JessicaMeixner-NOAA/bugfix/wavedependency update wave post pnt dependency commit 5962e117f93f1fc9f040f97b9446bcf9dc1138e1 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Thu Oct 8 11:24:41 2020 +0000 updates to parm to reduce the number of wave variables changes to the config so that wave models are interpolated to the multi_1 masked files for the regional output grids commit 445a16b030384a84c60318600a5ccdeeccbd063b Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 8 04:03:32 2020 +0000 Modify module for each job to match implementation package change Modify two wafs jobs trigger Modify wall clock and resource for running jobs in NCO Modify obsproc package location commit 3b051e93adf60717f446564a08e5f3a11fd742af Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Thu Oct 8 01:10:14 2020 +0000 add a dependency for the wavepostpnt on wavepostbndpnt for just gfs as this job does not exist for gdas commit 3bdda7fb50676d25dbc03fffa739889a141b913c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Oct 7 17:36:27 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.9 commit 3a700dbda1d6f6ef965cf2fbf30cfdf6cb2a8fe2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Oct 7 14:36:02 2020 +0000 Issue #1 - remove POE/BACK block from config.prep and set POE=YES/BACK=off as defaults in env/WCOSS_DELL_P3.env prep section commit 8cc7d57be3c1d08529dd37633a83a6ffa8ca94b3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Oct 7 14:30:19 2020 +0000 Issue #1 - remove unneeded DMPDIR and ICSDIR from config.base.nco.static commit 343ea3daece25bfeb1f8e870d361a364d1c228f0 Merge: 22f2a407 b57cd17d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Oct 7 09:47:18 2020 -0400 Merge pull request #152 from JessicaMeixner-NOAA/feature/addwavedependency for rocoto add a dependency to wavepostpnt job on wavepostbndpnt commit b57cd17dafee5415b4955fcd8bbc76eb27e88740 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Oct 7 13:19:50 2020 +0000 for rocoto add a dependency to wavepostpnt job on wavepostbndpnt so that both jobs will not run at the same time which will slow both jobs down. This is the reason for the dependency, otherwise there is not a "true" dependency between the jobs commit 22f2a407e853b7d5342ee52faa53affdb25ac44e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 6 20:38:42 2020 +0000 Issue #1 - return POE=YES and BACK=off setting for prep on WCOSS_DELL_P3 commit c530316d07ae129f26907b2cae2079b55b37d0c2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 6 19:32:52 2020 +0000 Issue #1 - remove hardcoded POE and BACK values from config.prep commit aece8baef1cd2f46991cb1235c315e228f7b661e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 6 19:02:37 2020 +0000 Issue #1 - move ABIBF, AHIBF, and HDOB pointers into RUN_ENVIR=emc block commit c75766cd176802242f003ad3612aadff02563fb2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 6 18:17:35 2020 +0000 Issue #1 - update config.fv3 based on real-time parallel commit f79ec7e0ce356213681e8c87655bb3fb66df16f1 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 6 17:40:16 2020 +0000 Issue #1 - update prep job resources commit 577b060e63b1f47c77fd8e7a2d1b7f111fe6fcd4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 6 16:08:07 2020 +0000 Issue #1 - update g2tmpl module load in modulefiles/module_base.wcoss_dell_p3 commit c28d8cea538cdcdfc8557cb71120436edd86e313 Merge: 6197bc62 1b79fd35 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Oct 6 11:16:32 2020 -0400 Merge pull request #150 from NOAA-EMC/feature/gfsv16b_updates nwtest module library and tag updates commit 1b79fd35e79fe7d0bc8eb460dfc08d44261fc470 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 6 14:34:26 2020 +0000 Issue #1 - config updates from real-time parallel commit 11ca41294784278dc425e1ca1320253239a85d40 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 6 13:44:29 2020 +0000 Issue #1 - remove unneeded line in vrfy.sh and update link_fv3gfs.sh for UFS_UTILS execs commit 97e9d7f2d75bb7167b56aaa70c53f53e4a189192 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 5 18:50:40 2020 +0000 Issue #1 - update GSI tag to gfsda.v16.0.0 commit f6689d462ba4528c99a2a331ae8890759ba25ecb Merge: 01e36208 8048cd02 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Oct 5 14:05:27 2020 -0400 Merge pull request #149 from GuangPingLou-NOAA/feature/gfsv16b Add 6 bufr stations to the bufr sounding output commit 01e362089fbf71a962fcdfc7db48f243b74e2e50 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 5 17:09:04 2020 +0000 Issue #1 - update component tags and modulefiles for nwtest lib updates, remove unneeded module load and modulefile from downstream wave job rocoto scripts commit 6197bc623013d7fca82c556f3fb51c15832578b3 Merge: 451669a8 cd86b0ed Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Oct 5 10:47:08 2020 -0400 Merge pull request #148 from NOAA-EMC/feature/gfsv16b_updates Updates to optimize wave post jobs commit cd86b0eddd305483007e1381d0d4a7256fa05680 Merge: 9b32bf0c 95bc516a Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 5 14:16:50 2020 +0000 Merge branch 'feature/gfsv16b_updates' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_updates commit 9b32bf0c83ac9eb38f8d3b1b405b704b26c6592a Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 5 14:16:21 2020 +0000 Issue #1 - adjust error handling in wave rocoto job scripts commit 8048cd0285c8b9c8606673b04d60e8a137fe89b8 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Sat Oct 3 00:45:21 2020 +0000 issue #142 generate station i,j grid commit e4e4b84235344b6da44ae732020115581abb9afe Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Sat Oct 3 00:45:00 2020 +0000 issue #142 generate station i,j grid commit 68e5fd7279bf1f9c30fa4daa16bf44795f5e91f6 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Sat Oct 3 00:44:46 2020 +0000 issue #142 generate station i,j grid commit fcf1f415333d53fe3a97546d4a16de55d6e1d703 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Sat Oct 3 00:43:49 2020 +0000 issue #142 add 6 bufr station data commit 026b4e0a2ec1da85a3cc8c73053dd85fd4d56439 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Sat Oct 3 00:42:58 2020 +0000 issue #142 add 6 bufr stations for Thailand TMD commit faaf8041faeecbc4c39cb37782bbe291ebd7a011 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Sat Oct 3 00:41:09 2020 +0000 issue #145 change dev path to prod for parallel netcdf modules commit e6ba71f58ab5e88957f12fc742fded77a58f75d2 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Sat Oct 3 00:40:34 2020 +0000 issue #145 change dev path to prod for parallel netcdf modules commit 95bc516af61e4aa35997f45ea625773f947c2125 Merge: 28904cdd a4d0e4d7 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Oct 2 15:34:48 2020 -0400 Merge pull request #143 from JessicaMeixner-NOAA/feature/gfsv16b-wave-byhr optimize wave post and EE2 commit 451669a8f8d7778addd7bbd090d2fe71c9a6e3f8 Merge: 340f849f 28904cdd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Oct 2 15:32:41 2020 -0400 Merge pull request #144 from NOAA-EMC/feature/gfsv16b_updates Issue #1 - updates for modules and small fixes commit 28904cddca4d3e432f6b155ae018b6a081aea82e Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Oct 2 19:05:10 2020 +0000 Issue #1 - updates for modules and small fixes - fix to run ens_tracker without tclogg module in modulefiles/module_base.wcoss_dell_p3 - fix to sorc/syndat_qctropcy.fd/qctropcy.f for compile warning - fix to gfswaveawipsbulls dependency in setup scripts - update to bufr/11.3.0 from bufr/11.2.0 in modulefiles - add override ability for POE for prep jobs in env/WCOSS_DELL_P3.env commit a4d0e4d7a063c14f711bee5ef32cd0b183121ea7 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Oct 2 18:59:22 2020 +0000 reverting changes to configs that were not intented to be committed commit 2e6ba320b39b50030c8097a09700e2eb81cb724a Merge: cb7b27c9 340f849f Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Oct 2 18:08:59 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave-byhr commit cb7b27c96c59388e39283b2c01aff2da92fcedbf Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Oct 2 18:08:16 2020 +0000 fix resource time estimates commit d51a260adc0fb003730ae4090c528856ac18be93 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Oct 2 18:04:50 2020 +0000 bug fix in exgfs_wave_post_pnt.sh commit 340f849f1cad6b562a941f15318eaf2d050743f1 Merge: 897286fb d5457ec1 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Oct 2 12:00:00 2020 -0400 Merge pull request #141 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen Updates to downstream wave jobs commit 2b2635d441beb988e6c09a329eb80e1d519266ee Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Oct 2 14:38:06 2020 +0000 update resources and trigger from 192->180 commit 56193a6bf9e8942edd54b7b7078143a3c91bc77f Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Oct 2 14:10:05 2020 +0000 last of EE2 changes commit ad5dcff885c3690f991936412453506deed543a6 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Oct 2 14:01:25 2020 +0000 updates for EE2 from waves commit d5457ec1e15e670677eea3171e68df20e4d6ca53 Merge: 4c488d30 897286fb Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Thu Oct 1 19:02:34 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen Issue #94 Adding error capture in the Jjobs commit 4c488d30947cf556d6cbf05d570fa6c41ae59ffb Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Thu Oct 1 18:45:21 2020 +0000 Issue #94 fix for failing silently commit 897286fbdfea6a8d5765f9d89ab7c586bcadb201 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 1 18:14:37 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.8 commit e133c5d1d509781824140f5ec1d302502394dc89 Merge: a25a7dea 545742c4 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Oct 1 09:13:05 2020 -0400 Merge pull request #140 from lgannoaa/feature/gfsv16b Update ecflow scripts for GFSv16 commit 8f79b61ab8b0c7ed17b707eaae7736a3aedd33ef Merge: cc9e98a6 a25a7dea Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Sep 30 16:09:27 2020 +0000 Issue #94 solving conflicts commit cc9e98a6d03fa422f5080626da02426c174e2b45 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Sep 30 15:23:29 2020 +0000 Issue #94 add native grids as default grids commit 545742c42c635d24c360a8c9b0902483cab66359 Merge: 65ba88e5 a25a7dea Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Sep 30 14:05:40 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit a25a7deac9053dbb2ce119e3754f32c2d3f225b9 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 29 22:46:35 2020 +0000 Issue #1: update name of ncdiag executable and source code directory to be conistent commit 2eab17ce11be26c7d113e16e3a9159e0e6395cac Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Sep 29 19:05:21 2020 +0000 cleaning up the rearranged scripts commit 65ba88e5ad97a560e4b1c6dd7a3568185e5ccbd9 Author: Lin.Gan <lin.gan@noaa.gov> Date: Tue Sep 29 18:22:29 2020 +0000 Jobs were tested with PDY 20200925, code managers from post, gempak, wave, and post process certified the test run result. This merge included an update from high watermark testing (tested by gfs team using devonprod) results impact the following jobs: jgfs_atmos_analysis.ecf jgfs_forecast.ecf jgdas_atmos_analysis.ecf jgdas_enkf_update.ecf jgdas_enkf_ecen.ecf commit d86cfee7befd1d97c9ff6fd8cb58d2f9c9f9f1d8 Merge: abe24e27 69bdae3e Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Sep 28 18:47:23 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave-byhr commit 121bafee1e227119ddcba233da5b59af242128e4 Merge: 0d7ba5fb 69bdae3e Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Sep 28 18:42:03 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit 95f03be594d2944f14f0f6baa600bae27691e891 Merge: 7278b067 69bdae3e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Mon Sep 28 17:30:03 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit 69bdae3e7cdb35db28d899b7384daab48e888eb4 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Sep 28 16:58:47 2020 +0000 Issue #1: update parm/config.vrfy to define VSDBJOBSH (used by jobs/rocoto/vrfy.sh) commit abe24e279666ecccb27fb875322373b4920a66d3 Merge: d4ebc2e6 ef6d2c5c Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Sep 25 21:56:05 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave-byhr Conflicts: parm/config/config.resources commit 0d7ba5fb286ac280efda5510a23e2dbf625ba19a Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Sep 25 21:34:42 2020 +0000 Code manager indicated all wafs jobs wall clock is 30 mins. Code manager indicated job card for scripts/gfs/atmos/gempak/jgfs_atmos_pgrb2_spec_gempak.ecf need to be changed commit 998228f94e36f63a0586f431fbcd32fb646d0ee6 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Sep 25 21:02:57 2020 +0000 The EMC realtime parallel does not use operational job settings. Ecflow job card roll back the setting from module_used_gfs-16_job google sheet document. commit 0e700ef159835510b3e3d02d27448826cb8dd914 Merge: 9b8e2f3a ef6d2c5c Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Sep 25 19:49:13 2020 +0000 Bring change from upstream_feature_gfsv16b commit ef6d2c5ca3243c579615ee47bcef494bc42f335e Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 25 16:17:05 2020 +0000 Update GLDAS tag to gldas_gfsv16_release.v1.10.0 commit a9f8cb2616259b5610b9d101b5f9e50ea3013a2e Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 25 16:06:11 2020 +0000 Update gfswafs job to run with loop over fcsthrs commit 8187a31eca915184a43c0649db0170271b4ee6a9 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Sep 25 14:06:43 2020 +0000 Issue #1: update vrfy.sh to submit vsdb processing as separate job (only on WCOSS_DELL_P3) commit 320f33033ac0f6f6919bd933c0a18d2a4088fcd6 Author: Roberto Padilla <Roberto.Padilla@noaa.gov> Date: Thu Sep 24 23:29:10 2020 +0000 Issue #94 add /fakedbn to run DBN_alerts commit 0d2c6280ac80d944ea7e9e2700430f42d24b3867 Merge: f9876550 83655eda Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Sep 24 17:17:17 2020 -0400 Merge pull request #139 from NOAA-EMC/feature/gfsv16b_jobname Update script names to match ecflow convention commit 83655eda76114414f39c5e32a61b93186b42ac3c Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 24 18:30:00 2020 +0000 Update config.awips for newly named JJOB scripts commit 2f5fb01d02516a6fe72664c54cd97a5585f99a3f Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 24 18:20:14 2020 +0000 Update WAFS jobs/rocoto scripts to use new JJOB names commit 9b8e2f3a2b782c9dc602c620ce7efc2f7210d6dd Author: lin.gan <lin.gan@noaa.gov> Date: Thu Sep 24 15:30:45 2020 +0000 Making J-Job naming change accourding to code manager. Remove temp files commit ff50171eea7b99c7e89b0b773824464da5fe949f Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 24 14:24:23 2020 +0000 Update post.sh UPP JJOB script name to submit commit 0eb85537f30b1c89ed160374e2e7f8470d7a20d0 Author: lin.gan <lin.gan@noaa.gov> Date: Wed Sep 23 18:42:52 2020 +0000 Modify each ecflow script with old j-job name for test. Modify the following in each definition file. - ecen family require new extern from previous cycle - Job jgfs_atmos_npoess_pgrb2_0p5deg trigger changed to be (requested from code manager): 1. jgfs_atmos_post_manager:release_post180 - Job jgdas_enkf_select_obs trigger changed to be: 1. previous cycle enkf post complete 2. current cycle jgdas_atmos_analysis_calc complete (new job) Tested as of 9/21/2020 before production switch with following condition: 1. Known issue in wafs gcip. Job failed. Waiting for code manager to fix. 2. obsproc testing still on going. 3. Code manager still updating j-job and ex-script names. Testing in hold until package is ready and WCOSS availability. commit 9fb09168c9aa2057a0c919f66bdf43b8e4e3a545 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 23 15:41:20 2020 +0000 Update config.base.nco.static with config.base.emc.dyn changes commit a1a7ac9495446976b9e9ccae48a39bb4b868c19b Merge: ee4bc2b7 70f5064e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 23 10:19:52 2020 -0500 Issue #5 - sync merge with feature/gfsv16b_jobname commit 70f5064e8e345e073d9c0dc7da812d0a2a51d91d Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 23 14:00:07 2020 +0000 Script name updates for sfc_prep and tracker commit 4346c03a1aaf1cf1429a59b6a5682065c2c6e51b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 23 13:51:44 2020 +0000 Name change for tropcy scripts and update WAFS tag commit 0ef9e49d9752643fa3ebdc8fc0ef9768968836d2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 22 17:50:35 2020 +0000 Fixing spelling mistake in config.gldas commit 9fdb9eef052586c36abf034cd335ec649bf9cf19 Merge: 869dfa35 f9876550 Author: lin.gan <lin.gan@noaa.gov> Date: Tue Sep 22 17:13:20 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit 4b1affe520e0610c14168ccba4ef3439a3b7a966 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Tue Sep 22 16:39:39 2020 +0000 Updated drivers and release notes commit 2ed155ccee58d3cc72d7fdf6577806c7a14e58e9 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Tue Sep 22 15:55:01 2020 +0000 Updated scripts commit 6d171bc82f2c63f146fe1cf760c350b2effc20e6 Author: Wen Meng <wen.meng@noaa.gov> Date: Tue Sep 22 15:26:37 2020 +0000 Update Externals.cfg with new UPP tag upp_gfsv16_release.v1.0.16. commit 4b4069b715c9ebcc5122b79a1508f70ad7c78b46 Author: Wen Meng <wen.meng@noaa.gov> Date: Tue Sep 22 14:59:24 2020 +0000 1)Update sorc/checkout.sh with new UPP tag upp_gfsv16_release.v1.0.16. 2)Update sorc/link_fv3gfs.sh with new file name convention for jjob and ex-script of post processing part. commit c071ac0159cce98ea98ce5fa8dc5337b284ad136 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Tue Sep 22 14:48:45 2020 +0000 Updated jobs name commit ea13d0c9146457aadd65d567fda794beeeef6c7d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 22 14:27:47 2020 +0000 Update EMC_verif-global tag to verif_global_v1.11.0 commit 92e69985706cf62cdd7b383fd45c4cd50f937053 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 22 14:15:24 2020 +0000 Rename scripts to match ecf script naming convention. Add SENDDBN and DBNROOT. Update GLDAS tag. commit 37ae040a0f21ec344228128e3e79910059c3b734 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 22 04:30:58 2020 +0000 In anticipating changes from the GLDAS repo : renaming JGDAS_GLDAS to JGDAS_ATMOS_GLDAS, and exgdas_gldas.sh to exgdas_atmos_gldas.sh modified: driver/gdas/test_gdas_gldas.sh jobs/rocoto/gldas.sh parm/config/config.gldas sorc/link_fv3gfs.sh commit c58b93a61f77d65f042f8226445163029ebd9f8d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 22 04:06:06 2020 +0000 renamed: jobs/JGFS_POSTSND -> jobs/JGFS_ATMOS_POSTSND renamed: scripts/exgfs_postsnd.sh -> scripts/exgfs_atmos_postsnd.sh modified: docs/archive/README_bufr driver/product/run_postsnd.sh driver/product/run_postsnd.sh.cray driver/product/run_postsnd.sh.dell driver/product/run_postsnd.sh.hera driver/product/run_postsnd.sh.jet parm/config/config.postsnd commit bec1b83027e162e4c083464d2cdb3fbdbd5168e8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 22 03:51:02 2020 +0000 renamed: scripts/exglobal_fcst_nemsfv3gfs.sh -> scripts/exglobal_forecast.sh and modified jobs/JGLOBAL_FORECAST parm/config/config.fcst commit d4ebc2e6798d13af1ced8a51899e80e209a13c71 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Sep 21 18:28:15 2020 +0000 updates for optimizing point jobs commit 7278b0677be6168a9695fca6c2e08154d9af0f63 Merge: 928e3e4b f9876550 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Fri Sep 18 18:35:06 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit f98765509cc7fc0e7b8979abfc73dbc5db035825 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 18 16:58:57 2020 +0000 Issue #1 - update SEND variables and add DBNROOT to base configs and add check to build_enkf_chgres_recenter_nc.sh for GSI build commit e9e8d63db112ab8f5e15de08a1714cfebd386a2a Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 18 15:18:48 2020 +0000 Issue #1 - update to UFS_UTILS ops-gfsv16.0.0 tag commit 3df7625d74012552cf69fcfe7c0b5384b860c999 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 18 13:25:00 2020 +0000 Issue #1 - fix to link_fv3gfs.sh for new GLDAS tag commit 928e3e4b53e969f8ecdd3544c3bf2668b57c66b3 Merge: dd081426 1fc7bde9 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Sep 17 20:00:17 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit dd08142664e5695e3f27890c0560f0b5e48841a8 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Sep 17 19:57:20 2020 +0000 Issue #131 Unify dbn_alert path commit 1fc7bde9b7f99da7d0430387ec4a547e73ea641b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Sep 17 19:37:41 2020 +0000 Issue #1: update to UPP tag "upp_gfsv16_release.v1.0.15" commit 9eae5a8af39c4a8c5d47c16725ccc62b5d3c60cf Merge: ce1c7825 99c15099 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Sep 17 13:46:58 2020 -0400 Merge pull request #135 from KateFriedman-NOAA/feature/gfsv16b-down Small updates to downstream jobs and tag updates commit 99c1509923399845ba794cb8fad981d12935dd03 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 17 13:13:14 2020 +0000 Fix for running prep on Hera commit 869dfa350a013f66e5fdca66aa9b1f0192c1570c Author: lin.gan <lin.gan@noaa.gov> Date: Wed Sep 16 21:25:10 2020 +0000 ecflow full day cycle included commit 515eeb5c6b188e873b304619c40c9a6efcfd9046 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 16 19:53:26 2020 +0000 Update WAFS tag to gfs_wafs.v6.0.6 commit 89f138af89814c865331b9aefcb8450b5915d1f7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 16 16:33:21 2020 +0000 Small updates: - new UPP tag - new GLDAS tag - new WAFS tag - new module for WAFS - EE2 updates to awips scripts - added WAFS to archival - break downstream and WAFS archival into separate gfs_downstream tarball - update gfsarch dependencies to wait for all wavepost jobs to complete commit 9930e8770a2940c46e22b243c11d2ac14f95611a Merge: b3433d59 ce1c7825 Author: lin.gan <lin.gan@noaa.gov> Date: Wed Sep 16 13:25:36 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit b100c22b5bfcf455ff3ff15bd71f0ddc15f1d071 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Sep 15 18:57:21 2020 +0000 Issue #131 reduce scripts output to logfile commit 6866e6cd2ef1e76dd58de27ebb7d68b2bd3fa304 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Sep 15 18:55:03 2020 +0000 Issue #131 added a path to DBNROOT commit b3433d59d1d5b75f015b0e044a8b4e03d55407f7 Author: Lin.Gan <lin.gan@noaa.gov> Date: Tue Sep 15 17:59:32 2020 +0000 Adding wafs wave and downstream jobs commit 4c7ccd466bc71b3e73194ffc48385225e01e7c0c Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Sep 15 15:29:44 2020 +0000 updates for by hour post commit ce1c78255f4bf8f40c2f116547062c7f1b3832c5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 15 10:25:37 2020 +0000 Issue #1: add fhrgrp and fhrlst back to gfsawips in setup_workflow.py (bugfix) commit 67b33dd15633345e0fd59dd37728c26b36d4c0b3 Merge: c33869da 586fe6ce Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Sep 14 10:34:39 2020 -0400 Merge pull request #130 from JessicaMeixner-NOAA/bugfix/rtofs Bugfix for rtofs commit 586fe6ce19c5fc281dec16be3347d0311f3e99ce Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Mon Sep 14 14:29:01 2020 +0000 adding the line to go back a day for RTOFS for the if not NCO section because RTOFS will not be available until 06 cycle commit 15fcb8a46e2cbc93282d1ad038e6decc5fcdacfb Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Sep 14 13:30:24 2020 +0000 Restructured ecflow - up to post step commit c33869dab2704396ea6e569dcd202a2b9866827a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Sep 14 02:34:08 2020 +0000 deleted relocate_mv_nvortex.fd since storm relocation is no longer needed. modified build_tropcy_NEMS.sh to remove references to relocate_mv_nvortex commit 4320bf9fd55757df79b63ed15c2041b1acd0e604 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Sep 12 00:05:38 2020 +0000 Issue #1: correct DA typos in sorc/link_fv3gfs.sh commit 674cd841a7be3a2a9c772cd455ab980195ea9fcc Merge: 46c2404e ad1a9d90 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 15:06:36 2020 -0400 Merge pull request #124 from JessicaMeixner-NOAA/feature/gfsv16b-wave Splitting post jobs for waves commit ad1a9d9044e89b75ec82bb201e35005552d3d177 Merge: 986f8f0b fd687727 Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Fri Sep 11 14:01:35 2020 -0400 Merge pull request #4 from KateFriedman-NOAA/feature/gfsv16b-splitwavepost Sync with feature/gfsv16b and small updates to split wave post changes commit fd687727b2df80f81fabc41b94f808b74e68783c Merge: 986f8f0b fc60e895 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 17:52:30 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-splitwavepost commit fc60e895dea1c123a4b8e02b50df0d0cfa43f77f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 17:45:03 2020 +0000 Increase walltime for new wavepost jobs commit e0dd1097de2c335400a546137569886a838c46ba Merge: 0844b004 46c2404e Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 14:20:15 2020 +0000 Merge branch 'feature/gfsv16b' into feature/gfsv16b-wave commit 46c2404eba485d08e381ef81ebd5ac10c5ad605f Merge: c5546570 9d9b79c9 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 10:15:49 2020 -0400 Merge pull request #128 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen Feature/gfsv16 wave prdgen commit c554657023d82ac934b481593e55406c45157932 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Sep 11 13:59:51 2020 +0000 Issue #1: update name of DA jobs and scripts in accordance with WCOSS Implementation Standards commit 9d9b79c911add71065b0999821772d026609ad62 Merge: cb78f7b8 d3946f90 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Fri Sep 11 13:48:19 2020 +0000 Issue #94 solving a conflict commit cb78f7b839a7b5fd5082f39592e3b450ce059e82 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Fri Sep 11 13:21:41 2020 +0000 Issue #94 add waves-prdgen, ICE->ICEC, Sleep in gempak script commit b4a99e3d8b2f6a3837084ddfb08da6a667de81e0 Merge: edb91373 e6148566 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Sep 11 13:19:13 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/lgannoaa/global-workflow into feature/gfsv16b commit e614856610da39345976823d29bdc32781f38c71 Author: lin.gan <lin.gan@noaa.gov> Date: Thu Sep 10 16:26:11 2020 +0000 add gfs gempak downstream jobs into def file commit 907291d81c512968817241b883a0084b8506f2b2 Merge: 3f9695b4 d3946f90 Author: lin.gan <lin.gan@noaa.gov> Date: Thu Sep 10 15:46:45 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit ee4bc2b7268bf8f23ca7f7b3b631ddd6730c6a8c Merge: 41d146fc d3946f90 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 9 08:54:17 2020 -0500 Issue #5 - sync merge with feature/gfsv16b commit 6b38e648f244afbba9590ea1a4de70d4ce2ed119 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Sep 8 22:14:13 2020 +0000 worked on wcoss commit edb913733023b1025786901aee895d2dbca5edc7 Author: Lin.Gan <lin.gan@noaa.gov> Date: Tue Sep 8 16:09:07 2020 +0000 ecflow script rename after redesign approved - not including all wave jobs commit d3946f9006f433e0a6b2f459aeaa7fd8bf800aff Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 8 14:46:39 2020 +0000 Issue #1: clean up DA sections of link_fv3gfs.sh commit 986f8f0b9858f61d32d337a67efa966a7948aa94 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Sep 4 15:42:25 2020 +0000 fix from Bhavani for having first wave grib file be set as a forecast instead of analysis commit 0844b0043c937925c5ad76b4fad03308483d49b3 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Sep 4 15:42:25 2020 +0000 fix from Bhavani for having first wave grib file be set as a forecast instead of analysis commit c1d5c45c13b46964d9d2479962b8c56307a6ad11 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Sep 4 15:42:25 2020 +0000 fix from Bhavani for having first wave grib file be set as a forecast instead of analysis commit 3f9695b44deef4790ae443f4d0c1844b1385374d Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Sep 3 19:07:35 2020 +0000 ecflow gfs v16 nco review 3 commit 256885283bb42c2309e820ca53b44042b8223617 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Thu Sep 3 17:44:47 2020 +0000 updates to split boundary points plus saving config file updates commit 8a203e5d5afa92a2b925f69efa5237a2c0d3dca6 Merge: 40c689b5 26c84b3c Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Sep 3 17:36:19 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b commit 64409b1e9e976b75afd8a3548e7023dce534c4ae Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 3 15:42:23 2020 +0000 Adding missing space to if-block in env files to resolve runtime failure commit 0485442f5876b82de73c47429d3a70f58f0aa263 Merge: 26c84b3c 2006bbcb Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 3 15:37:50 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-wave * upstream/feature/gfsv16b-wave: adding pnt jobs as seperate jobs for env moving definitions of wavempexec and wave_mpmd from jobs to env lowering the resource requirement for wave prep job update module for cdo updates to resources for wave jobs Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py cleaning up wave point post scripts rename wave post script remove gridded so can rename updates to boundary point Remove extra space from line Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes fix typos updating WCOSS work around for CDO, CDO_ROOT is missing from module file adding module use for cdo module on wcoss dell updates for new weights file and adding cdo module for wave prep Adding new wavepostbndpnt and wavepostpnt jobs updating wave post scripts for restructured format updates to JJOBs for wave post point for new structure changing exit 0 to exit number for FATAL errors in ice prep for waves updating error message and exit if there is no current input file update WAVE_PREP so that currents do not check for previous 24 hour so that parallels will be reproducible also deleted unused variable renaming wave job and scripts update jobs for waves Issue #94 - pull in two fixes for wave job setup in free-forecast mode updates for wave scripts to split them, also added updates from GEFS branch to add extra error checking updates from gefs post workflow: updates for re-run case as well as extra error messages commit 26c84b3ca81dec965ab31d00409b537f61174dc1 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Sep 3 14:06:29 2020 +0000 Issue #1: remove pgrb2b.0p25 dependency from gfsawips in setup_workflow.py commit 40c689b5d5886d9a4bed92e0c6262bfc5988836d Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Sep 3 02:00:09 2020 +0000 ecflow gfsv16 redesign 2 commit 609e157c2477b662b55bbf3d53999cdd30856bc8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 20:35:28 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.4 and remove HOURLY variable from WAFS configs commit b0bebad6258bd81c0b0c89b559a04d9b059c838e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 20:08:01 2020 +0000 Issue #1 - change wavegempak and waveawipsgridded dependency to match waveawipsbulls and start when wavepostsbs is complete commit 084c89e3d562f8c9977eaa17624646be388f7854 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Sep 2 19:58:37 2020 +0000 Issue #1: set n_sponge=42 in gfs section of config.fcst commit 2006bbcb1e54e3cd5ae0ff2826b6d0b211c1d013 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 19:22:38 2020 +0000 adding pnt jobs as seperate jobs for env commit c61cd59488b64ead77e13b2eb5faeb383d052ea0 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 19:02:21 2020 +0000 moving definitions of wavempexec and wave_mpmd from jobs to env commit 68ed2d670ebe25713554f2165a0bbc7c35fb5030 Merge: 4e7975d2 70abda26 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 17:45:26 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave Conflicts: parm/config/config.resources ush/rocoto/setup_workflow.py ush/rocoto/setup_workflow_fcstonly.py commit 70abda260dc9ab47533d25cd570dd055c4644123 Merge: 0a31d568 52e987ac Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 10:28:22 2020 -0400 Merge pull request #122 from KateFriedman-NOAA/feature/gfsv16b_wavedown Add downstream wave jobs to GFSv16 commit 0a31d568bdacd0fb2d8bc6e1fddb09d2c72d014c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 14:09:57 2020 +0000 Remove unneeded settings from config.post commit 52e987ac67477932e5b034321cf52f1cc756081c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 13:05:42 2020 +0000 Added null DBNROOT to wave awips configs commit b3c7b7379a6ebb53b4d4533b894b1bf36df3c2fd Merge: 074f2782 add6ea0b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 13:02:41 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b_wavedown commit 806a57838b2a6fd8a9df993fd6cd8debf9fb659a Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 12:28:43 2020 +0000 add extra script for by hour points for waves commit ab3e0b196bbb147da99da4ef34710e8d5fbb68ea Merge: 054f8c53 4e7975d2 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 11:40:04 2020 +0000 Merge branch 'feature/gfsv16b-wave' of github.com:JessicaMeixner-NOAA/global-workflow into feature/gfsv16b-wave commit 054f8c53608689b00b32d035ce728ed3d8cb3ad9 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 11:39:28 2020 +0000 updates for boundary points by hour parallelization commit 4e7975d265857e4e634e0c7352f6ed2de1a99336 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Sep 1 22:45:05 2020 +0000 lowering the resource requirement for wave prep job commit add6ea0bae2c56bba2e3d76460771095b98786b1 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 1 19:40:10 2020 +0000 Issue #1: rename enkf_chgres_recenter executables in accordance with WCOSS Implementation Standards commit 8a7e8d9944b8727da91bfb28bbfe44958f0aeb65 Merge: 4c9978a8 595edcfa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 15:00:08 2020 -0400 Merge pull request #121 from KateFriedman-NOAA/feature/gfsv16b-wafs Adding WAFS jobs to GFSv16 commit 4c9978a8b0a98527d7c78a3da0a0a55e39cefed0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 18:48:44 2020 +0000 modified: checkout.sh to use gldas_gfsv16_release.v1.6.0 commit 595edcfaaf1372889c8d569e01ec4dfefb51c469 Merge: 8a593c8d 06bda7de Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 17:30:08 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs commit ada0fb3155a57bdba074c84e1ab3d73eabb0e2f4 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Sep 1 17:18:27 2020 +0000 update module for cdo commit 074f2782438471740453e356b856a4756e59c858 Merge: a1a3d69b 8a593c8d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:30:56 2020 +0000 Sync with WAFS branch commit a1a3d69ba40564f550053b99b4328ba41c7cc45d Merge: 249b6ef7 06bda7de Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:22:20 2020 +0000 Sync merge with feature/gfsv16b commit 8a593c8df03d8a879c5488fbd671fef94f5d867d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:09:49 2020 +0000 Update to WAFS tag and added SENDDBN_NTC to both base configs commit 5270ed831c0b3c428736cbd8a789a4d3cfdcc0fe Merge: 95ec3329 eabda84f Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:03:53 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs commit 06bda7dec74831951034b72c83abbb2d994ee539 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 14:02:44 2020 +0000 modified: link_fv3gfs.sh to not link or copy 0readme fix_chem fix_fv3 fix_sfc_climo which are not used by GFS.v16 and are of large size commit eabda84f97c11251f672d95bb604ad0c50e8da18 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 13:48:11 2020 +0000 modified: link_fv3gfs.sh to remove chgres_cube.fd and chgres_cube.fd in sorc/link_fv3gfs.sh commit 223492bf6c56c0491c0034dc1d4a0a3e6e97a607 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 03:59:53 2020 +0000 modified: link_fv3gfs.sh to allow "fix" directories to be removed before rerunning link_fv3gfs.sh for RUN_ENVIR=nco case commit 95ec3329e72a54b0dabdccdecd467972c4914dcd Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 31 18:57:32 2020 +0000 Added WAFS jobs to free-forecast mode, updates for extending WAFS to fh120, and two bug fixes in link_fv3gfs.sh and hpssarch_gen.sh commit 6f660d9a9a5758f3d74f87f170a95a26ca0c0e6a Merge: 8da41916 3282a899 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 31 17:58:55 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs commit 3282a8996ab0510699932a53897b87730b2cc492 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 31 17:47:37 2020 +0000 Renamed global-workflow-owned ex-scripts to remove ecf extension and updated other scripts which call those ex-scripts commit 9cde3a41f34d0c2618e8fb06ff1276cec5378ef5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 18:46:57 2020 +0000 Remove UFS_UTILS ecf extensions commit f7a92dbc1c3ad822d3b8e567967e91384631288d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Aug 28 18:09:26 2020 +0000 Issue #1: (1) update earc.sh directory removal to be consistent with arch.sh, (2) update config files to be consistent with EMC real-time GFS v16 parallel commit 249b6ef761fb41b5d102b282fccedeb827192dff Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:52:54 2020 +0000 Remove ecf script name extensions from downstream wave scripts commit 004a29f39204314159d2cbd028950cfaba07cf33 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:50:03 2020 +0000 Add new downstream wave jobs to workflow commit 8da4191644ff55f46e8f394e4e1d29641d3c117c Merge: 8f97726a 6319bda4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:42:11 2020 +0000 Sync merge with feature/gfsv16b commit 8f97726a4170d56dcaf6732ae141fae9aaebfd8d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:39:50 2020 +0000 Add new downstream WAFS jobs commit 6319bda47548873acb8859d9a47d2ac6a6ef4c67 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 15:41:55 2020 +0000 Issue #1 - update GLDAS and UPP workflow files for removal of ecf script extension commit 8f7615c76f76611d748246a80d9286de7c4d3295 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Aug 27 20:53:25 2020 +0000 Issue #1: remove ".ecf" suffix from DA scripts referenced in sorc/link_fv3gfs.sh commit af754d1fa0aa4a521fcd5b4fc04eaa88d475dbff Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Aug 27 20:47:14 2020 +0000 Issue #1: remove ".ecf" extension from DA exscripts (as per WCOSS Implementation Standards) referenced from parm/config files commit a6e91b48b7024c83491fd1f93c6d7df8e3301af5 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 27 20:25:45 2020 +0000 updates to resources for wave jobs commit f0b9a98973b7983eadab51c7009723b5d0b4a564 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 26 23:04:02 2020 +0000 Issue #1: update name of DA enkf chgres script in config.echgres commit 01f33c498bf0b5c0d48486cd04dab9c93c721906 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 26 20:58:29 2020 +0000 Issue #1: Rename DA enkf chgres job and script as per EE2 guidance commit 7d3f37819aba17dc794d10f7453061802779b435 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 26 18:35:59 2020 +0000 Workflow changes for wave gempak and awips downstream jobs commit 485632eafe37c1866011af1bd0a601fb1c7adc4c Merge: 2946baad e191fd4b Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Wed Aug 26 11:49:40 2020 -0400 Merge pull request #3 from KateFriedman-NOAA/feature/gfsv16b-wave Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py commit e191fd4bb87af787feab486bf072fe4dce7f12f4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 26 15:47:49 2020 +0000 Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py commit 4641a72e1ced493c7ec5d837a3093908e388b5df Merge: a1b08c92 25ae4899 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Aug 26 11:33:23 2020 -0400 Merge pull request #119 from GeorgeGayno-NOAA/feature/gfsv16b enkf_chgres_recenter_nc.fd - Remove hard-coded vertical levels. commit 25ae4899cee3dc3aeff1e36f0ac1d0b0773ca2f9 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Aug 26 14:25:36 2020 +0000 feature/gfsv16b: Add Cory's updates to build 'enkf_chgres_recenter_nc' on Cray. Issue #102. commit 2946baad88d908b32793f542cab42f0c89adf009 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Aug 26 13:44:06 2020 +0000 cleaning up wave point post scripts commit 3590e9a45e2b13b22ff3c3d4827907ddcf55eebf Merge: 727c3ffd a1b08c92 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Aug 25 20:20:17 2020 +0000 feature/gfsv16b: Merge updates from authoratative feature/gfsv16b branch. Issue #112. commit a1b08c92892278453f25c2530f8b8fb968af9a34 Merge: 45ad029b ce3816d3 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 16:01:57 2020 -0400 Merge pull request #116 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen Feature/gfsv16 wave prdgen commit ce3816d3e88b8d2de7472a214e66cb54aceca9a6 Merge: b0c91610 45ad029b Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Tue Aug 25 19:55:53 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen Issue #94 Adding prdgen for waves commit 90181842fbb7a22479f12d3a67bcdc8fa4b8f669 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 25 19:02:22 2020 +0000 rename wave post script commit 1f15be0a8207d3117200bcc145a5ae66b7445ec3 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 25 19:01:41 2020 +0000 remove gridded so can rename commit 1fc5b368fe0cd438e2202b62de7753b7efed7af6 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 25 19:00:20 2020 +0000 updates to boundary point commit f0e3ae5c2cd441673a4a670618e87f050a12c9e9 Merge: 98d6c163 b74b21e7 Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Tue Aug 25 14:15:57 2020 -0400 Merge pull request #2 from KateFriedman-NOAA/feature/gfsv16b-wave Feature/gfsv16b wave commit b74b21e71edbb62207ccfcafe4c6ed5b6d301cfe Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 18:14:15 2020 +0000 Remove extra space from line commit 25e2cc4596213b39d2a3dc3ee8afda4a86e10d38 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 18:12:04 2020 +0000 Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes commit 45ad029bad4367961e5eff987f27226b0ac78d5a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Aug 25 13:40:45 2020 +0000 Issue #1: several minor changes * Externals.cfg and sorc/checkout.sh: update to tag verif_global_v1.10.1 * jobs/rocoto/arch.sh: update ARCDIR cp to use new path to tracker output * scripts/run_gfsmos_master.sh.dell: remove module purge from mos driver script commit 0a85a36ef0784bebf96d2f97c24dd4c642ac23f1 Merge: d5861551 5190efb1 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 09:20:42 2020 -0400 Merge pull request #118 from GuangPingLou-NOAA/feature/gfsv16b Issue #117 Modufy Bufr station Hilo's grid point representation commit 5190efb119c6eec6a7c67d90327dee4666307541 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Aug 25 12:30:45 2020 +0000 Issue #117 Modufy Bufr station Hilo's grid point representation commit 98d6c16336e5b0a3241174c54b7631667a4f919d Merge: 0eacf5e2 32bd57ef Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 22:27:39 2020 +0000 Merge branch 'feature/gfsv16b-wave' of github.com:JessicaMeixner-NOAA/global-workflow into feature/gfsv16b-wave commit 0eacf5e21c3149d2d922b4c2495e48fb2355e639 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 22:27:28 2020 +0000 fix typos commit b0c9161061302ccf4b890cceabe5b4eaecb67e61 Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 22:25:05 2020 +0000 Issue #94 changing native by interpolated grids for gempak commit 8a68d3c6d6996f389609d5961f32f0db116797d1 Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 21:47:44 2020 +0000 Issue #94 removing the load of modulefiles and sending set.pdy to j-jobs commit 32bd57ef2b390dbe73a744188a40ca4c42c306fe Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 20:35:39 2020 +0000 updating WCOSS work around for CDO, CDO_ROOT is missing from module file commit a2d06bb0bf82ee48899cb26ea9abf2331b543107 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 18:55:02 2020 +0000 adding module use for cdo module on wcoss dell commit e5c9f037bd82ed4bc72cf11241d7c053160ff5b9 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 18:29:36 2020 +0000 updates for new weights file and adding cdo module for wave prep commit 96655fbe5b5daf130d4a9a458ce47059c047376a Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 16:56:37 2020 +0000 Issue #94 removing modulefiles load from j-jobs commit 7f9344f777075ce3220d9a9fccba74c07e4f40e2 Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 14:32:26 2020 +0000 Issue #94 Solving reviewers comments commit c9598a3207bb06cbd7d2619d97f723f6511da9a4 Merge: bf97710b 92a2a43d Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Mon Aug 24 10:12:43 2020 -0400 Merge pull request #1 from KateFriedman-NOAA/feature/gfsv16b-wave Adding new wavepostbndpnt and wavepostpnt jobs commit 92a2a43db190982944b4166b929a791a1b0b0750 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 24 14:06:23 2020 +0000 Adding new wavepostbndpnt and wavepostpnt jobs commit bf97710bece30195679740b0de2b32e0adc6c3c6 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Fri Aug 21 00:20:56 2020 +0000 updating wave post scripts for restructured format commit a914521cec478667191b365e2a2a62e3553e0ff7 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 23:52:47 2020 +0000 updates to JJOBs for wave post point for new structure commit 1f195f8d432072f4e4f66406ea6b09256a185d2b Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 15:20:28 2020 +0000 changing exit 0 to exit number for FATAL errors in ice prep for waves commit f836a7869dbb88badd93fcd9d08314284eee4f96 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 15:17:28 2020 +0000 updating error message and exit if there is no current input file commit 529cc3692f4fc003295584e761279be3c9405b68 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 14:50:50 2020 +0000 update WAVE_PREP so that currents do not check for previous 24 hour so that parallels will be reproducible also deleted unused variable commit 57c4258ba73778fe95118ebfae98c4bbf012ae37 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 14:09:22 2020 +0000 renaming wave job and scripts commit 1626cb2f90bfea5663f198cfc2ac2916a9200e1a Merge: da292216 d5861551 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 14:02:54 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-splitwavepost commit da2922163922f4b4b14dba78dba36e9eced3a2c5 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 13:50:15 2020 +0000 update jobs for waves commit a1c456f267ddf701aa47ad33fd231a2f1ae0bf99 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Aug 19 20:09:47 2020 +0000 Issue #94 renaming the J-jobs commit 41d146fc0fda97a41ef829ecff41b005bbf21740 Merge: c2a4f04e d5861551 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 19 13:54:13 2020 -0500 Issue #5 - sync merge with feature/gfsv16b after COMPONENT update commit 036617c8a9b5da765b82c276f7b087aa4e16d679 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Aug 19 14:24:01 2020 +0000 Issue #94 Updating the modulefiles for waves-prdgen commit d5861551ae5b1fe2c2b00802159a42f7fde06357 Merge: 9b923ac3 0e0699aa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Aug 19 09:49:08 2020 -0400 Merge pull request #109 from NOAA-EMC/feature/gfsv16b-restructure GFSv16 restructure for new $COMPONENT subfolder commit 1e76093c8554c3ccb87a7ed243f738f5763ca5da Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Aug 19 13:47:44 2020 +0000 Issue #94 adding waves-prdgen to gfsv16 commit 0e0699aac7cb00988c999546dcdf3a52b11706e3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 19 13:47:29 2020 +0000 Issue #94 - fix to messed up shebang in setup_expt_fcstonly.py commit c7a708fd54ffe60c6259f35c4230e6e73ecd6f77 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Tue Aug 18 21:16:19 2020 +0000 Issue #94 adding waves-prdgen for gfsv16 commit 0b2744e53a35c570178b7e6cd7ede72b6255c579 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Aug 14 17:36:31 2020 +0000 Issue #94 - pull in two fixes for wave job setup in free-forecast mode commit 4888001e76d24277b3a75d1d520945383f49d456 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Fri Aug 14 18:55:40 2020 +0000 updates for wave scripts to split them, also added updates from GEFS branch to add extra error checking commit 00dc1973010b68e65e176c90a1eeaef359b7beae Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Aug 14 17:36:31 2020 +0000 Issue #94 - pull in two fixes for wave job setup in free-forecast mode commit c2a4f04e50ccb45febf55f7985c64a287973dee0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 14 08:21:01 2020 -0500 Issue #5 - update for COMINsyn on Orion commit fe849e918b30e6a9ca22ebe1a81e350afc4ed6cf Merge: 0c06cda7 9b923ac3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Aug 13 18:49:52 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit 9b923ac308841d7accfc6ed2a4ef9733dce2305e Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Aug 13 18:37:51 2020 +0000 Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal commit bf0bff444bdd8a02e1c875eadbdc6b60628cff76 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 12 10:00:51 2020 -0500 Issue #5 - update to JGFS_CYCLONE_TRACKER for machine=ORION commit 0c06cda7dd667e936e8aa71fc1c584a4839094ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 10 18:50:44 2020 +0000 Issue #94 - update CFP module version on WCOSS-Dell commit b73d25224d8208291048b774a91497928b051713 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 10 17:58:55 2020 +0000 Issue #94 - update WCOSS-Dell module versions to prod_util and EnvVars commit 485ee56c1e772e8efa944ee9a3f350130d49a718 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 10 13:00:42 2020 +0000 Issue #94 - fix AWIPS file dependency commit 5a7e45e398efafb4b5b6cde0a69f799a99406d34 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 7 09:48:45 2020 -0500 Issue #5 - add missing AND condition for wavepostsbs commit bdaa28fbdc2372ed85320a4b044a33d350e2e7be Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 7 13:34:22 2020 +0000 Issue #94 - updates for FSU tracker commit e8800078f8d00e9447ed81b83eb49135110deb8f Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Aug 6 14:31:05 2020 -0500 Issue #5 - change UFS_UTILS checkout back to auth repo release/ops-gfsv16 branch after commit to it commit df20d848de2420eacba296ebdf9c9fe68d697351 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 5 15:46:27 2020 -0500 Issue #5 - fix for errant text in setup_workflow_fcstonly.py for waveinit job settings commit 4cee6f65467c34e171ed3e0bdc72458a875e5e21 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 5 17:14:04 2020 +0000 Issue #94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post commit 563d2931378c3d6276212cc9c4e2a4e9a286589c Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 4 18:19:47 2020 +0000 Issue #94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh commit 7c4f8eab074115323a7812dc498e8ea043916718 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 4 08:53:39 2020 -0500 Issue #5 - add new APRUNCFP setting to ORION.env commit 5652485ef0cc42f8814df9d08e8b953b025d08b4 Merge: 5cf8a458 d1751309 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 3 13:10:27 2020 -0500 Issue #5 - Sync merge branch '…

KateFriedman-NOAA · 2021-02-23T15:16:41Z

global-workflow CMs have decided not go use manage_externals and will wait to see the solution developed for the unified system. Keeping open until removed.

WalterKolczynski-NOAA · 2021-10-18T15:43:02Z

As soon as we remove the manage externals stuff, we can close this issue.

* Initialize 'recname' array to blank-fill array and avoid GNU compiling errors * DTC Sync: Add gtg stub routines to community makefile * DTC Sync: Use 'INCLUDE mpif.h' instead of 'use mpi' for community portability * DTC Sync: Declare 'recname' array with blanks to avoid compiling errors with GNU for community * Temporary hack for community testing until EMC provides fix * DTC Sync: Add and update initialization routines for NMM binary read. These have not been used operationally for a while. This commit is merely to sync the community and emc code bases * Link data files in run_unipost scripts for updated CRTM * First stage in removing WRF dependency: if you copy in the frame/, main/, and external/ directories from a successful WRF build, this version compiles and runs successfully * Second stage in removing WRF dependency: Now contains a new directory "wrf_io/" with its own makefile for building the relevant WRF code. Now you no longer have to pre-build WRF, only run the configure script to create a configure.wrf file. To build this version: - Copy in the external/, frame/, inc/, main/, Registry/, and tools/ directories from the RAW UNBUILT WRF source code into the new wrf_io/ directory - Copy in a configure.wrf file created with that same WRF source code Should be able to pare down the above list soon, many of them are only needed for one or two files (or perhaps ultimately none) This version was tested with the WRF V4.0 Friendly Release NOAA-EMC#3 (git hash e96ef955), but it should work for a wide range of WRF code * Adding a basic .gitignore file * AR should not be defined with flags, this can be different for some platforms * Third stage in removing WRF dependency: configure.wrf file no longer included in wrf_io makefile * Adding some makefiles to track their changes * Updating clean rules to fully clean wrf_io stuff * Fourth stage in removing WRF dependency: configure.wrf no longer required! - Added "wrf_makerules" file to be included in a couple makefiles - Contains configure.wrf preamble and postamble, but no platform-specific stuff! - Still need to copy over WRF directories, *and* properly check out the versioned files - Modified frame Makefile to remove an unnecessary compilation - Hopefully a lot more of this in the future! * Versioning WRF files in frame/ directory. No longer need to copy this directory in from WRF. * Fifth stage in removing WRF dependency: frame/ and main/ no longer need to be copied in to wrf_io/ directory - Versioned the necessary files in frame/ from the WRF build. - Moved depend.common from main/ to frame/, and versioned it - Build libwrflib.a in the wrf_io/ directory instead of wrf_io/main/ * Fix hard-coding of netCDF path. Don't think it was causing problems but hard-coding is bad, mmkay * Finally started testing other platforms/options. This commit fixes serial compile. Tests now work for options 7 and 8 (gfortran serial and parallel) - Link in already existing UPP stub mpi library files for WRF serial build - Use already existing "sw_dmparallelflag" switch from configure to pass -DSTUBMPI flag for serial builds - Remove clog.o file which is only needed for log file buffering, which is rarely used in WRF and certainly not supported for UPP. - While removing log file buffering, also remove a lot of other unsupported CPP ifdefs * Properly add serial flags. Not sure why the previous version was working... * Clean out the remnants of the platform-specific wrf_makerules. * More wrf_makerules cleanup * Even more wrf_makerules cleanup * Continuing wrf_makerules cleanup, adding to-do list under version control * Removing a lot more unnecessary make rules.; * Remove registry requirement, and version necessary tools/ files * Adding a bunch of external io source code * Remove inc/ dependency...very close to removing all WRF dependency! Move inc files to frame * Added rest of external libraries, now just testing to go! * Delete todo * Get rid of diffwrf, stub-ify wrf_debug * Remove wrf_debug completely. There, one WRF routine down, seventeen thousand to go... * Remove ESMF dependence. Lots of line savings here! * Remove WRF grib1 stuff, really making progress now! * Remove rest of WRF grib stuff, references to UPP libs from WRF * Removing fftpack * Get rid of some "undefined reference" warnings * Move module_internal_header_util and intio_tags to io_int directory * Remove module_wrf_error, add some stub routines to compensate * Remove module_machine * Remove module_driver_constants and wrf_shutdown * Tools directory removed! * Removing ioapi_share directory, redistributing necessary include files * libwrf no longer necessary * Remove a whole bunch more residual WRF crap. Mostly unnecessary and/or unused variables and CPP flags. * Remove module_wrfsi_static * Remove WRF links from unipost run script; include necessary lookup tables in parm/ directory * Remove unnecessary subroutines from pack_utils * Delete a whole bunch more unneeded flags and variables * Remove unnecessary netCDF code * Remove frame directory, final step before consolidating everything in its final location - Remove some old WRF mpi stub stuff - Move pack_utils to io_int directory and build it there - Remove a couple more unnecessary makefile items - Remove now-defunct frame directory and associated make/clean rules * Remove a test routine and an unnecessary variable * A bunch more stuff stripped out. - Remove unused variable from io_int.F90 - Remove unused module module_io_int_read - Remove old logic involving 4DVAR - Remove a bunch more unneeded/unused makefile variables * Start moving code to final location: move io_int code to wrf_io top directory * Continue moving WRF code to its final location: move io_netcdf code to wrf_io top directory * Move WRF remnants to their final location: src/lib/wrf_io * Deprecate capability to read WRF binary I/O files * Remove rest of WRF binary I/O code - Remove binary I/O code and makefiles - Add a stub "wrf_message" routine to wrf_io.F90 (the netCDF I/O routine) * Some final touch-ups to this code before rigorous testing. - Condense wrf_makerules and roll it into the main wrf_io makefile - Remove some unipost source files which are unnecessary without wrf binary IO - Remove old "Makefile_nowrf" which was from an old partial attempt to remove WRF depepndency * Remove old changes inadvertantly included in removal of WRF dependency * Update ip libraries to v3.0.0 * Update g2 libraries to v3.1.0 * Update sigio libraries to v2.1.0 * Update g2tmpl libraries to v1.5.0 * update version info/log * Updating UPP run scripts and Adding V4 Users Guide * Add GFS config files and update run scripts * Update V4 UG * Adding "-w" flag to wrf_io makefile to suppress "Unrecognized directive" warnings * Update V4.0 UG required libraries section * Bug fix for nemsiompiio format for FV3GFS processing * Edit version info for updated nemsio library to v2.2.2 and bug fix uppv4.0.1 * Nemosio fix for serial built from Laurie. * modifying scripts to use binarynemsiompiio format for FV3 * Modify error message to reflect binarynemsiompiio * Jira NOAA-EMC#121 Fix typo in Wind Energy Calculation (UPP ID 411) in MDL2AGL.f * Jira NOAA-EMC#122 Fix error that grabs incorrect EL level for TAUX/TAUY calculation in CALTAU.f * Jira NOAA-EMC#131 Fix error in pname for updraft helicity in post_avblflds.xml * Jira NOAA-EMC#132 Fix incorrect grib codes in RQSTFLD.f for wind shear variables * Jira NOAA-EMC#135 Fix allocation issue for PSFC in Block 2 of SURFCE.f * Jira NOAA-EMC#136 Fix typo in CALRAD_WCLOUD_newcrtm.f of incorrect iget ID for INSAT 3D select_channels_L call * Jira NOAA-EMC#139 Remove 10 m POT/SPFH from wrf params - not available for wrf output * Fix mods for selecting satellite channels in CALRAD_WCLOUD_newcrtm.f and SELECT_CHANNELS.f * modify makefile to conditionally add mpi stubs for serial builds, instead of always including by default * Modified GRIB1 Table lyx doc for available satellite channels/levels * Fix allocation issue for PSFC in Block 2 * Fix mods for selecting satellite channels in CALRAD_WCLOUD_newcrtm * Fix grib codes in RQSTFLD.f for wind shear variables * Fix incorrect EL level for TAUX/TAUY calculation * Fix typo in Wind Energy Calculation (UPP ID 411) * Fix index for SEVIRI * Fix index for SEVIRI * Manual sync of EMC mods to comupp * Add new routines to makefile * Update crtm submodule to v2.2.3.1_subset tag to include GOES-R/abi* fix files * Add abi* coefficient files to run scripts for GOES16 products * Remove extraneous great than sign * Comment out #if for testing. PGI and GNU fail with this syntax * Remove extraneous greater than sign * Revert MXLVL back to 70. Comment out #if 0 lines. * Remove nmm-binary read file. No longer supported * Add community contorl filse and update others * Chain make commands with "&&" instead of ";", this prevents infinite loop when you call clean script under certain circumstances (like when you forget to check out the crtm submodule) * Initial progress in new build system: - add NCEPLIBS_DIR environment variable into configure.upp - use NCEPLIBS_DIR to point to external build of wrfio libraries - Remove our build of wrf_io in favor of external build Compile tested only on Cheyenne, gnu compilers for now * Missed one change to properly build with external WRF libs * Removing netCDF discovery dialogue. We should not try to be cute or clever. If the user wants NETCDF they should be able to set a variable or make some links. * Revamping how we check for JASPER libraries/include files. Old code incorrectly and unexpectedly defaulted to a (typically) non-existant location for JASPERLIB and JASPERINC. In keeping with the 'Let the configure script fail'(TM) philosophy I'm trying to instill here, if the user does not set JASPER or JASPERLIB and JASPERINC variables, unless one of the old default locations exists, the configure script will fail with an error message. Users can overwrite this message by setting NOGRIB2 environment variable, but support for GRIB1 will be going away in the not-so-distant future! * Deleting old deprecated makefiles clogging up src/unipost * Use consistent JASPER variables between UPP and NCEPlibs. Allow old JASPER variables for back-compatibility * Use external GRIB2 (g2 and g2tmpl) library builds. Tested on Cheyenne for gnu compilers so far. * Got unipost to build with all (possible) external libraries * ndate and copygb also build with external libraries (cheyenne, gnu) * Since we no longer have a native copy of "params_grib2_tbl_new" file from g2tmpl libraries, we need to link it in from NCEPlibs in the run scripts * The big merge is here! Moved all the comupp framework to the top level. This includes the following moves/renames: comupp/c* --> configure|compile|clean comupp/makefile --> makefile comupp/arch/ --> sorc/arch comupp/src/lib --> sorc/comlibs (this includes crtm submodule!) comupp/src/unipost/makefile --> sorc/ncep_post.fd/makefile_dtc Modifications had to be made to clean/configure/compile scripts, as well as the community makefiles and Config.pl, to accomodate the new directory structure and naming schemes. Additionally, there was one divergence point between the community source code and the ncep source code: GFSPOST was split into GFSPOST and GFSPOSTSIG. This version compiles successfully, but the merge is not really finished. Lots more work before this is considered a complete merge. * Remove top-level makefile to simplify things * Removing the last of the external libraries * Under comupp, moving contents of docs/ parm/ and scripts/ to corresponding top-level directories. A few files in comupp/parm/ remain since they have files in the top-level parm/ that have differences; Tracy is sorting those out. * Modify clean and compile scripts for proper directory navigation; this was causing the clean script to fail to remove the old configure.upp file * In clean script, only try to find custom make command if configure.upp exists and is not empty * Overhaul ncep_post build script: use bash instead of sh, machine name is now a command-line argument * Using feedback from Tracy, removing or renaming the rest of the files in comupp/parm. Now everything should be in the top-level parm/ directory * Add top-level .gitignore file so git will not track compilation files such as configuration files, .exe, .o, and .mod * Updating community runscripts - Copy compiled executable to exec/ directory instead of bin/, mirroring ncep build - Update runscripts - Replacing references to ndate with `date` utility (thanks to Ka Yee Wong) - Removing references to copygb - Reference new location of executable in exec/ rather than bin/ - Reference post_avblflds_comm.xml rather than post_avblflds.xml Did not update global runscript as this appears to be unsupported anyway * Should not try to set NETCDF environment variable; if it was not already taken care of in the configure step something has already broken anyway * Convert clean and compile scripts to bash to match other scripts (and avoid using the non-recommended csh varieties). Also a bit of cleanup of my sloppy handling of directory switching in these scripts * One more csh->bash change: need to use !-s test instead of -z * A few more tidying changes for clean: restore use of printf to get newlines, echo all the clean -a remove statements * Allow ncep_post compilation from ./compile script by providing argument * Removing the last of the comupp remnants * Fix dumb mistake: need to actually create the exec directory we want to use! * Add Darwin, gnu stanza to configure.defaults * Accidentally removed last NULL stanza from configure.defaults; this could cause weird failures * Prepping configure architecture to allow individual locations of NCEP libs to be specified - Rather than just setting NCEPLIB_DIR in configure.upp, now use that environment variable to set the library and include files in configure.upp - Remove old, obsolete definition of WRF_DIR in configure.upp * One last overhaul of configure system - Add framework (but not functionality) for NCEP libraries to be linked individually - Handle the inclusion of NCEPLIBLIB and NCEPLIBINC in configure script rather than Config.pl - This will allow easier handling of multiple library and include paths once the full functionality is added - Gracefully handle unsupported platforms; if OS/MACH combo is not available don't even use Config.pl * Forgot to remove some debug prints from configure script * Continuing overhaul of configure system to allow linking of libraries individually - Set up array of required directories, and remove directories as they are detected. If all required directories are found with the appropriate files, NCEPLIBS is not required - This is only completed for library files, not other required files - Fix sed issues that wouldn't substitute properly for strings with spaces in them - Add in an echo line that somehow got removed * One final intermediate commit on new config system before the big finale - Forgot to add exit statements to failure conditions when library files are missing - Accidentally left some important lines commented - Fix some indentation * Configure system now fully mix-and-match configurable for NCEP libraries - All include files now included as well. I'm kind of shocked at how few include files are actually necessary... - Use an array for directories where multiple files from the same library are needed - Remove some old comments and echo statements * A few miscellaneous improvements to configure script - Explicitly reference bash rather than sh in shebang - A few more detailed comments - Remove unnecessary assignment of input argument * More portable solution for GRIB2 table: use already existing params_grib2_tbl_new in top-level parm directory * Fix locations of params_grib2_tbl_new and crtm coefficient files * Adding version numbers and precision info to library names Since UPP specifically needs 4-byte reals in its libraries we should specify this in the library names rather than leaving it ambiguous This also follows standard EMC naming conventions so ideally we can use libraries from any source Furthermore, if a different library version is desired, it can be specified using an environment variable at configure time * Remove jasper requirement; this is obsolete since it is only needed for compiling GRIB2 libraries * Add mods from develop * Update dtc makefile to compile new routines * Add check to configure script to ensure CRTM submodule has been checked out * fix for filling a handful of 2d variables currently causing a divide-by-zero error when run in debug mode. Currently filled with 'k' which fills with zeros Needs to fill with 'll' which is what's being filled within the larger loop and different index value than 'k' * Fix ID index in WRF-CHEM SMOKE block, which currently causes failed build in debug mode * Modification to makefile for compiling new routines added from develop * Remove blank line from params_grib2_tbl_new that causes memory fault for certain cases ran with GNU * Add the flat file name (postxconfig-NT.txt) to fix the itag bug for GFS case. * Change MXLVL back to 70 for COMMCODE in RQSTFLD.F * Add if-statement for imp_physics when calling GSD VIS (dependency is that imp_physics=28) * Fix the way that the parameter 'rg' is read in, should be read in from params.F * Temporarily restoring the ability to run build_ncep_post.sh without an argument. * Turn off 2 fields not available for ARW, which were causing seg faults during run time * Initialize n_clouds=0 and print msg, when not defined for certain mp_physics * 1) Initialize variables as zero that were not initialized for ARW, causing failures in debug mode 2) Comment out 2 lines in INITPOST.F that were causing failures in debug mode * Add v4.1-beta UG * Add new HWRF routine * Allocate/deallocate HWRF variables * Add HWRF variables * Add cd10 and ch10 code for HWRF * Add new HWRF vars to rqstflds * Add new HWRF routine to community makefile * Add NMM model for HWRF * WRF-NMM has no data for certain fields at the boundary. Add code to mask out the outermost rows and columns if maptype==203 * Correct typo made when adding support for advected Ferrier-Aligo microphysics * Add Himawari sensors * Removing serial option for this release * Better solution to avoid changing option numbering: if users select a serial option, output an error message * Updated submodule to new tag v2.2.3.2_subset to include Himawari files * Add Himwari sensors to list * Fix typo in grib tables * Change name of UPPV4.1 users guide * Add link to Himawari fix files in run scripts * Switch to updated Himawari fix files for testing * Updates to v4.1 UG * Fix Out of Bound Exception in GFSPOST.F (NOAA-EMC#100) * Fix out-of-bound error in tpause routine in GFSPOST.F * Fix use of undefined variables. * Updating CRTM submodule tag to include Himawari fix file * Added the FV3 netcdf option and updated the netcdf format check for FV3 option. * Update run_unipost * Update run_unipostandgempak * Update run_unipostandgrads * Update parameter files and remove some duplicate parameter files * Update scripts with bug fix for FV3GFS data and minor file link corrections * Minor updates to fields file info * Add GOES 16/17 to GRIB2 table, update release tag in UG * remove redundant line * Add extra space character to obslist to fit himarwari * Add Himawari-8 for grib2 * Link Himawari-8 coefficient files in run_unipost script * Add new HWRF routine to EMC makefile * Changed HWRF's CD/CH exchange coeff UPP IDs to 922 and 923 to avoid conflict with Himawari number set * Set n_clouds to zero to avoid crashes. This got removed in merge somehow * Remove old lyx doc files * Remove old run scripts * Initialize aerosol coeffs and remove mp check to avoid failures * Add Himawari coefficients to list of crtm files to link * Modify UPP IDs for Himawari fields to avoid conflict with other model output * Increase MXFLDS to accommodate new Himawari IDs * Fix index for Himwarai channel 7 * Add Orion and Odin back into build script * Change lowercase o to uppercase O for orion * Add Orion and Odin to list of machines * Save DTC grib2 table and restore develop branch version to be default Co-authored-by: Kate.Fossell <Kate.Fossell@noaa.gov> Co-authored-by: Wen Meng <wen.meng@noaa.gov> Co-authored-by: Tracy <tracy.hertneky@noaa.gov> Co-authored-by: Michael Kavulich, Jr <michael.kavulich@noaa.gov> Co-authored-by: kayee <kayee.wong@noaa.gov> Co-authored-by: Michael Kavulich, Jr <kavulich@ucar.edu> Co-authored-by: Tracy <hertneky@ucar.edu> Co-authored-by: Kate Fossell <you@example.com> Co-authored-by: Dusan Jovic <48258889+DusanJovic-NOAA@users.noreply.github.com>

@fossell

* Initial spack/cmake version * updated for umbrella build * tweak to findnetcdf * added include directory * updated cmake * changed to https for cmake submodule * updated cmake submodule * updated install directory * added build for libnceppost.a * modifications for macOS clang/gfortran build * updated for gnu build * udpated cmake submodule * Add RST file for UPP v4.0 * Modifying introduction * merged develop in and separated library from executable in build * Update CMakeLists.txt files to support GNU compilers * applied patch from Dusan * Add conf.py for upp documentation * Add index.rst for upp documentation * Add readthedocs config file * Modify name of main rst doc in index for readthedocs build test * Change master file to index * Edits for UFS documentation to remove WRF and grib1 references * Add a readthedocs config file * Mods to config and index files for use in readthedocs * Update submodule pointer for cmake * Remove old GNU makefiles with problematic names (only differing in case from existing files) * Add files for GRIB2 table of fields * Update .gitmodules, add branch = ufs_release_1.0 for cmake * Update .gitmodules for testing, code review and merging * Update include/lib flags for sigio, sfcio, nemsio * Add REQUIRED attribute to find_package calls in CMakeLists.txt * Comment out LAPACK dependency in CMakeLists.txt * Revert change to .gitmodules, update submodule pointer for cmake * sorc/ncep_post.fd/CMakeLists.txt: change GFSIO_INC to GFSIO_INC4 * Add capacity of detecting scaning mode north2south vs south2north in gaussian grid from Dusan. * Re-factor CMake * Fix library linking * small fix to kyles refactor * Add capacity of detecting scaning mode north2south vs south2north in gaussian grid from Dusan. * Fix typo in sorc/ncep_post.fd/CMakeLists.txt * Fix how Intel compile options with spaces in them are handled * Update branch name for cmake submodule, update submodule pointer * Update submodule pointer for cmake * Update .gitmodules and submodule pointer for cmake, bugfixes for CMakeLists.txt * Update submodule pointer for cmake * fixes problem linking ncep_post with gnu/openmpi * Update submodule pointer for cmake * Revert .gitmodules change * Bugfix: comment out debug print statement that can lead to out-of-bounds access; update submodule pointer for cmake * Update submodule pointer for cmake * OpenMP bugfix, use lowercase in find_package(CRTM) * Fix post crash on macOS: use allocatable array * Update submodule pointer for cmake * Add UFS UPP rst documentation * Update submodule pointer for cmake * Rename g2tmpl_d to g2tmpl (NOAA-EMC#89) * Update submodule pointer for cmake * cleanup post Change-Id: Ie52af5ff79ac4122e79d7a46e89ee2077188b0a4 * we dont depend on C HDF5 library. remove. Change-Id: I26aa7c0bf7ed2783de1a9967d961d0260dee8b54 * use transitive properties. apply OpenMP flags if OpenMP is found. Formatting using cmake-format Change-Id: Ic08ce6bc85a7d949c779ec597241c8cb4c20db86 * add debug gnu flags. compile_definitions does not like the quotes around long long, remove Change-Id: Iccd5bb496944f75a79500729051dd571303cb50f * Update CMakeLists.txt * Update submodule pointer for cmake * Update submodule pointer for cmake * Add LGPL license to repository * EMC_post is a Fortran only project. blockIO.c is not used, so do not include in building * Update submodule pointer for cmake * Bug fix for unary operator in INITPOST_GFS_NEMS_MPIIO.f. (NOAA-EMC#92) * Remove old unused makefiles * CMakeLists.txt: install postxconfig-NT-GFS-F00.txt and postxconfig-NT-GFS.txt in share directory * Update version @fossell says post is at version 8.0.0 * Update submodule pointer for cmake * Fix Out of Bound Exception in GFSPOST.F (NOAA-EMC#100) * Fix out-of-bound error in tpause routine in GFSPOST.F * Fix use of undefined variables. * Feature/cleanup (NOAA-EMC#95) * cleanup post Change-Id: Ie52af5ff79ac4122e79d7a46e89ee2077188b0a4 * we dont depend on C HDF5 library. remove. Change-Id: I26aa7c0bf7ed2783de1a9967d961d0260dee8b54 * use transitive properties. apply OpenMP flags if OpenMP is found. Formatting using cmake-format Change-Id: Ic08ce6bc85a7d949c779ec597241c8cb4c20db86 * add debug gnu flags. compile_definitions does not like the quotes around long long, remove Change-Id: Iccd5bb496944f75a79500729051dd571303cb50f * Update CMakeLists.txt * EMC_post is a Fortran only project. blockIO.c is not used, so do not include in building * Update version @fossell says post is at version 8.0.0 * Revert "Feature/cleanup (NOAA-EMC#95)" This reverts commit 7e9797b355d2b86ea9e274534f86adc42e866b95. * remove unused compile definitions and update cmake pointer Change-Id: Ie47cf16ebc25928bf30bfd05d4f25678219571a6 * Fix ID index in WRF-CHEM SMOKE block, which currently causes failed build in debug mode * remove unnecessary commented line * NetCDF static fix (#1) * CMakeLists.txt: add MODULE to find_package calls * Cleanup of NetCDF in CMakeLists.txt * update cmake submodule pointer Change-Id: I763882fd6ecc4b8cc64a60eddabccfdb7046040d * Add MODULE to find_package(NetCDF) call (NOAA-EMC#3) * update cmake submodule pointer Change-Id: I69015efa425658645567e9d9f22d5e51301c1a0b * Change version from 8.0.0 to 1.0.0 * fix the install path of compiled Fortran module files Co-authored-by: Mark A Potts <mark.potts@noaa.gov> Co-authored-by: Dom Heinzeller <climbfuji@ymail.com> Co-authored-by: Mark Potts <33099090+mark-a-potts@users.noreply.github.com> Co-authored-by: Tracy <hertneky@ucar.edu> Co-authored-by: Kate Fossell <fossell@ucar.edu> Co-authored-by: Dusan Jovic <dusan.jovic@noaa.gov> Co-authored-by: Wen Meng <wen.meng@noaa.gov> Co-authored-by: Dom Heinzeller <dom.heinzeller@icloud.com> Co-authored-by: Kyle Gerheiser <kgerheiser@icloud.com> Co-authored-by: Mark Potts <mpotts@redlineperf.com> Co-authored-by: Kyle Gerheiser <3209794+kgerheiser@users.noreply.github.com> Co-authored-by: Dom Heinzeller <dom.heinzeller@noaa.gov> Co-authored-by: Tracy <tracy.hertneky@noaa.gov> Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com> Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com> Co-authored-by: Dusan Jovic <48258889+DusanJovic-NOAA@users.noreply.github.com>

* Turn on GSD cloud ceiling calculation for RRFS dev. * Updates to UPP for RRFS applications (NOAA-EMC#3) * Updates to UPP for RRFS applications: 1) Adding a RRFS-specific .xml control file and a corresponding .txt flat file. Note that script changes (pending) are needed to leverage the new flat file. However, this code will work in current real-time configurations. 2) Adding GSL experimental ceiling diagnostics, GSL visibility diagnostic, and GSL sea-level pressure reduction (MAPS). Also adding TKE and aerosol number concentrations. 3) Code clean-up for ceiling-related diagnostics; added comments, etc. 4) Removing several non-needed variables, originally inherited from FV3-SAR community configuration. * Updating UPP control files to specify GRIB2 generating center as "noaa_fsl_boulder" and the generating process as "hrrr". The "hrrr" specification is temporary, and will eventually be switched to "rrfs" once required changes to the "NCEPLIBS-g2tmpl" library are available. (NOAA-EMC#4) * Fix some out-of-bounds reads that caused the RRFS UPP to crash. (NOAA-EMC#5) * Adding README file (NOAA-EMC#7) * Adding README file to describe process of making a "flat" file. * Updates to README to improve explanation of input/output files. * Code to read in Flash Flood Guidance (FFG) and Average Recurrence Interval (ARI) precipitation datasets for comparison with model QPF within UPP. * Fixed a syntax error in SURFCE.f * Getting rid of GRIB1 output option to be consistent with rest of code. * Changing field numbers to avoid conflict with existing RRFS-dev1 fields. * Putting exceedance grids in flat files for testing in RRFS UPP. * Corrected the 1h and run total precip names for calculating exceedances in SURFCE.f * Bug fix in SURFCE.f if statements. * Removing changes to RQSTFLD.F since GRIB1 is no longer used in UPP. * Merging NOAA-GSL development on top of NOAA-EMC UPP for testing. * Correcting minor typos in SURFCE.f to allow testing. * Update code based on testing with RRFS cases. * Update part of the code based on current EMC develop branch for comparing the test results with the merged version.(NOAA-EMC#9) * Fixed several bugs in the code. * Modifications to SURFCE.f to check for existence of FFG files. * Bug fixes for FFG file existence check, and changes to handle rotated lat-lon grid interpolation for FFG * Bug fixes for FFG existence checks in SURFCE.f * Another bug fix for SURFCE.f * Updating XML and flat txt files to include a 65th vertical level to be consistent with updated FV3LAM model with higher model top. (NOAA-EMC#13) * Code cleanup for QPF - FFG comparison. Comparison put into subroutine. * Cleanup of SURFCE.f; moving the FFG comparisons into a subroutine. * Final cleanup of exceedance code for QPF vs FFG. * Removing some commented out variable declarations. * Additional cleanup recommended by Ming: we really only need two exceedance variables; one for 1h FFG and one for run total FFG exceedances. * Further cleanup of FFG code, simplifying to two fields (1h acc and run total acc) * Adding ARI comparison fields for 2y, 5y, 10y, and 100y ARIs. * Changes to output 9 soil levels from FV3LAM if we are running 9 level RUC LSM. * Adding flat txt file for UPP. * Commenting out the use of the ARI exceedances for now. We can switch them on later. * Bug fix in INITPOST_NETCDF.f : need to use both ncid2d and ncid3d in this subroutine! * Adding NOAA-GSL code changes on top of latest NOAA-EMC UPP. * Couple of bug fixes in NOAA-EMC code. Bugs were leading to PRMSL and -10C REFD being all zeroes. * Cleaning up code to get rid of unnecessary differences from EMC. * Putting all new GSL variables into EMC's unified post_avblflds.xml. Note that EMC's unified post_avblflds.xml does not validate using the avblflds Schema. * Updating postconfig-NT.txt file for GSL RRFS based on merged post_avblflds.xml file. * Adding RRFS control files to makefile. * Changing back scale for WEASD_ON_SURFACE to previous default, thanks to suggestion from Wen Meng. * Reverting name of cldfra based on feedback from Eric Aligo. * Reverting changes in fv3lam_post_avblflds.xml since GSL new variables are now included in post_avblflds.xml * Changing experimental ceiling level type from "ceiling" to "cloud_ceilng" * Updating 3drtma_postcntrl.xml with revised name for GSD_EXP_CEILING. This also affects postxconfig-NT-3drtma.txt. postxconfig-NT-fv3lam_rrfs.txt also changed due to changes in post_avblflds.xml * Introducing if statement for call of NGMSLP, to avoid calling unless it is needed. Co-authored-by: Ming.Hu <Ming.Hu@noaa.gov> Co-authored-by: Christina Holt <56881914+christinaholtNOAA@users.noreply.github.com> Co-authored-by: Christina Holt <Christina.Holt@noaa.gov> Co-authored-by: Jaymes Kenyon <jaymes.kenyon@noaa.gov> Co-authored-by: Samuel Trahan (NOAA contractor) <39415369+SamuelTrahanNOAA@users.noreply.github.com>

aerorahul · 2022-03-08T15:13:10Z

manage_externals needs to be tested on Orion w/ Gerrit hosted submodules.
@aerorahul to test.

…ression_tests Add regression tests for sas deep/shallow convection and satmedmfvdifq (updated version of satmedmfvdif)

…shed commit of the following: commit a9afb3607115ba35cc3c841bf48d410a048912c8 Merge: 6c9a70dc 2d13e99d Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Nov 21 15:44:02 2019 -0700 Merge pull request #279 from climbfuji/update_submodule_pointers_rdlai Initialize Leaf Area Index (LAI) from climatology and other submodule updates commit 2d13e99dc0c5a39ece155e6ac6eb2bd5ddcc1037 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Nov 21 15:43:07 2019 -0700 Update submodule pointers for ccpp/physics and FV3 commit 1653ff116ddca30b690a7375006139eab55237de Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Nov 21 12:59:39 2019 -0700 Update submodule pointers for FV3 and ccpp/physics commit caed402a8f5a6a535e58284f63f678e692f341d9 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 20 16:24:56 2019 -0700 Update submodule pointer for stochastic physics to point to the head of the master branch commit 38c66d903797bdc7dbbc99589badece212a63412 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 20 16:13:30 2019 -0700 Update FMS to the head of the GFS-FMS branch commit 29fbfcad795536eb763499ea98e9596d03c9d483 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 20 16:13:08 2019 -0700 Update submodule WW3 to point back to the NOAA-EMC version, set correct hash commit 6c9a70dcdf5da8f1f678ad17523ef7533291062f Merge: 8b1bd280 fd8b7b48 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Nov 19 20:54:26 2019 -0700 Merge pull request #278 from climbfuji/add_gsd_sar_regression_test gsd/develop: add GSD SAR regression test commit fd8b7b487a7b6a2cb3ad0a2e395aaf874b6efd8f Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Nov 19 20:53:00 2019 -0700 tests/tests/fv3_ccpp_gsd_sar: bugfix, correct name of control directory commit 86cc553107ace9e66429fbfee6e6e2a1dca88c73 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Nov 18 14:39:06 2019 -0700 tests/tests/fv3_ccpp_gsd_sar: correct list of files to check commit 43dbf0504cf5f86b9ad416e2d6358043df3863fb Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Nov 18 09:22:07 2019 -0700 Add regression test for GSD SAR commit 8b1bd2805a2543bb1a434dcc0718ca89e27ba284 Merge: c73f665b 13329bf9 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sat Nov 2 06:08:45 2019 +0900 Merge pull request #277 from climbfuji/gsd_develop_update_submodule_pointer_ccpp_physics_20191102g gsd/develop: update submodule pointer for ccpp-physics 2019/11/01 commit 13329bf9b7d8191a4e85789d52f4a6174bf61c50 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sat Nov 2 06:06:24 2019 +0900 Update submodule pointer for ccpp/physics commit c73f665b5838a2db86ba5bf65157c89f4ed90cc5 Merge: fafa77ee 0f0778d4 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Oct 28 12:54:28 2019 +0900 Merge pull request #276 from climbfuji/gsd_debug_test_and_submodule_pointer_update_20191028 gsd/develop: add CCPP GSD suite debug test, reduce timestep for Thompson MP tests, update submodule pointers commit 0f0778d4cb84150c2b1b3a2e0fe7501b897f2d9f Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 28 12:39:54 2019 +0900 Update submodule pointer for ccpp/physics commit c3c0379e1cb10b7060095b9a85c045d6b3058e8b Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 28 12:33:09 2019 +0900 Add new regression test for GSD suite in DEBUG mode commit cc2706d9c35fbbd69048c244dc0997107b9a3c78 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Oct 25 11:14:30 2019 +0900 Reduce timestep for regression tests using Thompson MP from 1200s to 600s commit fafa77eeae3696ff1fd9922b88becd3644b9dd55 Merge: f3d1f6d2 e6b48fbe Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Oct 24 11:00:48 2019 +0900 Merge pull request #275 from climbfuji/gsd_develop_update_submodule_pointer_20191024 gsd/develop: update submodule pointer, remote theia commit e6b48fbea416696a5b23f6910df2697334c8d656 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Oct 24 10:57:13 2019 +0900 Update submodule pointer for ccpp/physics commit 1bc10a8b7da94ed4d3648157ad9a8dfcef25180a Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 21 08:20:15 2019 +0900 Update submodule pointer for ccpp-physics commit b583bd011b9e4139c3ff9efc7fa0240554d39a28 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 21 08:19:12 2019 +0900 tests/rt_ccpp_gsd.conf: remove theia commit f3d1f6d212199af9eb47cd4e723eecbbdbd1f76c Merge: eac6d996 deec3095 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Oct 13 14:59:39 2019 +0900 Merge pull request #265 from climbfuji/update_submodule_pointers_20191011_1 gsd/develop: update submodule pointers for FMS and ccpp/physics commit deec3095e43efd3b1599052525a631faea17d7d0 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Oct 11 08:01:14 2019 +0900 Update submodule pointers for ccpp/physics and FMS commit eac6d996d84085d4010e8e1bfc8dff1855f9e21f Merge: 49f6c48e e49075d7 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 24 14:21:16 2019 -0600 Merge pull request #257 from climbfuji/update_submodule_pointers_gsd_develop_20190924 gsd/develop: update submodule pointers 2019/09/24 commit e49075d70b330b2a7dfa907d9bc7ad6e97a48992 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 24 14:19:43 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics commit 49f6c48edc94ba9d9ac0c143b6068ce56159cb00 Merge: 5ea40b23 221bd404 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 24 12:56:42 2019 -0600 Merge pull request #256 from climbfuji/update_gsd_develop_from_gmtb_develop_20190924 Update gsd/develop from gmtb/develop 2019/09/24 commit 221bd404496a25f133b1f4e7aaf068225dfd9446 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 24 12:51:44 2019 -0600 Update CODEOWNERS and .gitmodules for gsd/develop, update submodule pointers commit e30fc6c67c3c98ceab5b0859fe47780de0859b91 Merge: e7691783 3042e609 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 24 10:53:31 2019 -0600 Merge pull request #255 from climbfuji/cleanup_remove_thompson_satadj gmtb/develop: cleanup work 2019/09/24 commit 3042e6090e4e4b6d3f22d2e3ee0677df057263ae Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 24 09:52:12 2019 -0600 Update submodule pointer for ccpp-physics, remove Thompson MP + saturation adjustment tests commit e7691783692215fb713ba60ae2799f33a2147efe Merge: f1b4c707 d5051cd2 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Sep 23 10:16:50 2019 -0600 Merge pull request #254 from climbfuji/update_submodule_pointers_20190923 Update submodule pointers 2019/09/23 commit d5051cd2f28c7cb2df686db02664f98584c3fb70 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Sep 23 10:15:15 2019 -0600 Update submodule pointers following https://github.com/NCAR/NEMSfv3gfs/pull/251 et al. commit f1b4c70787e949ac3557a4f4f89e549574c4065c Merge: 4d78478e e86179ec Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Sep 23 09:33:06 2019 -0600 Merge pull request #251 from climbfuji/gmtb_develop_update_from_master_20190920 gmtb/develop: update from master 2019/09/20, remove TRANSITION mode commit e86179ec519baba659f29c71ea119cf010e6020c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 19:59:53 2019 -0600 Update submodule pointer for ccpp/physics commit 136b3af34a6c4c9c759fa13f49ca0009e8e9d1c4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 08:55:40 2019 -0600 Remove TRANSITION mode commit 20a5de0f2bab4ddea82df0bb2682738244ac86f0 Merge: c97254f5 31e98b23 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 07:41:07 2019 -0600 Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD commit c97254f5dc9e84281fa26098b603e3436cead0ac Merge: 4d78478e fadc8080 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 07:24:46 2019 -0600 Merge branch 'master' of https://github.com/NCAR/NEMSfv3gfs into HEAD commit 4d78478e98a4aa1e547dc714b9dd7b895f71f351 Merge: af03bb30 4c1b7e7b Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Sep 19 16:10:13 2019 -0600 Merge pull request #250 from climbfuji/update_submodule_pointers_20190919 Update submodule pointers for FV3, ccpp-physics, ccpp-framework 2019/09/19 commit 4c1b7e7b99568e8e3d19c5727e6ba41b2c3ae2d7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 19 16:08:16 2019 -0600 Update submodule pointers for FV3, ccpp-physics, ccpp-framework commit af03bb30daac3be4b6aca41043612743f66d618c Merge: 80ff65a6 5aab0bee Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Sep 19 14:40:18 2019 -0600 Merge pull request #249 from climbfuji/myj_with_dom_mods gmtb/develop: MYJ PBL/SFC, Noah MP, Cheyenne modulefiles, cleanup rt*.conf commit 5aab0bee5e2952529cafb2191f0b8c6f53ea4f43 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 18 13:54:29 2019 -0600 Update submodule pointer for FMS and ccpp/physics commit 1d09c3b363c6c0ac05cabe4ce6ec2d4cc86499ae Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 18 13:49:09 2019 -0600 Bugfix for modulefiles/macosx.gnu/fv3 commit 04321dc32e522e2ece1ddd952c5771922b45ce6a Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Sep 16 15:40:52 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit 2bc9874472eb499d7381a37782fbf3ac04af266b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Sep 16 15:37:57 2019 -0600 ccpp/CMakeLists.txt: for GNU and REPRO mode, add -g to compiler options commit 9f5a6ca3be704d40d2473f5bb8017195dbd5d93e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 17:21:26 2019 -0600 Add hera.intel to rt_ccpp_caps.conf, rt_ccpp_gmtb.conf, rt_ccpp_gsd.conf commit a747a0687153c1e69f8a741bcbdbc67eff766943 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:43:45 2019 -0600 Update submodule pointers for FV3, ccpp-framework, ccpp-physics commit 9091411f3fe01d44701545ed75d0b5fc90c313b0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:43:24 2019 -0600 Update ESMF version for macOS and linux platforms commit f1c3c4a37351e7097505cfe5ca136e4b2d5e5d2e Merge: 1aedd2bb 80ff65a6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:41:38 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into myj_with_dom_mods commit 1aedd2bb06899f3c273fb151d54e6c9c0b2bf2d8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:25:52 2019 -0600 tests/rt_ccpp_gmtb.conf: formatting changes commit 80ff65a69a144127015aa1703a73dbc123df008e Merge: a6b70173 4183ee57 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Sep 13 16:23:34 2019 -0600 Merge pull request #246 from climbfuji/gmtb_develop_metadata2html_batchconvert gmtb/develop: metadata2html batch processing commit 141f41e44c3977287808bb4d08f8adfeb2ecbcc1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:10:38 2019 -0600 Remove redundant regression test configurations commit 940b7d1a6de99438a9e5a33bab836dab52e8a0a6 Merge: 26acc72b 3c961fa0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:08:26 2019 -0600 Merge branch 'noahmp' of https://github.com/grantfirl/NEMSfv3gfs into myj_with_dom_mods commit 26acc72b9c895c28f213a73aa17dbe4a953fdaab Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:01:40 2019 -0600 Combining CCPP GFDLMP namelist template with MYJ changes, add default values to tests/default_vars.sh Remove separate regression test config for MYJ, add to rt_ccpp_gmtb.conf commit abf19ed89d7d0a84840cfccf759d2cad7b8c5526 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:00:17 2019 -0600 modulefiles/cheyenne.*/fv3: update ESMF to 8.0.0bs48, use modules instead of setting environment variables manually commit 8a1cc14102eab44fdda81daaec0c0f6ba6a60a51 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 15:59:30 2019 -0600 ccpp/suites/suite_FV3_GFS_2017_myj.xml: update with stochastic_physics and UGWD changes commit 3c961fa0bcf21dc5e5020b1a326caf47c580c58b Author: Grant Firl <grantf@ucar.edu> Date: Fri Sep 13 14:52:04 2019 -0600 add noahmp tests to rt.conf and rt_ccpp_gmtb.conf commit db00f41e14c62aeadad503119e95f287562bd4d7 Merge: b34799b2 282ad6b6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 10:46:04 2019 -0600 Merge branch 'myj_from_qingfu' into detect_machine_cheyenne_update_20190912 commit a6b701733c4b1571a8a54c12db2142b3b5f9b815 Merge: 079b0b14 b34799b2 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Sep 13 09:37:14 2019 -0600 Merge pull request #247 from climbfuji/detect_machine_cheyenne_update_20190912 gmtb/develop: update tests/detect_machine.sh for Cheyenne commit b34799b26f6c956adc313027ffd6c51204e19acb Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 21:17:03 2019 -0600 tests/detect_machine.sh: detect cheyenne with and without .ib. in hostname commit 4183ee576bfedea4fec85c72d3f0d8f26c2900e7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 15:38:08 2019 -0600 ccpp/config/ccpp_prebuild_config.py: remove outdated version number from comment commit 92d6056d8b90d98e3ae2ffca275d5767f634b449 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 08:45:09 2019 -0600 Update submodule pointer for ccpp/framework commit 25486e833de3d752824ef391474f939daf370ca4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 08:44:55 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add new variable METADATA_HTML_OUTPUT_DIR required for metadata2html batch processing commit d5dff46bb109e9a9c4707941013db1e47f221760 Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 10 17:42:35 2019 -0600 remove stochastic physics calls from suite_FV3_GFS_2017_gfdlmp_noahmp.xml commit d114de7b13be53593146c39cacf939affda4c56f Merge: 2c378470 079b0b14 Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 10 17:38:07 2019 -0600 Merge branch 'gmtb/develop' into noahmp commit 079b0b14c8dabc0e510119de4be1ab0ec0c39dc2 Merge: c28e4020 20a8a674 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Sep 8 20:44:52 2019 -0600 Merge pull request #245 from climbfuji/gmtb_develop_update_submodule_pointers_20190908 gmtb/develop: update submodule pointers 2019/09/08 commit 20a8a674fd496965423d07936039a355df1da0ff Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Sun Sep 8 20:42:53 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics commit c28e4020d3616f8b2de6d42f7b15e49a34f6e8fa Merge: 5b120105 69b55a7c Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Sep 8 20:32:26 2019 -0600 Merge pull request #243 from climbfuji/gmtb_develop_monster_merge_20190904 Convert all schemes to new metadata, merge gsd/develop, update from Vlab, update of CCPP physics with IPD physics changes, GNU portability commit 2c378470a94f672d726a865ee67fc18e61e5e86c Author: Grant Firl <grantf@ucar.edu> Date: Fri Sep 6 15:13:34 2019 -0600 move calculation of precipitation rates for NoahMP to pre-NoahMP scheme rather than GFS_MP_generic_post for B4B testing commit 69b55a7c7c39ece01f97fef334012cbcc5a6e079 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 5 21:48:25 2019 -0600 Update submodule pointer for ccpp/framework commit e67e618bb89dd396235e5dff186d11b458169b0b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 21:18:48 2019 -0600 Bugfix for GSD suites: replace gwdps_pre with GFS_GWD_generic_pre commit fadc80809693b39557f8ab4b75329bbf0106c519 Merge: 64f209ce 097468ca Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Sep 4 16:45:51 2019 -0600 Merge pull request #244 from climbfuji/github_master_update_submodule_pointer_FV3_20190904 GitHub master: update submodule pointer for FV3 commit 097468ca99392eb208ee90039f3fc9b1e07ce903 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 16:44:20 2019 -0600 Update submodule pointer for FV3 commit 64f209cee5a7f364d5a93df27ad8e071f7f4682d Merge: 45b389ae 8fe8d004 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Sep 4 16:41:54 2019 -0600 Merge pull request #242 from climbfuji/github_master_update_from_vlab_master_20190904 Update GitHub master from Vlab master 2019/09/04 commit a105b2c92f91557b74cf439740628cfbddbc845c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 15:41:35 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit d5c4e5faa2994d2d75c48d27121ccb5bc46b9c9e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 15:41:18 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add new dependency ccpp/physics/physics/samfaerosols.F commit bd52519b589955ecf40e8e3dc2dfe6b087419210 Author: Grant Firl <grantf@ucar.edu> Date: Wed Sep 4 13:36:21 2019 -0600 add noahmp-specific rt.conf commit 7d142eb30608f14e8a2a7995f8f37bd8b52445af Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Sep 3 01:39:37 2019 +0000 NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951 commit da04e9ae8ecd7448732903b138ae29a675509b37 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 11:04:02 2019 -0600 ccpp/suites/suite_FV3_GFS_v15_gf.xml: fix merge conflict commit 3b81d224bdb9b33a7b5743a6c7f1bd836d46cb26 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 11:00:34 2019 -0600 ccpp/suites/*.xml: remove stochastic_physics and stochastic_physics_sfc schemes from new SDFs commit 3c247950ad1ddcfe34a3f9a53f53127309a5b3d1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 10:57:18 2019 -0600 Update submodule pointers for ccpp/framework and ccpp/physics commit 8fe8d0041c672b12da0e360f59ab2aa746efbef2 Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Sep 3 01:39:37 2019 +0000 NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951 commit 7b9cd36b2d17dfbe7693b1669077c7a07b4b8342 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 10:11:08 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add sfc_cice scheme commit 79e5cd20c3b40effb990573a013e040b03ccb08b Merge: b9e05586 5ea40b23 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 09:18:44 2019 -0600 Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion commit b9e05586d33eac6902fb3e64d7646489c3b25fe1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 08:22:02 2019 -0600 modulefiles/macosx.gnu/fv3: improve setting compilers so that it works when MPIF90 etc are not set commit ceef678c966308e22ba2d08fd26a6526e6f4064b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 08:18:39 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add ccpp_types to converted metadata dictionary commit 0aafc0a34ed6649d8e54d058f96e83712162bbda Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 3 15:08:02 2019 -0600 update SDF using noahmp commit 99626b8c2da1a22d6abb9da32cc3fc9168614ba7 Merge: 235b712b 5b120105 Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 3 15:06:00 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into noahmp commit caa9037ab43b21fd727d1d030b4cef9ecab7f1d3 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 10 08:05:30 2019 -0600 compsets/fv3.input: set variables DO_SPPT, DO_SHUM, DO_SKEB, DO_SFCPERTS for fv3_stochy test commit bf8c2ded4b6779c9e1446507057f38a384b98167 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 9 14:33:37 2019 -0600 parm/input.nml.IN, tests/tests/fv3_stochy: add new namelist options do_sppt, do_shum, do_skeb, do_sfcperts to namelist template, set for fv3_stochy test commit 85b7a7a2c32a19971ac89255f9b9d595829902a7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 9 14:31:48 2019 -0600 ccpp/config/ccpp_prebuild_config.py, ccpp/suites/*: remove stochastic physics from CCPP config and suite definition files commit d33df0427b1d6df35ff92edcab2e152d08499f15 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 9 14:30:55 2019 -0600 Add new submodule stochastic_physics, located in directory with same name commit c061af4a2d8f1a8318ca40aacdfb25ccec353f15 Merge: 2483ed32 5b120105 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 3 09:22:32 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion commit 5b1201056ec3187c04f7edb9d8afaac2465b4e9b Merge: 0ab90a12 fd7d0f1e Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 3 09:19:54 2019 -0600 Merge pull request #239 from climbfuji/gmtb_develop_update_from_master_20190830 gmtb/develop: update from master 2019/08/30 commit 2483ed324e53de72fa67de24cb1d04d492b1c862 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 3 08:31:04 2019 -0600 ccpp/build_ccpp.sh modulefiles/gaea.intel/fv3: update for gaea following wcoss_cray to avoid setting NETCDF and HDF5 in modulefile commit 45b389ae0e2fea91bb71edcceef481601827a5c5 Merge: 257f2a2e ce0c61f6 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 3 08:23:51 2019 -0600 Merge pull request #240 from climbfuji/update_submodule_pointer_in_NEMSfv3gfs_20190903 master: update submodule pointers for FV3, NEMS, WW3 commit ce0c61f644c95afc7f8dfa49ce6678d40356f54b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 3 08:22:21 2019 -0600 Update submodule pointers for FV3, NEMS, WW3 commit 257f2a2eec6f9ca902c4a2aac9fd312f24470d9b Merge: a1a54d1f 95583de5 Author: Laurie Carson <carson@ucar.edu> Date: Mon Sep 2 14:15:08 2019 -0600 Merge pull request #238 from climbfuji/update_from_noaaemc_dev_20190830 Update GitHub NCAR master from Vlab master commit fd7d0f1e022c60a010691a51dbc866b82a48c1c1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 15:43:28 2019 -0600 Update submodule pointer for ccpp-physics commit 15c64a190aa7af38dce3a9154d7bae9bbe1e381c Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Aug 27 20:23:05 2019 +0000 NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2) Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d commit 50962a88c93b90930d747e1e007f10c21b042fdb Author: Jun Wang <jun.wang@noaa.gov> Date: Sun Aug 25 02:56:05 2019 +0000 NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3 Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9 commit 5f481c8f5a36a2c0ae56dd02645bd5ec591dcc6f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 15:33:53 2019 -0600 Update .gitmodules to point to NCAR repro and branch gmtb/develop for new submodule WW3, update submodule pointer commit 872693bea7e160edb478b05cfb68e96e3671ec8c Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 20 12:10:34 2019 +0000 NEMSfv3gfs: this commit refs #65894, adding WW3 commit 95583de5ce6c4cbb83abe35b969476ba88628cca Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 11:29:32 2019 -0600 Add default branch develop for WW3 and update submodule pointer commit a2fc15ec2140ef5b5e80dc4bd4b2d88430a9d59d Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Aug 27 20:23:05 2019 +0000 NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2) Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d commit c15a5f76e78c08c68e3afb0d5e5194f55dcdd855 Author: Jun Wang <jun.wang@noaa.gov> Date: Sun Aug 25 02:56:05 2019 +0000 NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3 Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9 commit 100dc801cb2901618f778720c6ad4426070ce4c7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 10:17:47 2019 -0600 Update .gitmodules so that WW3 points to the NCAR repository commit 25aa6fe7d55240903a132fc81dd9fb9b8aca0631 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 20 12:10:34 2019 +0000 NEMSfv3gfs: this commit refs #65894, adding WW3 commit 0ab90a125b63b89d29bb73e0f640000b6c5b74a0 Merge: cee7b3fe b77f1471 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 30 07:42:51 2019 -0600 Merge pull request #237 from climbfuji/gmtb_develop_update_submodule_pointers_20190830_1 gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics commit b77f14719ac17b564f85d69383c99b8b161de817 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 07:40:55 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics commit cee7b3fe354e07a29dbc9fa49235d909f4cf528a Merge: f4671a1c d02d0c16 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 30 07:39:01 2019 -0600 Merge pull request #234 from climbfuji/bugfix_rt_conf gmtb/develop: bugfix for rt.conf commit a1a54d1f5159aa927ac4d4b01abaa6548040ff52 Merge: 8a1e235d ed0c436a Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 29 15:32:08 2019 -0600 Merge pull request #236 from grantfirl/master add Julie as codeowner commit ed0c436ad2aa1c52a6a6a5fa1ca7a9fc210956d3 Author: Grant Firl <grantf@ucar.edu> Date: Thu Aug 29 15:00:06 2019 -0600 add Julie as codeowner commit f4671a1c9f394609f33e0f04a893ab1a8147f8bb Merge: ea22d467 a667940f Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 29 14:58:30 2019 -0600 Merge pull request #235 from grantfirl/gmtb/develop add Julie as codeowner commit a667940f9cfff12e41cb5134f86e66babc76081f Author: Grant Firl <grantf@ucar.edu> Date: Thu Aug 29 14:52:42 2019 -0600 add Julie as codeowner commit d02d0c1679ffd3b57b2d2d049f86efdc531b51fd Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 29 08:06:47 2019 -0600 Update submodule pointers for FV3 NEMS ccpp/physics commit 65238966d6c574b314bc1b0e487e59f78d9b5552 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 29 08:06:02 2019 -0600 tests/rt.conf: bugfix, correct name of suite FV3_GFS_2017_gfdlmprad_gwd to FV3_GFS_2017_gfdlmp_gwd commit 282ad6b657ff250eefba8092975b484681479d8a Author: Qingfu Liu <Qingfu.Liu@noaa.gov> Date: Wed Aug 28 19:53:24 2019 +0000 correct file content tests/tests/fv3_ccpp_gfs_myj commit 29993a06e32ea08b588bed93d7e088ea386daf7c Author: Qingfu Liu <Qingfu.Liu@noaa.gov> Date: Wed Aug 28 19:49:13 2019 +0000 correct file content tests/tests/fv3_ccpp_gfs_myj commit 5ea40b233539ed0b8a86d8ef54ed59cba4c89621 Merge: e06da970 01f6a0f8 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 16:40:43 2019 -0600 Merge pull request #232 from climbfuji/gsd_develop_update_submodule_pointers_20190827 gsd/develop: update submodule pointers for FV3 and ccpp/physics commit 01f6a0f87727751a8252a576bceed7bc5b9729a7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 16:39:04 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit ea22d467cb4e6289768ca625133f68d803cc4772 Merge: 8ba3d4ae 3150c4b4 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 16:32:58 2019 -0600 Merge pull request #231 from climbfuji/update_submodule_pointers_gmtb_develop_20190827 gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/physics commit 3150c4b432ac93119c578a1d0cb12a7b0e1e3fd6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 16:30:38 2019 -0600 Update submodule pointers for FV3 NEMS ccpp/physics commit 8ba3d4ae5bfd786895d54c26f398821d28601821 Merge: 6aba4551 f91d7846 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 15:45:47 2019 -0600 Merge pull request #230 from climbfuji/hera_update_20190827 gmtb/develop: update hera config, enable regression testing commit f91d78461f1608bfdbe1de0d38a9527f8381cea7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 15:04:42 2019 -0600 Update submodule pointer for NEMS commit 235b712ba15d59c4d56aa990d3a9edeb30999496 Author: Grant Firl <grantf@ucar.edu> Date: Mon Aug 26 15:40:00 2019 -0600 add CCPP-based NoahMP test to RTs for rt_ccpp_gmtb.conf (plus new SDF based on suite_FV3_GFS_2017_gfdlmp.xml) commit e74e0d2ebd6430e39c2f869c7241be858776f385 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:53:55 2019 -0600 Update submodule pointer for NEMS commit 290a484f1e3be763aced44c2dfd099c6d832ce2e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:53:33 2019 -0600 rt_hera_test.conf: temporary regression test config for testing on hera commit c52d27b0d8e99029d1e723ecde07d3ba0813da09 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:52:20 2019 -0600 tests/rt.sh: enable regression testing with rt.sh, changes from Ratko, update STMP and PTMP for GMTB commit 6b9508c93f81383418ad1b779ce8d4bc2358aba4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:48:01 2019 -0600 modulefiles/hera.intel/fv3: update path to modules following transition from Juno test system to hera commit eb229d3cb145a7811d69348cb2167fbd5a5a097d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:47:33 2019 -0600 ccpp/build_ccpp.sh and conf/configure.fv3.hera.intel: don't use the AVX512 flags yet on hera commit 6aba455146a4a8d4629704e5226570116091691f Merge: 5c289838 75b5715e Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 07:17:17 2019 -0600 Merge pull request #229 from climbfuji/gmtb_develop_update_submodule_20190827 gmtb/develop: update submodule pointers for FV3, ccpp-physics, ccpp-framework commit 75b5715e41c6f978defaa04e38d41b8d20326488 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 07:15:40 2019 -0600 Update submodule pointer for FV3, ccpp-physics, ccpp-framework commit 5c289838c1bc9d443319e4cdad4b23df5215fc77 Merge: eb7b7ae8 48000a93 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 07:13:20 2019 -0600 Merge pull request #218 from bluefinweiwei/cires_ugwp UGWP Version 0 commit 51299cadc6514199225605df04246e54446d6486 Author: Qingfu Liu <Qingfu.Liu@noaa.gov> Date: Tue Aug 27 11:03:43 2019 +0000 add MYJ surface layer scheme and MYJ PBL scheme to CCPP commit 75596f60b0d684413cf8a6f42567cd92195b3661 Author: Grant Firl <grantf@ucar.edu> Date: Mon Aug 26 13:34:15 2019 -0600 remove noahmp_pre.F90 from CCPP config since code was moved to existing interstitial scheme commit d913c69b7e11b23f5666c4f8432a6e0c80fe7036 Author: Grant Firl <grantf@ucar.edu> Date: Fri Aug 23 18:04:07 2019 -0600 remove module_wrf_utl.f90 from ccpp_prebuild_config scheme dependency list commit 48000a93dfd9b07159d3d006016c854e14a20886 Merge: 266c9885 e38eda36 Author: Weiwei <42526954+bluefinweiwei@users.noreply.github.com> Date: Fri Aug 23 13:53:36 2019 -0600 Merge pull request #3 from climbfuji/ugwd_dom Delete tests/rt_with_ugwp.conf commit e38eda36b8d1d7181400059c3d7cc1af3511534d Merge: 789ab6bc 266c9885 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 13:50:02 2019 -0600 Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into ugwd_dom commit 789ab6bc2ae4e04cdeaa580abbb0cbcf0c4d9cb7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 13:48:59 2019 -0600 Delete tests/rt_with_ugwp.conf commit 266c9885f97153154fa6caaaf0bbac87addda38b Author: Weiwei <42526954+bluefinweiwei@users.noreply.github.com> Date: Fri Aug 23 13:47:39 2019 -0600 Delete rt_ugwp_only.conf Removed. commit b27a08aa3d2544024a0fb6adf0a38d339ac3a18c Merge: 5ffd3ed8 adc9df36 Author: Weiwei <42526954+bluefinweiwei@users.noreply.github.com> Date: Fri Aug 23 13:22:27 2019 -0600 Merge pull request #2 from climbfuji/ugwd_dom UGWD update for open PR to gmtb/develop commit adc9df36fbe5a866bcab77f709d368286d2a496d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 11:59:13 2019 -0600 Update submodule pointers commit 4410e285d4f0a99a68f2da799fa8d9d117e8ef1a Merge: 1499c32c eb7b7ae8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 09:34:58 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into ugwd_dom commit 1499c32c862f4471a72c85204208d01c847f8d2d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 09:11:39 2019 -0600 Update submodule pointers for FV3, ccpp/framework, ccpp/physics commit 7ae19849e6a6365adab0642e674a3e16b04cbbf3 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 09:10:02 2019 -0600 ccpp/suites/*: rename gwdps_pre to GFS_GWD_generic_pre, remove duplicate UGWP test, rename CCPP UGWP test to match existing IPD test, update regression test configuration files commit eb7b7ae83ec4cc828f640810512ab528f6f7a7c8 Merge: 91e485ca cb382b97 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 23 07:52:49 2019 -0600 Merge pull request #226 from climbfuji/update_submodule_pointers_gmtb_develop_20190823 gmtb/develop: update submodule pointers for FV3 and ccpp/framework 2019/08/23 commit cb382b97d933d35a3b40ab7dfa6428079ce810fa Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 07:50:39 2019 -0600 Update submodule pointers for FV3 and ccpp/framework commit 91e485cac197bb902c095770526dfc503f09f028 Merge: 00168544 4741dd2f Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 23 07:49:50 2019 -0600 Merge pull request #225 from climbfuji/github_gmtb_develop_wcoss_cray_gaea_jet_cheyenne_20190819 gmtb/develop: bugfixes and updates for wcoss/cray/gaea/jet/cheyenne commit 4741dd2f282be63e8e3ceefc0c1e8ad3deb487ab Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 22 16:25:46 2019 -0600 modulefiles/theia.intel/fv3: workaround to fix EMC's broken yaml-cpp module commit 0dd206c8fc9afde82ee11d145e6021e5e36a6d10 Author: Grant Firl <grantf@ucar.edu> Date: Thu Aug 22 13:40:10 2019 -0600 add noahmp_pre.F90 to ccpp_prebuild_config.py commit 816818024cc3b512794a1a5507628157de8ce23d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 22 12:25:37 2019 -0600 doc/README_CENTOS.txt, modulefiles/linux.gnu/fv3: final touches on documentation, update of modulefiles to match the defaults in READ_{CENTOS,UBUNTU}.txt (strictly speaking not necessary) commit 0ab1908a4add63af6250cb33a68505a618a24202 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 23:20:31 2019 -0600 doc/README_UBUNTU.txt: add missing environment variables for buidling CCPP version on UBUNTU commit 6624c650b92a10bbbe282bf8f3f10618c4d4630c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 22:09:22 2019 -0600 doc/README_{UBUNTU,CENTOS,MACOSX_*}.txt: add note that 'make check' for ESMF is optional and that it can take a very long time commit 3893de3c5e7e7c561017cf0a6428c41ac07f7704 Author: Grant Firl <grantf@ucar.edu> Date: Wed Aug 21 11:39:39 2019 -0600 update ccpp_prebuild_config.py for NoahMP commit 7415d501a0d9ba1a1ef4235f15141cf254ca4eb5 Merge: 00168544 5ffd3ed8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 14:24:29 2019 -0600 Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into HEAD commit 6151127e825b9c195a2e3088989910359736355f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 12:29:42 2019 -0600 doc/README_CENTOS.txt: instructions for configuring CentOS linux systems, similar to the existing Ubuntu Linux instructions commit 0d4dd7f1140793f21e9bb7989cf4ada7fb4f0245 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 11:27:38 2019 -0600 doc/README_UBUNTU.txt: update documentation to latest state, simplify installation of netCDF commit 1d9d132652c04a8c1c7ad8f4393cb7fb7d31f4a1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 11:25:51 2019 -0600 tests/rt_ccpp_gmtb.conf: remove PGI compiler, this allows to remove multiple entires for runs that only work with Intel and GNU; remove wcoss entries (no dynamic builds), replace gaea (no dynamic build) with jet commit f9ebd24090c38d5037d315f42b5b2f7029c0437b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 10:03:28 2019 -0600 tests/rt_ccpp_gsd.conf: enable running GSD regression tests on other platforms than theia (regression test baseline now contains GSD input data) commit b2a7580ced26fd21dd9b98688911747e89cfe10b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 10:00:35 2019 -0600 tests/rt_ccpp_caps.conf: remove PGI commit d1e2b5c8f23cb5c1c78186270b39c54540fcf8c6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 09:58:44 2019 -0600 conf/before_components.mk, modulefiles/theia.gnu/fv3: replace user-based libraries with modules located in GMTB project directory, enable theia.gnu for testing commit ffc518e0f4f139fcab0b4138f5e4b78542c25f06 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 09:56:32 2019 -0600 Update ESMF on Cheyenne, Gaea, Jet; for Jet, also remove the module load anaconda (no longer needed and causes ccpp_prebuild.py to fail) commit e64d8a75dd76d5bed8c1eb47b2ae74b18ee6006f Merge: 00168544 73d2015f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 19 09:54:08 2019 -0600 Merge branch 'gaea_jet_cheyenne_support_and_initial_gnu_tests' of gerrit:NEMSfv3gfs into HEAD commit e06da970ac5fb5f177fe6e3baba9ff70e3f44ebd Merge: 18cd1a1a 175971b7 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Aug 19 08:53:49 2019 -0600 Merge pull request #224 from climbfuji/gsd_develop_update_submodule_pointers_20190819 gsd/develop update submodule pointers 2019/08/19 commit 175971b7d34d49c371f659adeba870b91628cbc0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 19 08:51:05 2019 -0600 Update submodule pointer for FV3 commit 18cd1a1aadddb816b0f8903fcb059556768b001b Merge: 9fbef48c f663d381 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Aug 19 08:48:34 2019 -0600 Merge pull request #221 from climbfuji/update_gsd_develop_with_vlab_master_20190816 Update GitHub gsd/develop with Vlab master 2019/08/16 commit 001685445cb219fd9c4565c0bc3885800c68f813 Merge: 50eca7bb df214421 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sat Aug 17 16:32:16 2019 -0600 Merge pull request #223 from climbfuji/gmtb_develop_update_submodule_pointers_20190817 gmtb/develop: update submodule pointers 2019/08/17 commit df214421c29449cb1f800ed33ffe3b7a9a87663c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Sat Aug 17 16:30:49 2019 -0600 Update submodule pointers for FV3 NEMS ccpp/framework ccpp/physics commit 50eca7bbf0cb47d05591286257acd6c5fa4c2edc Merge: de32c317 1686f099 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sat Aug 17 16:28:47 2019 -0600 Merge pull request #212 from climbfuji/make_linux_and_macos_modulefiles_flexible Generalize and update Linux modulefile, add support for hera commit f663d38105a20ddc0c60467493972c47f0aa35e9 Merge: 2a1c6868 9fbef48c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 13:47:46 2019 -0600 Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into update_gsd_develop_with_vlab_master_20190816 commit 9fbef48c1b10bc348acc0ca073248e04be7da5b5 Merge: f86243fc a995462a Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 16 13:47:28 2019 -0600 Merge pull request #217 from climbfuji/update_submodule_pointer_NEMS_20190816 gsd/develop: update submodule pointer for new NEMS repo commit 2a1c6868319d02394b1012be4fe4bd05bc77d1cd Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:59:04 2019 +0000 Fix hash to NEMS commit 9dfe49f9e0d244186055e272d1298f1e3b18c799 Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:29:12 2019 +0000 NEMS transitioned from Vlab to GitHub. NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc) Clone NEMS from new repository: git clone https://github.com/NOAA-EMC/NEMS commit ef403be0795a476ead513ff57ffb5c1f9e75aa7a Author: Ratko Vasic <Ratko.Vasic@noaa.gov> Date: Mon Aug 5 18:34:48 2019 +0000 This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko): Summary of updates in NEMS commit: -- removes 'module load slurm' commands -- Gerhard's mediator updates to run large number of ATM/MED pets and have ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089 -- Increase path size of directory for building WW3 error capturing in NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507 -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085 -- Raffaele's change on debug mode of compiling fv3_gsdchem Applications: EMC_FV3-MOM6-CICE5 -- Updated module to point to ESMFv8.0.0bs40 EMC_FV3-GSDCHEM-WW3 -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here). EMC_FV3GFS-GSDCHEM -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray NEMSfv3gfs -- Updated module to point to ESMFv8.0.0bs40 commit 9d7ddc8695a0742b4865582dabc38824b0b321b6 Author: Dusan Jovic <dusan.jovic@noaa.gov> Date: Fri Jul 26 13:51:22 2019 +0000 Fix an issue introduced in the previous commit where merge conflict markers were inadvertently committed. Change-Id: Ib699fae7acda1bbb2cf6475461b41d09a6fba578 commit b53a1117e79822ae158ba8e7f41f10b206c1bf68 Author: Jun.Wang <Jun.Wang@noaa.gov> Date: Sat Jul 20 14:17:26 2019 +0000 NEMSfv3gfs: This commits #refs 65267 adding obs-based roughness length formulations and adjustment of K for hurricane simulations Change-Id: Ia71047b284c7ae09b390a2e375b8cba94fdfc46c commit 1686f099f08ac2a7f0909c292619fededec1aabf Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 12:25:22 2019 -0600 Update submodule pointer for ccpp/framework commit 4418499222f2ba30e6965160c4e59493baa202d4 Merge: 0cd98189 4524ac0b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 12:03:42 2019 -0600 Merge branch 'update_gmtb_develop_from_vlab_master_20190816' of https://github.com/climbfuji/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible commit 4524ac0b7a4982d28e50c6cebb1b514ce6ac7b7e Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:59:04 2019 +0000 Fix hash to NEMS commit 8b114af25680fe70f8d302cac8c087e87c472b14 Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:29:12 2019 +0000 NEMS transitioned from Vlab to GitHub. NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc) Clone NEMS from new repository: git clone https://github.com/NOAA-EMC/NEMS commit f61d93cb6fb5bf5bacf6c0d6c38429bb71af4f71 Author: Ratko Vasic <Ratko.Vasic@noaa.gov> Date: Mon Aug 5 18:34:48 2019 +0000 This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko): Summary of updates in NEMS commit: -- removes 'module load slurm' commands -- Gerhard's mediator updates to run large number of ATM/MED pets and have ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089 -- Increase path size of directory for building WW3 error capturing in NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507 -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085 -- Raffaele's change on debug mode of compiling fv3_gsdchem Applications: EMC_FV3-MOM6-CICE5 -- Updated module to point to ESMFv8.0.0bs40 EMC_FV3-GSDCHEM-WW3 -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here). EMC_FV3GFS-GSDCHEM -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray NEMSfv3gfs -- Updated module to point to ESMFv8.0.0bs40 commit 8a1e235d57a13d40e8ba71d3ce174d62dfa4f265 Merge: 62eaf40f 8ad5805c Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 16 11:41:45 2019 -0600 Merge pull request #220 from climbfuji/update_submodule_pointer_fv3 Update submodule pointer for FV3 commit 8ad5805ce1c219f8ba2962d6e84403dd11dfeac2 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 11:40:27 2019 -0600 Update submodule pointer for FV3 commit 62eaf40f77eae7a450913e9aba54b967da37b9b3 Merge: a8e8fa58 f6eae698 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 16 11:36:46 2019 -0600 Merge pull request #219 from climbfuji/update_github_master_from_vlab_master_20190816 Update GitHub master from Vlab master 2019/08/16 commit f6eae698bf40e3adca1b8d95417cb2c8905df7f4 Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:59:04 2019 +0000 Fix hash to NEMS commit dcc7a818cc8a19c0ec894015c4bd0d8003768fc0 Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:29:12 2019 +0000 NEMS transitioned from Vlab to GitHub. NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc) Clone NEMS from new repository: git clone https://github.com/NOAA-EMC/NEMS commit a9cb714dd858e2d46571cd89776275847e2ced7a Author: Ratko Vasic <Ratko.Vasic@noaa.gov> Date: Mon Aug 5 18:34:48 2019 +0000 This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko): Summary of updates in NEMS commit: -- removes 'module load slurm' commands -- Gerhard's mediator updates to run large number of ATM/MED pets and have ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089 -- Increase path size of directory for building WW3 error capturing in NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507 -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085 -- Raffaele's change on debug mode of compiling fv3_gsdchem Applications: EMC_FV3-MOM6-CICE5 -- Updated module to point to ESMFv8.0.0bs40 EMC_FV3-GSDCHEM-WW3 -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here). EMC_FV3GFS-GSDCHEM -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray NEMSfv3gfs -- Updated module to point to ESMFv8.0.0bs40 commit f595bcfeb55c8503c3b3f290cb22169fe75b6065 Author: Dusan Jovic <dusan.jovic@noaa.gov> Date: Fri Jul 26 13:51:22 2019 +0000 Fix an issue introduced in the previous commit where merge conflict markers were inadvertently committed. Change-Id: Ib699fae7acda1bbb2cf6475461b41d09a6fba578 commit ae772b0a3fc5b75e3814f2328ac35139d4f4ed99 Author: Jun.Wang <Jun.Wang@noaa.gov> Date: Sat Jul 20 14:17:26 2019 +0000 NEMSfv3gfs: This commits #refs 65267 adding obs-based roughness length formulations and adjustment of K for hurricane simulations Change-Id: Ia71047b284c7ae09b390a2e375b8cba94fdfc46c commit 5ffd3ed8b437297040036dc835f86142da8e8879 Author: Weiwei <weiweili@ucar.edu> Date: Wed Jul 3 12:23:33 2019 -0600 new file: ccpp/config/ccpp_prebuild_config.py new file: ccpp/suites/suite_FV3_GFS_2017_gfdlmp_ugwp.xml new file: parm/ccpp_ugwp.nml.IN new file: tests/rt_ugwp_only.conf new file: tests/rt_ugwp.sh new file: tests/tests/fv3_gfdlmprad_ugwp new file: tests/tests/fv3_ccpp_gfdlmprad_ugwp new file: tests/rt_ccpp_gmtb_with_ugwp.conf new file: tests/rt_with_ugwp.conf commit a995462aeaa86ce2640c75b77847ff2b9709ce5e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 10:08:44 2019 -0600 Update submodule pointer for NEMS following transition of EMC NEMS repo Vlab -> GitHub commit 0cd98189b738c9d1fafef7d8c8011582fb6b677b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 09:55:10 2019 -0600 Update submodule pointer for NEMS following the move from Vlab to GitHub commit ac49f23be40492ab8908161e5c48cd7f10f6c499 Merge: a2c18766 de32c317 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 09:22:54 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible commit de32c31777ff15f0f850bcdc6b7f18e049993794 Merge: ddcf419d d1932bc5 Author: Laurie Carson <carson@ucar.edu> Date: Fri Aug 16 09:20:59 2019 -0600 Merge pull request #216 from llpcarson/update_nems Update submodule pointers for new NEMS repo commit d1932bc52876a361c3234b00bb0a18aa6039babd Author: Laurie Carson <carson@ucar.edu> Date: Fri Aug 16 09:15:13 2019 -0600 Update submodule pointers for new NEMS repo commit a8e8fa58e812f2d0fe88e05c8d278af55ff5a4bf Author: Laurie Carson <carson@ucar.edu> Date: Fri Aug 16 09:11:32 2019 -0600 Update submodule pointers for new NEMS repo, latest ccpp-physics (some SCM updates only) commit a2c1876603ea7b6e959d85d27566f7350a8398a2 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 15 17:20:11 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics commit 30a41c84d22b9f8bf03d086017c2e5d420531c59 Merge: 42be0321 ddcf419d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 15 17:17:29 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible commit 42be032139a3e79533fd78f22fedac23efacd056 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 14 16:49:50 2019 -0600 Add support for hera with juno (hera test system) modifications commit ddcf419d388d2d181aa0a9a5a2f6a9e19d41539e Merge: 1b5d9cc1 9884db3d Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 15 12:01:13 2019 -0600 Merge pull request #213 from climbfuji/update_macosx_20190811 Update MacOSX build configuration 2019/08/11 commit 9884db3d03067c73ec6f66e23769d8af25fef7a4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 14 08:33:39 2019 -0600 Update submodule pointer for FV3 commit 450819fcfcbdb624b33aa4e41fb3efcdccefd727 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 14 08:33:28 2019 -0600 doc/README_MACOSX_clanggfortran.txt, doc/README_MACOSX_gccgfortran.txt: final touches to install/setup documentation commit e46d3256356a971cbcaa3ce520327115a485a1ad Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 13 14:48:14 2019 -0600 doc/README_MACOSX_*.txt: add missing command for ESMF commit 730bdfe2286a51857b32da2a999a6f8ab51e5653 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 13 10:27:56 2019 -0600 Update submodule pointer for FV3 commit 99ef65ba88b8964bd6c757dab910710e0f0f7107 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 13 10:27:41 2019 -0600 doc/README_MACOSX_clanggfortran.txt: remove TODO reminders commit e2c20771b790076a9c932b45ba0d30204914e059 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 21:03:30 2019 -0600 modulefiles/macosx.gnu/fv3: update library versions, adjust to work with both clang+gfortran and gcc+gfortran commit 1b3302e8cdc59aa302240a0b03ecb34141202ac5 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 21:02:43 2019 -0600 doc/README_MACOSX_*: work in progress, saving progress commit 35d02b6f2842d5951122777ddb6630f4ea68959d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 21:01:46 2019 -0600 Update submodule pointer for FV3 commit f86243fce831151f943d64b7bba62391a03f89af Merge: c7dc843e a0596c86 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Aug 12 20:30:08 2019 -0600 Merge pull request #215 from climbfuji/update_submodule_pointer_20190812 Update submodule pointer for ccpp/physics commit a0596c864d8936f39a05ff314eb593211aae0b65 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 20:28:33 2019 -0600 Update submodule pointer for ccpp/physics commit c7dc843eb975f33368037556d0ecf6a55649584f Merge: 1ebaea29 3d01b44f Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Aug 12 20:26:50 2019 -0600 Merge pull request #214 from climbfuji/bugfix_ruclsm_ice_temp_landmask_landuse_inconsistencies Bugfix RUC LSM ice temperature initialization, appbuild bugfix commit ceef93aa0a0f5815bbca4a5fbf281bb4d9adefbe Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 09:23:58 2019 -0600 Work in progress: provide instructions for both clang+gfortran and gcc+gfortran on MacOSX commit 3d01b44f5b316ca5bfeb0dfa8e570074921bdfec Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 08:18:45 2019 -0600 Update submodule pointer for ccpp/physics commit d4773492a63cfe26bcb84c6d50c78e86855f4b05 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 08:17:43 2019 -0600 tests/tests/fv3_ccpp_appbuild: bugfix, add back description/control dir that were unintentially removed in a previous commit commit ae4795908cfba0955c7aed812f717cf54562cb62 Author: dom <dom@dom-loaner.local> Date: Sun Aug 11 16:07:59 2019 -0600 conf/configure.fv3.macosx.gnu, modulefiles/macosx.gnu/fv3: add flexibility by using user-defined compiler commands and library locations (through environment variables) commit 619382c41818dfee04a5ab1f5c3cafde7fab821b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 9 10:35:07 2019 -0600 modulefiles/linux.gnu/fv3: allow user to specify own locations for compilers and libraries commit 1b5d9cc192f1032d899468379569be64a7b13bd1 Merge: e8a4da85 03553110 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 1 16:27:31 2019 -0600 Merge pull request #211 from climbfuji/github_gmtb_develop_update_submodule_pointers_20190801 GitHub gmtb/develop update submodule pointers 2019/08/01 commit 0355311007afd0231f93bf5039e72d6df4125292 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 1 16:25:10 2019 -0600 Update submodule pointers for FV3, ccpp/framework, ccpp/physics commit e8a4da8588c7495408a931cce323ca3c6f5cd190 Merge: b06eeb95 ab06c106 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 1 14:46:17 2019 -0600 Merge pull request #210 from climbfuji/new_metadata_format_step1_20190725 Migrate to new metadata format step 1 commit bd4cb27b7cc39d246f1aa5c055beb2506427f601 Merge: 1ebaea29 b06eeb95 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 1 08:22:28 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into HEAD commit ab06c106e05811faf6e7ae7107769657c3e8b9e0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 31 16:26:46 2019 -0600 Update submodule pointers for ccpp/framework and ccpp/physics commit 74d98ff31771e50553e2eb31e6b8cafcfc305008 Merge: b77f1871 13619a43 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 31 15:49:32 2019 -0600 Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD commit b77f187103fbbcf25c0871a328f094f609761193 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 31 13:39:37 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add new type definition files and TYPEDEFS_NEW_METADATA configuration entry commit 73d2015f97e3730a334c532eef46f4ae2a3e4193 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Jul 22 20:49:37 2019 -0400 tests/rt.sh, tests/fv3_conf/fv3_qsub.IN_jet -> tests/fv3_conf/fv3_slurm.IN_jet: change scheduler on jet from Moab/Torque to Slurm commit 2312a74d685f0c348b71c41af86eefc6606fd196 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 15:14:44 2019 -0600 conf/before_components.mk: enable jet.intel commit e6cda943e2adc3b54005a64805c667a9185f02c4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 14:51:30 2019 -0600 Update submodule pointer for FV3 commit 0642cc07aa0808fc86a538e9b2ae8f8295e569ae Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 14:51:04 2019 -0600 tests/rt.conf: add jet.intel similar to gaea.intel commit 8607bea695293c71f879e70d910853b81b492ea5 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 14:49:21 2019 -0600 Update modulefiles/jet.intel/fv3 to use modules created by GMTB commit 1ebaea2974ba4f06f4c1c114faa03fde94c3e293 Merge: 2605f0b7 72c10102 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Jul 19 11:47:22 2019 -0600 Merge pull request #209 from climbfuji/update_submodule_pointer_20190719 Update submodule pointer for ccpp/physics commit 72c10102ce07ac8c465f571bea6a6cd5aa5fe088 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 11:45:57 2019 -0600 Update submodule pointer for ccpp/physics commit 2605f0b773ab7a862f9152a0c214f8da372e3d1e Merge: cad0f201 820e0cc2 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Jul 19 11:45:20 2019 -0600 Merge pull request #208 from climbfuji/gsd_develop_ruc_bugfixes_sar_update_surface_flux_bugfix_inactive_20190718 Gsd develop ruc bugfixes sar update surface flux bugfix inactive 20190718 commit 820e0cc2a94c9599b4a48e0f7c54900792e8cfbe Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 21:28:28 2019 -0600 Update submodule pointer for ccpp/physics commit d954359f8d36cda0306e9f51a8f5f3797945cd2f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 21:28:08 2019 -0600 ccpp/suites/suite_FV3_GSD_v0.xml: add calls to temporary interstitial schemes for RUC-sfc_sice interaction commit c3993781d192fa061dc9484342b923e149597b0f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 21:27:13 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add temporary interstitial schemes in lsm_ruc_sfc_sice_interstitial.F90 commit a8d3ec08a9ed65de0bf45d7bdd4974b7a9ae6c83 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 15:27:48 2019 -0600 conf/configure.fv3.wcoss_cray, ccpp/build_ccpp.sh: set correct REPRO compiler flags for Intel 16, pass legacy-Intel flag to cmake commit e0b77299c83e21bd38a1cf0a9cb4617e461c4af9 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:13:16 2019 -0600 tests/rt_gnu.conf: initial set of GNU-based regression tests, Cheyenne only commit 35c2ef3f34ca3ca4086d3e71b4c610b56e2659b8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:12:47 2019 -0600 tests/rt_utils.sh: update of regular expression for Cheyenne only commit 4aa66b51bde51c9ec2bb3ca0b240a8bfd71bf2af Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:12:03 2019 -0600 tests/rt.sh: temorary, change location of regression test baseline to ESRL-GSD-GMTB project directory commit ed13c0038d6bd15da146321b8ca04ab632a07abc Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:10:58 2019 -0600 modulefiles/gaea.intel/fv3, modulefiles/gaea.intel/fv3.intel-16.0.3.210: update of modulefiles on gaea for both Intel 16 and 18 for CCPP commit b99c6e2a1058fea4ea7c083bcf7ba54cd9fc62b6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:09:38 2019 -0600 Update of Intel and GNU modulefiles for Cheyenne following the major OS upgrades beginning of July 2019 commit b74241682499f54e474d087fdc6797932534f459 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:08:31 2019 -0600 conf/configure.fv3.gaea.intel: add option to use Intle 16, adjust repro flags if Intel 16 is used commit 89024d4dd5034aedec7ed197e84388e888c01a7f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:03:32 2019 -0600 conf/before_components.mk: enable gaea.intel, add switch to use Intel 16 compiler on this machine (default is Intel 18) commit 9909cd1c5711baf1a59595f3e4047aaa8b960606 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:01:42 2019 -0600 ccpp/CMakeLists.txt, ccpp/build_ccpp.sh: add option INTEL16=Y to build_ccpp.sh, which triggers a cmake flag LEGACY_INTEL to use a different fp-model option in REPRO mode commit cad0f201bf3de40b3e6b4f24a491ff18d654ac5b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 10:46:02 2019 -0600 Update CODEOWNERS to enable branch protection commit 89a0f8eaf60b393739658b9605de3194d8159a9d Merge: 259b675c c7c692c0 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Jul 17 20:50:49 2019 -0600 Merge pull request #207 from climbfuji/gsd_develop_update_submodule_pointers_20190717 gsd/develop: update submodule pointers for FV3 and ccpp/physics commit c7c692c02b8a680c6e8f7c03f0a46eee1afdbd4b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 20:49:18 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit 259b675cfd32286d7995b7c5a2483344f0e81213 Merge: cb0d5e30 75906385 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Jul 17 20:48:13 2019 -0600 Merge pull request #206 from climbfuji/add_regression_tests_20190717 gsd/develop: add regression tests for Thompson only, GF only, MYNN only & cleanup commit 759063853f2cae2173afe9234c7d04424baaafb7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:47:10 2019 -0600 tests/fv3_conf/ccpp_gsd_run.IN: add logic to use correct field table, depending on choice of microphysics schemes and whether a TKE PBL scheme is used commit 835265e06943d297959cc45645d0d5c516e675e2 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:31:47 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit bb7f8838d76dba2f3b8ef85a3015f3fa51b8dd2f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:31:32 2019 -0600 parm/ccpp_gsd.nml.IN, tests/fv3_conf/ccpp_gsd_run.IN, tests/rt_ccpp_gsd.conf: use additional namelist variables for more flexibility commit d454c1cff7d9cf740f2129620f09eddb8fe0cd30 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:29:19 2019 -0600 tests/tests/fv3_ccpp_*: add new tests for individual schemes of the GSD suite, remove increase of wallclock time on Cheyenne commit b93828f3c8f338f9bc5a56f0c67a9b88765efa74 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:28:07 2019 -0600 tests/default_vars.sh: add additional default variables for microphysics commit b06eeb95aeba76e3ad3e6210cb8b4ff81707086b Merge: f4790463 4e253679 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Jul 17 09:42:39 2019 -0600 Merge pull request #205 from climbfuji/gitmodules_add_default_branches_20190716 gmtb/develop: add default branches for submodules to .gitmodules commit 4e25367977bbfb401e604e867cafd9e3b09892f0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 16 15:15:37 2019 -0600 .gitmodules: set default branches for submodules commit cb0d5e30c0a244e1bc14b57b9dbc331b7781319d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 16 15:04:21 2019 -0600 Update submodule pointers for all submodules commit 22fd642f89cd516f177e160ecb486d6ed179a56c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 16 15:04:06 2019 -0600 .gitmodules: set default branches of submodules to gsd/develop commit f1b1245a9f566a13b1d2dabca46a12729fd1c418 Merge: f9330c32 f4790463 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 16 15:03:24 2019 -0600 Update CODEOWNERS to GSD t…

Update submodule pointer for FV3 (CCPP/Thompson initialization update)

arunchawla-NOAA · 2023-01-20T19:37:43Z

what is the status of this? It looks like we have both capabilities. Can we close this issue? If we have to remove manage externals at some point we can create a new issue then

KateFriedman-NOAA · 2023-01-25T19:55:43Z

We're using sorc/checkout.sh still but maintaining Externals.cfg for now. Possibly will remove Externals.cfg in the near future after we make a final decision. Will open an issue to remove it if so, as you suggest.

Closing this issue since manage_externals is supported now.

KateFriedman-NOAA added the feature New feature or request label Dec 17, 2019

KateFriedman-NOAA self-assigned this Dec 17, 2019

KateFriedman-NOAA added a commit that referenced this issue Jan 27, 2020

Issue #3 - initial add of manage_externals and needed Externals.cfg. …

bfc7bb0

…Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds.

KateFriedman-NOAA added a commit that referenced this issue Jan 28, 2020

Issue #3 - remove copy of manage_externals under util and add README.…

cf00863

…md file

KateFriedman-NOAA added a commit that referenced this issue Feb 6, 2020

Issue #3 - reduce hashes down to minimum 8 characters

d9ea1ac

KateFriedman-NOAA added a commit that referenced this issue Feb 13, 2020

Issue #3 - sync merge with develop branch

e46b175

KateFriedman-NOAA added a commit that referenced this issue Feb 14, 2020

Issue #3 - Updated README with new manic tag v1.1.7

f662fff

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020

Issue #3 - Merge branch 'develop' into feature/manage_externals

40084e6

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020

Issue #3 - update EMC_verif-global tag in Externals.cfg after sync wi…

830c73f

…th develop

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020

Issue #3 - updated link_fv3gfs.sh to adjust wafs links

e602cd3

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020

Issue #3 - updated README with new manic version

8699b46

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020

Issue #3 - remove prod_util and grib_util sections from build_all.sh,…

e83b90d

… removed elsewhere already

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020

Issue #3 - added explicit config flag example for checkout_externals …

622167d

…in README and blurb about this replacing checkout.sh

KateFriedman-NOAA added a commit that referenced this issue Mar 11, 2020

Merge pull request #29 from NOAA-EMC/feature/manage_externals

057b2a8

Issue #3 - Introduce manage_externals as replacement for checkout.sh

ajhenrique pushed a commit to RobertoPadilla-NOAA/global-workflow that referenced this issue Mar 30, 2020

Merge pull request NOAA-EMC#3 from RobertoPadilla-NOAA/feature/gefs_w…

f74a39b

…ave_statgem Updating wave_stat step

KateFriedman-NOAA pushed a commit that referenced this issue Sep 3, 2020

Merge pull request #3 from KateFriedman-NOAA/feature/gfsv16b-wave

485632e

Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py

KateFriedman-NOAA added the wontfix This will not be worked on label Feb 23, 2021

KateFriedman-NOAA assigned WalterKolczynski-NOAA Aug 11, 2021

lgannoaa pushed a commit to lgannoaa/global-workflow that referenced this issue Feb 9, 2022

update modules for jet (NOAA-EMC#3)

b2c1050

aerorahul self-assigned this Mar 8, 2022

KateFriedman-NOAA removed their assignment Mar 16, 2022

zhanglikate pushed a commit to zhanglikate/global-workflow that referenced this issue Oct 6, 2022

Merge pull request NOAA-EMC#3 from climbfuji/thompson_init_update

0d79a64

Update submodule pointer for FV3 (CCPP/Thompson initialization update)

KateFriedman-NOAA closed this as completed Jan 25, 2023

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Convert checkout.sh to manage_externals #3

Convert checkout.sh to manage_externals #3

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Convert checkout.sh to manage_externals #3

Convert checkout.sh to manage_externals #3

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